mRNA_H-akashiwo_Contig101.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig101.10.1
Unique NamemRNA_H-akashiwo_Contig101.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A7S3Y8R9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R9_HETAK)

HSP 1 Score: 115 bits (288), Expect = 1.610e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1
Query:    1 CPLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            CPLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR
Sbjct:  771 CPLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 828          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A7S3Y8Q7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Q7_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 2.580e-21
Identity = 42/58 (72.41%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 CPLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            CPLI+TV+G+AH S QAFLRR++A+LSAKW++PLS+VTNWVRVR+Q +LI+AVDLR R
Sbjct:  401 CPLIVTVEGIAHQSMQAFLRRIAARLSAKWQKPLSTVTNWVRVRVQFALIKAVDLRTR 458          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A0A9X813_LYGHE (Putative methyltransferase Exig_2346 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X813_LYGHE)

HSP 1 Score: 67.8 bits (164), Expect = 4.540e-13
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 PLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            PLII+ DGV H  F    RR++A L+ KW +P S V +W+RV++Q+++IRAV LR+R
Sbjct:   65 PLIISCDGVMHREFAVLSRRLAATLTEKWSKPFSQVVSWIRVKLQLAVIRAVSLRIR 121          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A0K8SWD2_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SWD2_LYGHE)

HSP 1 Score: 68.9 bits (167), Expect = 2.180e-12
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    4 PLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            PLII+ DGV H  F  F +R++A L+ KW +P S V +WVRV++Q+++IRAV LR+R
Sbjct:  207 PLIISCDGVMHREFGVFSKRIAAVLNEKWSKPFSQVVSWVRVKLQMAVIRAVSLRIR 263          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A0K8SIS0_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SIS0_LYGHE)

HSP 1 Score: 68.2 bits (165), Expect = 5.180e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    4 PLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            PL+ + DGV H  ++ FL+R++  LS KW + LS VT+WVRV+ Q+S+IRAV LRLR
Sbjct:  240 PLVCSCDGVLHIEYETFLKRMANTLSEKWNKSLSWVTSWVRVKTQMSVIRAVSLRLR 296          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A6H5FVY7_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FVY7_9HEMI)

HSP 1 Score: 68.2 bits (165), Expect = 7.100e-12
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    4 PLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            PLI++ +GV H  ++ FL++++  LS KW +PLS  T WVRV+ Q+S+IRA+ +R+R
Sbjct:  853 PLIVSAEGVMHREYETFLKQMAITLSEKWSKPLSQTTQWVRVKTQLSVIRAISMRIR 909          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A0K8S445_LYGHE (Uncharacterized protein (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8S445_LYGHE)

HSP 1 Score: 65.5 bits (158), Expect = 3.660e-11
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    4 PLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLRA 177
            PL+ + DG  H  F  FLRR++  L AKW +P S V  W+ +++QI LIR+++LRLR+
Sbjct:  194 PLVTSCDGALHREFSMFLRRMAHTLEAKWSKPYSQVLGWIHIKIQIGLIRSINLRLRS 251          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A6H5HCT1_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HCT1_9HEMI)

HSP 1 Score: 65.9 bits (159), Expect = 4.630e-11
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    4 PLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            PL+ + DGV H  F   L+R + +L+ KW+RP + V  WVRVR++I++I+AV LRLR
Sbjct:  962 PLVCSCDGVLHREFHTLLKRTADRLAEKWKRPYTQVLGWVRVRIEIAIIKAVSLRLR 1018          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A0K8SU65_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SU65_LYGHE)

HSP 1 Score: 64.3 bits (155), Expect = 5.580e-11
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    4 PLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            PLI + DG  H  +  F +R+++ L+ KW RP S V  WV+VR Q+S+IRAV LRLR
Sbjct:  138 PLICSCDGALHREYTVFQKRLASTLAEKWSRPYSLVLGWVKVRTQVSIIRAVSLRLR 194          
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Match: A0A6A4JU40_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JU40_APOLU)

HSP 1 Score: 63.9 bits (154), Expect = 7.610e-11
Identity = 27/57 (47.37%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    4 PLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLIRAVDLRLR 174
            PLI++ DG  H  FQAFL++ + +LS KW R LS ++ +++V++QI+++RAV +RLR
Sbjct:  136 PLIVSCDGALHKEFQAFLKKAANRLSEKWGRDLSEISGFLKVKVQITVLRAVSMRLR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig101.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7S3Y8R9_HETAK1.610e-28100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8Q7_HETAK2.580e-2172.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0A9X813_LYGHE4.540e-1350.88Putative methyltransferase Exig_2346 (Fragment) n=... [more]
A0A0K8SWD2_LYGHE2.180e-1252.63Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A0K8SIS0_LYGHE5.180e-1254.39Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A6H5FVY7_9HEMI7.100e-1247.37Reverse transcriptase domain-containing protein n=... [more]
A0A0K8S445_LYGHE3.660e-1146.55Uncharacterized protein (Fragment) n=2 Tax=Lygus h... [more]
A0A6H5HCT1_9HEMI4.630e-1149.12Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A0K8SU65_LYGHE5.580e-1150.88Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A6A4JU40_APOLU7.610e-1147.37Uncharacterized protein n=1 Tax=Apolygus lucorum T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig101contigH-akashiwo_Contig101:409816..410001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15708082
PFAMsRVT_1
Model size186
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.38e-09
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.6423173-CDS-H-akashiwo_Contig101:409815..4100011681387049.6423173-CDS-H-akashiwo_Contig101:409815..410001Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 409816..410001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig101.10.1prot_H-akashiwo_Contig101.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig101 409816..410001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig101.10.1

>prot_H-akashiwo_Contig101.10.1 ID=prot_H-akashiwo_Contig101.10.1|Name=mRNA_H-akashiwo_Contig101.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=62bp
CPLIITVDGVAHASFQAFLRRVSAQLSAKWRRPLSSVTNWVRVRMQISLI
RAVDLRLRAPG*
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mRNA from alignment at H-akashiwo_Contig101:409816..410001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig101.10.1 ID=mRNA_H-akashiwo_Contig101.10.1|Name=mRNA_H-akashiwo_Contig101.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=186bp|location=Sequence derived from alignment at H-akashiwo_Contig101:409816..410001+ (Heterosigma akashiwo CCMP452)
TGCCCCCTCATCATCACTGTTGATGGAGTTGCCCATGCTTCCTTCCAGGC TTTCTTGAGGCGTGTGTCTGCGCAGCTCTCAGCCAAGTGGCGCCGGCCTT TGTCTTCTGTGACTAACTGGGTGCGGGTGCGGATGCAGATATCCCTGATT AGGGCTGTGGACCTGCGTCTCCGGGCTCCAGGCTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig101:409816..410001+

>mRNA_H-akashiwo_Contig101.10.1 ID=mRNA_H-akashiwo_Contig101.10.1|Name=mRNA_H-akashiwo_Contig101.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=186bp|location=Sequence derived from alignment at H-akashiwo_Contig101:409816..410001+ (Heterosigma akashiwo CCMP452)
TGCCCCCTCATCATCACTGTTGATGGAGTTGCCCATGCTTCCTTCCAGGC
TTTCTTGAGGCGTGTGTCTGCGCAGCTCTCAGCCAAGTGGCGCCGGCCTT
TGTCTTCTGTGACTAACTGGGTGCGGGTGCGGATGCAGATATCCCTGATT
AGGGCTGTGGACCTGCGTCTCCGGGCTCCAGGCTGA
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