mRNA_H-akashiwo_Contig1008.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1008.2.1
Unique NamemRNA_H-akashiwo_Contig1008.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1008.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1008contigH-akashiwo_Contig1008:123444..123693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size195
Hectar predicted targeting categorysignal anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.5659177-UTR-H-akashiwo_Contig1008:123443..1234931681387048.5659177-UTR-H-akashiwo_Contig1008:123443..123493Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1008 123444..123493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.5792255-CDS-H-akashiwo_Contig1008:123493..1235911681387048.5792255-CDS-H-akashiwo_Contig1008:123493..123591Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1008 123494..123591 +
1681387048.5873961-CDS-H-akashiwo_Contig1008:123647..1236931681387048.5873961-CDS-H-akashiwo_Contig1008:123647..123693Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1008 123648..123693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1008.2.1prot_H-akashiwo_Contig1008.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1008 123494..123693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1008.2.1

>prot_H-akashiwo_Contig1008.2.1 ID=prot_H-akashiwo_Contig1008.2.1|Name=mRNA_H-akashiwo_Contig1008.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=48bp
MLRAIIHSLDTLLLVVVVVVIHRRPEARTRDLLLVTWMIYYAVLLLLL
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mRNA from alignment at H-akashiwo_Contig1008:123444..123693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1008.2.1 ID=mRNA_H-akashiwo_Contig1008.2.1|Name=mRNA_H-akashiwo_Contig1008.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=250bp|location=Sequence derived from alignment at H-akashiwo_Contig1008:123444..123693+ (Heterosigma akashiwo CCMP452)
CTCACCTTTGGCTCCCACGGTCAGGGGGAGTATTGATAATGCATGCCTGA
ATGCTGAGGGCAATCATCCATTCACTTGACACCTTACTCCTAGTAGTGGT
GGTGGTGGTGATACACCGGAGGCCAGAGGCCCGGACCAGGGATCTACTGC
CGGAGGTGTTACCACGGAAGCACTGCGGGTACCGATTCCGAGTTATTCTC
CCAGTCTAGTGACATGGATGATATATTATGCTGTTCTACTTCTTCTTCTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1008:123444..123693+

>mRNA_H-akashiwo_Contig1008.2.1 ID=mRNA_H-akashiwo_Contig1008.2.1|Name=mRNA_H-akashiwo_Contig1008.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=144bp|location=Sequence derived from alignment at H-akashiwo_Contig1008:123444..123693+ (Heterosigma akashiwo CCMP452)
ATGCTGAGGGCAATCATCCATTCACTTGACACCTTACTCCTAGTAGTGGT
GGTGGTGGTGATACACCGGAGGCCAGAGGCCCGGACCAGGGATCTACTTC
TAGTGACATGGATGATATATTATGCTGTTCTACTTCTTCTTCTC
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