mRNA_H-akashiwo_Contig1011.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1011.13.1
Unique NamemRNA_H-akashiwo_Contig1011.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1011.13.1 vs. uniprot
Match: A0A7S4DAY2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAY2_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 8.130e-22
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 LAPGQPANHCFAANFDDRAPDHHPAPGIAGVLQTYYAAVARVVM 134
            LAPGQPANHCFAANFDDRAPDHHPAPGIAGVLQTYYAAVARVVM
Sbjct:  153 LAPGQPANHCFAANFDDRAPDHHPAPGIAGVLQTYYAAVARVVM 196
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BLAST of mRNA_H-akashiwo_Contig1011.13.1 vs. uniprot
Match: A0A7S3UQ72_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQ72_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 3.420e-7
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 3 
Query:    3 LAPGQPANHCFAANFDDRAPDHHPAPGIAGVLQTYY 110
            LA G+PA HCFA N  + APD H APG+AG+++TYY
Sbjct:   45 LAAGRPAAHCFAVNGREAAPDAHSAPGVAGIVETYY 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1011.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4DAY2_HETAK8.130e-22100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3UQ72_HETAK3.420e-761.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1011contigH-akashiwo_Contig1011:297845..300403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size223
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.4931083-CDS-H-akashiwo_Contig1011:297844..2979181681387050.4931083-CDS-H-akashiwo_Contig1011:297844..297918Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 297845..297918 +
1681387050.504718-CDS-H-akashiwo_Contig1011:298504..2985981681387050.504718-CDS-H-akashiwo_Contig1011:298504..298598Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 298505..298598 +
1681387050.512853-CDS-H-akashiwo_Contig1011:300349..3004031681387050.512853-CDS-H-akashiwo_Contig1011:300349..300403Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 300350..300403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1011.13.1prot_H-akashiwo_Contig1011.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1011 297845..300403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1011.13.1

>prot_H-akashiwo_Contig1011.13.1 ID=prot_H-akashiwo_Contig1011.13.1|Name=mRNA_H-akashiwo_Contig1011.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=74bp
SWPPGSPRTTASRPTSTTARRTTTRLPALRACSRPTMLQWPVWSWRPYPF
QQIISQAAALARSTASQVRNRRT*
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mRNA from alignment at H-akashiwo_Contig1011:297845..300403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1011.13.1 ID=mRNA_H-akashiwo_Contig1011.13.1|Name=mRNA_H-akashiwo_Contig1011.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2559bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:297845..300403+ (Heterosigma akashiwo CCMP452)
AGCTGGCCCCCGGGCAGCCCGCGAACCACTGCTTCGCGGCCAACTTCGAC
GACCGCGCGCCGGACCACCACCCGGTGCCAGAGCCCCCCCTCCTCCTTTC
CTGCCCCCTGCCTGGGGACGCCGCCGTGCGTGAGAATGGGAAGCGGGTAA
GGTGGGCGGCGGCGGCGATCGTGGCGGTGGGAGAGGGCGGGCGTGGTGGG
CGAGCgGGGGGCGCGGGGGCTGGGATGTCGCCGAGAAGCGCTCTCGTCGG
TTCCTCCATCACCACCAGAAGGCTCACGCAGTCGTTCCCCAACTGAAGCG
GGTGGGGAAGCGAGGGAGGTCTAAGATGGCAGAGCCCGGAAGGAGGAGAA
GAACGGCCTGGGGGCAGAAGTGCGTGAGGTGGTGCCCGCGGATTGCAGGG
TCTTCATCAACAGCAGCAGATGGCTGTCTCTCCTACGCTGCGGAAACCTG
TATTATGCAACGAAGAGCCTGAGGTGGACATTTTTGATGGGATGTATAAT
ATATGAGGTGATCATATTATGTGGTGAAGAAGCTAAGTATAACAGGAAAA
ATATGCAATGCACTTAACGCCATCAATTGTTGTCAATGTCCTTTTTCTGT
TTATACCTTGATGGCTTCTGTTCTCGTGCTATGTACTCCTTCTGCTCCGC
CTGCCACCAGGCTCCCGGCATTGCGGGCGTGCTCCAGACCTACTATGCTG
CAGTGGCCCGTGTGGTCATGGCGGCCCTACCCTTTTCAGCAGATCATTAG
CCAGGTTCACCCCCCCACACACACACCGTCGTATATAGACATACACGTCT
TAATATAAAAGTTGATGATGATAGAAGAGCTGAATTTAGCGACCCACGCA
ACCACCTATCTTCTGTCAGAAGTCAAATATATAAGCGCCAGTATAGAATA
ATTGACCATTGATGAGTGGAAGCAATGGTTACCCAAAACTCATCCACTGC
TGCTAGCACCACCCTTCTCTACTTTGTTACCCTGTCTTTTAAGTATCGTC
TTATAGGATTAAATGACATAATTGCCCTATCGTATGTATGCGGTATAGAT
TGAACCTGTAAACTGGTACACGAGAGCCAGAAATATAGAGAATAAATCTG
GTGGAACCCTTGCAAGGTTAAAACCTTGGTGTTTTACGTTTGGATTACTT
TGATTTGCTGGCTAGTTTGGCTCTCACTGTCATTTGTCAGTCTTTTTTTT
ACAATGCAGCGTTCTCGTTGGCTACCGGCGCTTGTTGGCTATTTGGCGGA
TTCCTCATCATTTTTGATTTGCTGTTCCTGGACAAATCAAGTTCTGTGCT
GCTTTTTTCGCTGGCCGTTTGGTTGGAACTTCTGTTTGTTTTTTGCATGA
TTGCCATATTATGGCAACGGTTGTGTTTTTAGCAGCAGGAGGAGGAGAAG
AGCTTCTATTTCGGGTTGTTGTGAAAAGAGTGCTGATGATGCTGTGATGG
AGTGGTAGTAGTAGTTTTTAGCTGCTGGTAGTAGTTGGCTTCTACATATC
ATTGCCATTTATTTTGGACACTAGTTGTACTGACGATGGCTTTTATAGCC
GAAACCGGTCTGCAACAGTCCTTTTAAAATATTGGAATCAGACATTATAG
TTTCATGATGTTGTATTTCACGCGCTATAGCAGTATTTATGGCCTCGGCC
TTTAAGCTTTGATGGTGTCCGTGGAGCATTAGACTGGGTCAACGTCTTCC
TTCTGCAACTTCCTATGCCCTGATGGTGGTCCTATTAATCAAATGTATAA
TACAGATAGGGAAAAAAGTATAAATTCGATTGCAGCTTCCTCTTACTTCT
TGCTTTGCCCAATACATGCCTAAACAAAATCTAATATCATCATCATCATC
ATCACCAAACCCTCATCCTGTGTGTGAAAATATCCAGGTATACCCACCCC
ATTCTACTCATCATTATTGTCCATGCGTGTACAATTGGCTTCTGAGAGGA
AAACATCCTTCCAGTACATGTGTTGCTGTTGGAGAGTGGGATGCCTCAGA
TCGTTCCTATTGCCTGAAATCCTAGCTCTCTGTAGCATCTTCTGAAGTTT
GCCATGGAACAAGTATACACGATTGTGAAGGGTTGGTTTAAACTTGAGTG
CTCACAATATTATATAATAATATGTATGACACCATCTACTACAAAGTTTG
ACTTTGGAGCACCATTTGTTAAAATGAGTTTTGGTATTTTTGAGCTGGGA
AGAGACTGTAGATTCACTAACACCTCAATTTTGAAGAGGAAAACATCTGG
TTGAGTAAAACCACTTTGTGAGAGGGCTGAGAAGCCCATTTGTGAAGAGT
TGGAAAATCACCGAATGCATCCTCTATCTGAAGGCATTGAGCGCATGGGG
GTTTACAGCAAAAGCCGCATCCATCATCAAAGAGCGTAGCCCCGTTTTGC
CAAAATAATATATGTGGCGTGTTTTTCGAACCATTACtaTATAGTAGTTT
GACGTGTATTCATAGAACCGACTACATGCATTTTAGCGGTGCCCCCCCCG
GCCAGGCCGCAGCGCTGGCGCGGTCCACAGCCTCGCAGGTGAGGAACAGG
AGGACGTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1011:297845..300403+

>mRNA_H-akashiwo_Contig1011.13.1 ID=mRNA_H-akashiwo_Contig1011.13.1|Name=mRNA_H-akashiwo_Contig1011.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=222bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:297845..300403+ (Heterosigma akashiwo CCMP452)
AGCTGGCCCCCGGGCAGCCCGCGAACCACTGCTTCGCGGCCAACTTCGAC
GACCGCGCGCCGGACCACCACCCGGCTCCCGGCATTGCGGGCGTGCTCCA
GACCTACTATGCTGCAGTGGCCCGTGTGGTCATGGCGGCCCTACCCTTTT
CAGCAGATCATTAGCCAGGCCGCAGCGCTGGCGCGGTCCACAGCCTCGCA
GGTGAGGAACAGGAGGACGTAG
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