mRNA_H-akashiwo_Contig1007.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1007.8.1
Unique NamemRNA_H-akashiwo_Contig1007.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1007.8.1 vs. uniprot
Match: A0A6V1S4W8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S4W8_HETAK)

HSP 1 Score: 103 bits (256), Expect = 9.260e-22
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:  265 FLTYDNEVDTKKT----LALTCSILNFDIAEVWVAEEGGGVRCLYVYATPN-ATQL---VLSDANSD--HQLSPRLCEMAEGTQ-EVQWFTSASANSPLHSDLPINTAIVKKHTGRDAARHVDMFLVCLALRRMDFDPPMIAFFR 666
            F  + +EV T+ T    LAL C +L FDIAE+WV +E G +RC  VY+ P  A Q    ++ +A S   H LSP LCE A+G++ E  WFTS    + LH  LP+ TA+V +   +   +++  ++VC +++RM FDPP++AF R
Sbjct:   32 FSAWCDEVATRDTVRQCLALICEVLTFDIAEMWV-KEAGIIRCCQVYSQPPIAAQYEDHLIQEAKSSQTHMLSPALCERADGSKSEPLWFTSTREGAWLHPKLPVQTAVVMQEQVQ-TCKYMSFYVVCFSMKRMQFDPPILAFLR 174
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BLAST of mRNA_H-akashiwo_Contig1007.8.1 vs. uniprot
Match: A0A835Z8J1_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.250e-10
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:  298 KTLALTCSILNFDIAEVW--VAEEGGGVR---------CLYVYATPNATQLVLS---------DANSDHQLSPRLCEMAEGTQEVQWFTSASANSPLHSDLPINTAIV 561
            + LA     LNFDIAE+W  V +  G  +         CLYVYA P   +   +         +    H+LSP LCE A  ++   WFTS   ++PLH+DLP+NTA+V
Sbjct:   36 RCLAAAAYTLNFDIAELWTFVPDPAGNHKAGEPAVTPSCLYVYAQPATLENYRARLVGIWNNGEREKRHKLSPGLCERARESECPLWFTSKDHDTPLHADLPLNTAVV 143
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BLAST of mRNA_H-akashiwo_Contig1007.8.1 vs. uniprot
Match: A0A6H5JZF2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZF2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.740e-10
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:  292 TKKTLALTCSILNFDIAEVWV------AEEGGGVR--CLYVYATPNATQL------VLSDANSD--HQLSPRLCEMAEGTQEVQWFTSASANSPLHSDLPINTAI 558
            T   LA  CS+L F IAEVW       A EG  +   CL+VYA P   +        L D N+   H LSP L + A   + + WFTS   ++PLH+ LP+NTA+
Sbjct:   85 TDGCLAAVCSLLQFQIAEVWTYTGDISAAEGKPLEPMCLHVYARPATIESFKDVHGALRDDNTSARHSLSPGLVDEARKQERLLWFTSMHPDTPLHTSLPLNTAV 189
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BLAST of mRNA_H-akashiwo_Contig1007.8.1 vs. uniprot
Match: A0A835Z8G5_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.820e-10
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:  298 KTLALTCSILNFDIAEVW--VAEEGGGVR----------CLYVYATPNATQLVLS---------DANSDHQLSPRLCEMAEGTQEVQWFTSASANSPLHSDLPINTAIV 561
            + LA     LNFDIAE+W  V +  G V+          CL+VYA P   +   +         +    H+LSP LCE A   +   WFTS   ++PLH+DLP+NTA+V
Sbjct:   39 RCLAAAAYSLNFDIAELWTFVPDPAGKVKSGEPPPVKPACLHVYAQPATLENYRAKLVGIWNNGEREKRHKLSPGLCERAREHECPLWFTSTDHDTPLHADLPLNTAVV 147
[Close]
BLAST of mRNA_H-akashiwo_Contig1007.8.1 vs. uniprot
Match: A0A836C8Q0_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.560e-6
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1 
Query:  298 KTLALTCSILNFDIAEVWV----AEEGGGVR--CLYVYATPNATQLVLS---------DANSDHQLSPRLCEMAEGTQEVQWFTSASANSPLHSDLPINTAI 558
            + L   C+ L FD+ EVW      + G  +   CL  YA P   +   S           +  H LSP L + A   +   WFTS+  ++P+H DLP+NTA+
Sbjct:   16 RCLDAACASLGFDLGEVWSFCGEVQRGKALEPVCLRAYARPATIETYGSRVKLGLDHESVSQRHSLSPILVKQARQNEAPLWFTSSHPDTPMHEDLPLNTAV 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1007.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6V1S4W8_HETAK9.260e-2241.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z8J1_9STRA2.250e-1037.96Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]
A0A6H5JZF2_9PHAE5.740e-1040.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835Z8G5_9STRA7.820e-1037.61Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]
A0A836C8Q0_9STRA2.560e-632.35Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1007contigH-akashiwo_Contig1007:206068..206733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size667
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.48515-UTR-H-akashiwo_Contig1007:206067..2062291681387048.48515-UTR-H-akashiwo_Contig1007:206067..206229Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1007 206068..206229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.5000973-CDS-H-akashiwo_Contig1007:206229..2067331681387048.5000973-CDS-H-akashiwo_Contig1007:206229..206733Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1007 206230..206733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1007.8.1prot_H-akashiwo_Contig1007.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1007 206230..206733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1007.8.1

>prot_H-akashiwo_Contig1007.8.1 ID=prot_H-akashiwo_Contig1007.8.1|Name=mRNA_H-akashiwo_Contig1007.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=168bp
MDAKEGLDILSQHFVQQYEAEVPSKQVADEDTSRFLTYDNEVDTKKTLAL
TCSILNFDIAEVWVAEEGGGVRCLYVYATPNATQLVLSDANSDHQLSPRL
CEMAEGTQEVQWFTSASANSPLHSDLPINTAIVKKHTGRDAARHVDMFLV
CLALRRMDFDPPMIAFFR
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mRNA from alignment at H-akashiwo_Contig1007:206068..206733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1007.8.1 ID=mRNA_H-akashiwo_Contig1007.8.1|Name=mRNA_H-akashiwo_Contig1007.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=666bp|location=Sequence derived from alignment at H-akashiwo_Contig1007:206068..206733+ (Heterosigma akashiwo CCMP452)
TTGGATGATGCAGTGCAGTATGATAGAACGAGAGGAGCAGTGTTGTAAAT
CGTGGAAGTGTAAAGCCGCCCCGAACTTCAAGCGTTATATATTCAATTTG
TAGGGTCGTTCTGGACAGAAAAAGGGGAGGTCTTCAGAGAGAGAGGGGAA
GTCATTCGGAATATGGATGCAAAGGAAGGCCTGGATATTCTCAGCCAGCA
TTTCGTCCAACAATACGAGGCCGAAGTCCCTTCGAAGCAGGTAGCGGACG
AAGATACATCGCGGTTTCTGACCTATGATAATGAGGTTGACACGAAGAAG
ACTCTCGCTTTGACCTGCAGTATTCTTAATTTTGACATTGCAGAGGTTTG
GGTGGCAGAAGAGGGTGGGGGGGTCAGGTGCCTGTACGTTTATGCGACCC
CGAACGCCACCCAGCTCGTACTCTCTGACGCGAACTCCGACCACCAGCTG
TCCCCGCGGCTCTGCGAAATGGCGGAGGGCACCCAGGAGGTCCAGTGGTT
CACCTCGGCCTCTGCGAACTCCCCCCTGCACTCGGACCTGCCCATCAACA
CTGCCATCGTGAAGAAGCACACAGGCCGCGACGCCGCCCGGCACGTGGAC
ATGTTCCTGGTCTGCCTGGCGCTCCGCCGGATGGACTTCGACCCGCCCAT
GATCGCCTTCTTCCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1007:206068..206733+

>mRNA_H-akashiwo_Contig1007.8.1 ID=mRNA_H-akashiwo_Contig1007.8.1|Name=mRNA_H-akashiwo_Contig1007.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=504bp|location=Sequence derived from alignment at H-akashiwo_Contig1007:206068..206733+ (Heterosigma akashiwo CCMP452)
ATGGATGCAAAGGAAGGCCTGGATATTCTCAGCCAGCATTTCGTCCAACA
ATACGAGGCCGAAGTCCCTTCGAAGCAGGTAGCGGACGAAGATACATCGC
GGTTTCTGACCTATGATAATGAGGTTGACACGAAGAAGACTCTCGCTTTG
ACCTGCAGTATTCTTAATTTTGACATTGCAGAGGTTTGGGTGGCAGAAGA
GGGTGGGGGGGTCAGGTGCCTGTACGTTTATGCGACCCCGAACGCCACCC
AGCTCGTACTCTCTGACGCGAACTCCGACCACCAGCTGTCCCCGCGGCTC
TGCGAAATGGCGGAGGGCACCCAGGAGGTCCAGTGGTTCACCTCGGCCTC
TGCGAACTCCCCCCTGCACTCGGACCTGCCCATCAACACTGCCATCGTGA
AGAAGCACACAGGCCGCGACGCCGCCCGGCACGTGGACATGTTCCTGGTC
TGCCTGGCGCTCCGCCGGATGGACTTCGACCCGCCCATGATCGCCTTCTT
CCGG
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