mRNA_H-akashiwo_Contig1005.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1005.5.1
Unique NamemRNA_H-akashiwo_Contig1005.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1005.5.1 vs. uniprot
Match: A0A7S3Y659_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y659_HETAK)

HSP 1 Score: 173 bits (439), Expect = 6.760e-52
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 3 
Query:    3 AFDGAEAHPLGGRLGTTGRDTHAQARHLAQLANRLCEGRMVTILESAASKVGATKAEREKFCKAVLAHLQGSLGQPFTKQLTANDK 260
            AFDGAEAHPLGGRLGTTGRDTHAQARHLAQLANRLCEGRMVTILESAASKVGATKAEREKFCKAVLAHLQGSLGQPFTKQLTANDK
Sbjct:  176 AFDGAEAHPLGGRLGTTGRDTHAQARHLAQLANRLCEGRMVTILESAASKVGATKAEREKFCKAVLAHLQGSLGQPFTKQLTANDK 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1005.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y659_HETAK6.760e-52100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1005contigH-akashiwo_Contig1005:333386..334072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size384
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.0080695-UTR-H-akashiwo_Contig1005:333385..3335231681387048.0080695-UTR-H-akashiwo_Contig1005:333385..333523Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1005 333386..333523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.0182977-CDS-H-akashiwo_Contig1005:333523..3336771681387048.0182977-CDS-H-akashiwo_Contig1005:333523..333677Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1005 333524..333677 -
1681387048.0253346-CDS-H-akashiwo_Contig1005:333980..3340721681387048.0253346-CDS-H-akashiwo_Contig1005:333980..334072Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1005 333981..334072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1005.5.1prot_H-akashiwo_Contig1005.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1005 333524..334072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1005.5.1

>prot_H-akashiwo_Contig1005.5.1 ID=prot_H-akashiwo_Contig1005.5.1|Name=mRNA_H-akashiwo_Contig1005.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=82bp
ARSTGRRRTRWAAGWAPPAATRTPRPATSPSLQIDSAKGEWLQSWKVRHQ
KWGQQRQSARNSARPCWHIFKDPWGSLSQNN*
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mRNA from alignment at H-akashiwo_Contig1005:333386..334072-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1005.5.1 ID=mRNA_H-akashiwo_Contig1005.5.1|Name=mRNA_H-akashiwo_Contig1005.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=687bp|location=Sequence derived from alignment at H-akashiwo_Contig1005:333386..334072- (Heterosigma akashiwo CCMP452)
GCGCGTTCGACGGGGCGGAGGCGCACCCGCTGGGCGGCCGGCTGGGCACC
ACCGGCCGCGACACGCACGCCCAGGCCCGCCACCTCGCCCAGGTGCAGGC
CGCGGCGTGGGCGTGCGCCGCCGCCGCCGAGGGCGGCGGCGGCGGCGGCG
GTAAAGAAACCCTGATTAATCATATCCCATGGCCCCATCATGATCGGCTA
TACGACTCAGAGTATAGTAGTGTGTAGTCCTCCTTCCTCAATTCACTGAG
AGGCAGACTTGTAGCTTTGCTCCCTGTCAAAATGGATTGCTCGAAATTTC
ATGTATAGCGACTCTGTTGGTTATGATTGCCTCATGAATTTCAAAAAAAA
AAATGTGGGGATTTGTTTCTTGTGTGCCATACATGGGGGGTGCAGCTTGC
AAATAGACTCTGCGAAGGGCGAATGGTTACAATCCTGGAAAGTGCGGCAT
CAAAAGTGGGGGCAACAAAGGCAGAGCGCGAGAAATTCTGCAAGGCCGTG
CTGGCACATCTTCAAGGATCCCTGGGGCAGCCTTTCACAAAACAACTAAC
AGCCAATGATAAATAATGCTAGTATCAGAGGGAGGGGGGGGGCTGGTATG
CTGCACACCTTAGAGTAAGAGCATTGGAAGTCCTTGGGATCTACGTAATG
CAATGCAATAATATAGCAATATAGCTATTTTCGCACC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1005:333386..334072-

>mRNA_H-akashiwo_Contig1005.5.1 ID=mRNA_H-akashiwo_Contig1005.5.1|Name=mRNA_H-akashiwo_Contig1005.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=246bp|location=Sequence derived from alignment at H-akashiwo_Contig1005:333386..334072- (Heterosigma akashiwo CCMP452)
GCGCGTTCGACGGGGCGGAGGCGCACCCGCTGGGCGGCCGGCTGGGCACC
ACCGGCCGCGACACGCACGCCCAGGCCCGCCACCTCGCCCAGCTTGCAAA
TAGACTCTGCGAAGGGCGAATGGTTACAATCCTGGAAAGTGCGGCATCAA
AAGTGGGGGCAACAAAGGCAGAGCGCGAGAAATTCTGCAAGGCCGTGCTG
GCACATCTTCAAGGATCCCTGGGGCAGCCTTTCACAAAACAACTAA
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