mRNA_H-akashiwo_Contig1004.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1004.4.1
Unique NamemRNA_H-akashiwo_Contig1004.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1004.4.1 vs. uniprot
Match: A0A7S4D517_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D517_HETAK)

HSP 1 Score: 110 bits (275), Expect = 1.240e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MHEREKSLSGNTSEVIENIPDSSSVNSSQSEDKSVGKKEXXXXXXEQSAQDLKGLLAPQTSSKARRRAN 207
            MHEREKSLSGNTSEVIENIPDSSSVNSSQSEDKSVGKKEXXXXXXEQSAQDLKGLLAPQTSSKARRRAN
Sbjct:   13 MHEREKSLSGNTSEVIENIPDSSSVNSSQSEDKSVGKKEXXXXXXEQSAQDLKGLLAPQTSSKARRRAN 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1004.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D517_HETAK1.240e-29100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1004contigH-akashiwo_Contig1004:256323..264489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size230
Hectar predicted targeting categoryother localisation
Exons3
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.7759712-CDS-H-akashiwo_Contig1004:256322..2564251681387047.7759712-CDS-H-akashiwo_Contig1004:256322..256425Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 256323..256425 +
1681387047.785665-CDS-H-akashiwo_Contig1004:256642..2567281681387047.785665-CDS-H-akashiwo_Contig1004:256642..256728Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 256643..256728 +
1681387047.7945538-CDS-H-akashiwo_Contig1004:264450..2644891681387047.7945538-CDS-H-akashiwo_Contig1004:264450..264489Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 264451..264489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1004.4.1prot_H-akashiwo_Contig1004.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1004 256323..264489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1004.4.1

>prot_H-akashiwo_Contig1004.4.1 ID=prot_H-akashiwo_Contig1004.4.1|Name=mRNA_H-akashiwo_Contig1004.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=76bp
MHEREKSLSGNTSEVIENIPDSSSVNSSQSEDKSVGKKEKKKSKKEQSAQ
DLKGLLAPQTSSKARRRANTTDTDLE
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mRNA from alignment at H-akashiwo_Contig1004:256323..264489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1004.4.1 ID=mRNA_H-akashiwo_Contig1004.4.1|Name=mRNA_H-akashiwo_Contig1004.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=8167bp|location=Sequence derived from alignment at H-akashiwo_Contig1004:256323..264489+ (Heterosigma akashiwo CCMP452)
ATGCACGAAAGGGAAAAGTCCCTCTCTGGCAACACCTCTGAAGTCATCGA
AAACATCCCAGACTCGTCCAGTGTGAACTCCAGCCAGTCGGAGGACAAAT
CAGGTATTTAATGCACTTTACCATGCAGCATGGCTGCAAATACCTGTGTT
TCATTCTAcccccccccCCCCCTCAAAATAAAAAAAACTTAACTGCAAGT
AGATCCTGAAAATGTTATAGGGTGTGCACACATGCTTATAATTAACAAAC
ACACATACACTGGTATCAGTACCAAATCAGTGCTTGTTGCCCTTTTTTTT
GGTACATGACCGCACTGCAGTTGGCAAGAAGGAAAAGAAGAAATCAAAGA
AAGAGCAATCTGCTCAGGATCTGAAAGGGCTGCTTGCCCCACAAACGTCA
TCAAAGGTTAGAGTACAAACAGTTGTCTCCCACTATATACACACATACAT
ACATGATGTGTGTGGTGGAATGCACGATGTGTATTTTTTTTTTTTTTGGT
ATACGTTCTACTTGCAATGCGCCCCTTCACATCCTGAGCCACACAAcCCC
CGTCTATTCGCAAGTCGCCTTGACATCTGATGCACTTCTTTGGATCAAGT
CTGATTACTGGCCAACTTTgGAAGTTCCAGCTATCCTTAACCCTACATGC
TCTATTGTCCTGTGGCCTCATCGCCCTCTTTCAGTTGTCTCTACCGTAGA
CGCTTTTCCGACAACTCACATCCATCGACGAGTGCATCTTCTCCTTCCCG
CGGGTCGAGGGTGTATCATCTAGACAGATGTAATGGTGGAATACCATGTG
TCGAATGGGCAGGAATCGATGGTAGCTTGTCTCGGTCATCGCAAATAAAA
AATCTGATGATAAGTTGTCCGAGGTAAGTTTTTGAGGGGATTCGAAAAAA
TTATCCATTGCCAGCGGAgAAAAAAACTTTCgGTGATCaAAAACTTATCT
ACTATAGCCTTTATCATTCCAAGCCTACTGTCCTTTTTGACGTCTTTTTG
GCCCTTTATTTTCAAATGGCTATTAGAAAGTGAAACAGGTTATCCCCCAA
GCAACCTACTTAATCCAAAGTAAACAAAACCATAGCAGCCATTCCACGCT
ATCGCGGCTCCGTGAGCGTGAAAGATAACGAAATTCAATAATTCAGTTGT
TTTCATGACAAACTCTCAAACAGGGGACTTTTGCATTTGCTGAAAGAATT
GAATTCTTTTACGGTTAGCTCAAAGGCTCCGTGAGATAATTAAATTCGTG
ACGCTTTATCATTGGTTCATTGTGTGTAATTGCATTTTCGGGTTTGAATT
TAGGAAGGCCGAGATGAATTAAGTTACACCAATCAAAAGCGTGAATCTTA
CCAAGCCAATGAGACTCGAGAGCTCTCTCGGAGAAAGAAAATCCTCAATC
GCTTACACTGAATCTAAATCCATGATTGACAAATCAACTATTCAAAATTA
TATTTTTCGCCTATGATCGAACAATGGTATATGTGTCACACCAATCATCA
ATCGTGATTCAACCTACTTTTTTTTTGTTTGCTTCGCTTTTTGATTGGAT
GGGGGCATGTAAGTTGAACTATTTGTGCATACTTTCTGAATTTTGCTTCT
TGGTTGGTTTGAGATATGTGGAGGTGAACATGTGGAGGGTGAAACCCAAA
CAAGAAAAAGTTTTCTTTAGACATTAAAGGTACATAGTCATCGATTGGGA
ATAAATGAATGATGATGGAAAACACAAACTGGTCTAGGCAAAACCACAAC
TGCTGCTGCTTAATGCTCCTGCACGATGGAAAACTCCAATCCTCTCGTGC
GTATGAAAAGAAGAACATGAAAACACAAAGATGAATCCGATTGGACAAAC
ACACAAACATCGAACTCAGCTACAGCATGCTAATCCAACATATATGAAAA
ATCAAAAACGAGAAATAAAATGAAAAATAAAAACCAGAAGACGAAGACAA
AATAGAAAATAGAGTGAAGACAAAGACAACAACACATTTCCCCCGCACTC
CCCAGATGTCAGACCAGGGTAAGAAGCCAGAAGAAACCATGTGCCAGACA
CAACAAACAGCTTGCTAGTGCAATGAACCCCATCTAACAGGACAGGCCAG
CACCCAGGCAAAAACTGCTGCAATGTCAGAAGGCCACGCGAGCTTCGAAC
AGCAATCGCGGGCACAACCCACATGTCCACAGTGAAAAGCGATCGGAGTA
ATAACAGTAGCCAGTGATGGCAGCATCCACAACAGGGAGCAGCTGCCAAG
TCAGAGTGCCGGAAGTAGCCAGGGTAGGAAGCCAGAAGAACATATGCGCC
AGACACGACAACGCTTGCGAGTGCAAGCCGCCTCAATGTCAGAAGGCCAA
GAAGAACTTATGTGCCAGAGCAATCAGAGTAATACAGTGCCAGAAGCGCC
TGGCGCAGGAGGAAAACCTCACAGAGGGTCGGCACCGCCAGTGCCAGAGC
GATCAGAGCAATACAGTGCCAGAAGCGCCTGCGCAGGATAAAACCTCACA
GAGGGGCAAGCGACCGCCAGTGCCAGAGAGATCAGAGCAATACAGTGCCA
GAAGCGCCTGCGCAGGATAAAACCTCACAGAGGGTCGGCGACCGCCAGTG
CCAGAGAGATCAGAGCAATACAGTGCCAGAAGCGCGTCTGCGCAGGATAA
ACCTCACAGAGGGTCAAGCACCGCCAGTTGTTCCAGAGAAATCAGAGCAA
TACAGTGCCAGAAGCGCGTCTGCGCAGGATAAAACCTCACAGAGGGTCGA
AGCACCGCCAGTTGTTCCAGAGAGATCAGAGCAATACAGTGTCAGAAGCG
TCTGCGCAGGATAAAACCTCACAGAGGGTCAAGCACCGCCAGTTGTTCCA
GAGAGATCAGAGCAATACAGTGCCAGAAGCGTCTGCGAGGATAAAACCTC
ACAGAGGGTCGGGAAGACCGCCAGTGCCAGAGAGATCAGAGCAATACAGT
GCCAGAAGCGTCTGCGCAGGATAAAACCTCACAGAGGGTCAAGCACCGCC
AGTTGTTCCAGAGAGATCAGAGCAATACAGTGCCAGAAGCGTCTCGCGAG
GATAAAACCTCACAGAGGGTCGGGCACCGCCAGTGCCAGAGAGATCAGAG
CAATACAGTGCCAGAAGCGTCTGCGCAGGATAAAACCTCACAGAGGGTCG
AAGCACCGTCAGTTGTTCCAGAGACATCAGAGCAATACAGTGCCAGAAGC
GTCTGCGCAGGATAAAACCTCACAGAGGGGGTCAAGCACCGCCAGTGCCA
GAGAGATCAGAGCAATACAGTGCCAGAAGCGTCTGCGCAGGATAAAACCT
CACAGAGGGTCGAAGCACCGCCAGGTGTTCAGGGGAAGGACTCAGATAAA
GCATGCCATCGTCTTCGTCACTAAGCATCGCTAGTGTCTTCGTCCAAATC
ACAGATACGGGTTTTGAAGGCATCACCACGATAAACGGAGCGTCACGGAA
GAGCGGTGTGCTGATTACGTGTGGAGGTGAACATGTGGAGGGTGAAACCC
AAACAAGAAAAAGTTTTCTTTAGACATCAAAGGTACATATAGTCATCGAT
TGGGAATAAATGAATGATGATGGAAAACACAAACTGGTCTAGGCAAAACC
ACGACTGCTGCTGCTTCATGCTCCTGCACGATGGAAAACTCCAATCCTCT
TCTCGTGCGTATGAAAAGAAGAACATGAAAACACAAAGATGAATCCGATT
GGACAAACACACAAACATCGAACTTGCAGCTACAGCATGCCAACCCAACA
TATATGAAAATCAAAAACGAGAAATAAAATGAAAAATAAAAACCAGAAGA
CGAAGACAACAACAAGATATGCATGATCATTGGTGTACTTTGACGAATGA
CATTTTTTTTACTCTTGCGAACTAAAATTATCTCACAATTCGTTTACGGA
CGGAGGATCAGATAGCGTGGAATGGGGGTAAGGAACATGCCAAAAAATGC
CCAGGTTCATAAAAGGACGCCTCTCTGATCATATTACTTGGACACCACCA
AACCCTTTGATCAAAAGTCCAAACAGACTTAAAACCCATATCACACTATC
CAATTTAGTTGTCTTTATGGCGTATAGCTGCTTGCAAGTTTTCAATCCCA
TCCTCTTGCTCACAGGTGGACTCTGCGCCCCCCACCCCAACCACCAGTTT
TTATCCATCTGAGTTTATCTAAAGCTTGAATAAAAAATTGAACACACCCT
CCCCCAAAAATGCGTTTTTAATGGTTTGATAGTATCTGAAGGGAATGGGA
CAAAAATTGGAGAAAACGATGAAGATGAGGATGAGATACATGATCTCAAA
GTGTCCTGCTACCTAAGCAAATTTTCATGGACGTCAGAGACGTCCATAGC
CCCCCAAACAGACCCTAAAAATACGTTGAAGTGATGGCAATCACCAAGTA
CGCTCGCACAGTTCACACCGGCAGCGACCCGCAGCGACAGCCTGGACACC
CCGCGGCAGCCCATGGCAGCACGCCGCACCCgGCAGTCATGAAGCCGTGT
TCCTCTACTACTGACTATTGTTTGTTGTGTTTTGAAGATGCAGAAGTGGA
AACAAAGAGGTGGAGCTTcTGACACACGCACGCACCGCGCAAAGTTCAAT
ATATAGGCTAGCAGCAGCAGCAGCAGCAGGAAGTAGAAGAAGAAGACCAA
GCCGCCGCCACAACAGCAGCATTTTGTACTACTACTAATCCCACTAATCC
AATGGAATAATCAACAAATCAACGGTTTGGGCTTGCTTCATCGCTTCCCC
TGTGGCTTTCGAAGCGTACGGGTTTGGGACAGAGCTGTGGTTCTTCTGTT
CGTCCCTTGGCAGAGCTGTGGTTCTTCTGTTCGCCGCCCGGAGCAGAGCT
GTGGTTCTTCTGTTCGCTTGTGTGACGGTCGCAGAGCTGTGGGTCTTCTG
TTCGCGACAAACTAGATCACTACGTTAGATGTTCAACgGGAATGACGAAG
AGGTACTTTTTTCGACTGTAGATGACGTGATGGTTGGCTTGGAAAACTGT
GGATGAACTGTTTTTTCGGTGTTATTGAGAGCTTTGACCAATCGTGCCTC
AGCTGGATCTTCTTGTGTGGCCGATGACATTTTCGTTCTATGAATACTTG
GGGACTAGTTCTGCTTACAACCGCCAATGATATTCTTGGCTTTTGGGAAC
ATAGAAAATGTAAGCCGAGTTTGCCTCCAAATCGTGGAAGATTTTGGTTT
TTGCTTGTTCTGCTTCTACCTTGATTCAGCTTGGTACAGCACACCATGTA
ACCTTTTTTCAATTCAAGGGTGCCTTGAGCCACTGCATTTCTGCTGGTTC
AGTATGCTCATCCCTATTCTTCTGGGATCAACAGTAATTTTTGAAATGGA
GGGGCTTATGATGATGTTTCTTTCTGACATAGAGGGGCTTTCTGAACTGG
AGGGTGACTCAACTCTCTGGCTTGTGAAGCACAGTTCACTTGATAGGCTG
GATCAGCCTAGGAGGGGACTTCGCTCACTTGTGCTGCACTcCCTTGATGA
TTGTGGAGGGGCGTTGAAGTGATGGCAATCACCAAGTACGCTCGCACAGT
TCACACCGGCAGCGACCCGCAGCGACAGCCTAGACACCCCGCGGCAGCCC
ATGGCAGCACGCCGCACCCgGCAGTCATGAAGCCGTGTTCCTCTACTACT
GACTATTGTTTGTTGTGTTTTGAAGATGCAGAAGTGGAAACAAAGAGGTG
GAGCTTCTGACACACGCACGCACCGCGCAAAGTTCAATATATAGGCTAGC
AGCAGCAGCAGCAGCAGGAAGTAGAAGAAGAAGACCAAGCCGCCGCCACA
ACAGCAGCATTTTGTACTACTACTAATCCCACTAATCCAATGGAATAATC
AACATATCAACGAAATATATTAAAGTTTCATACCCAAAACAGCTGGAATG
ATGAACCTGGCCTGCCTGTCACTACACAAGGTGCATGGGCTGCTTGCTCT
GTTGATATTAACCATCATCCAGACCATAAACTATTAGCTCTTGGTGCAGT
AATTTCAAGCAAAAAATCTGATACAAATCCCATATTTGCCAGTCGCAAAG
ACCTCTTTAAGTCTCATTCACCATTGAAACAAAAGCCAAGCAGGGATCAT
TTGAGAGTCATCTTCACATATCCCACCCATAAACAAACACTGGTATACTC
GGCACTCGTTTTCCGTTGATTCAAAAAATTAGAAATAATAAGAAACCCCG
CACTTTAGTGAGACACTGCGGTCCCAAGGAACCGATCCCCCGGGCCCAAG
GGCCATCGGGCACCTGAAAACCTTTAACCCtgCGGAAGTGGTGCAGTACT
ATTCTCTTAAAATGAAGGAAGATCTGAATTTCATGCCAAAAATCTTGTCG
GCCCAAAACGAGGAAAAACATAAAAAACCTCGTCACCCTTATAGGGTTGA
GCGtTTTTGGGAATTTCAGGGATACAAGAGGTTTTTATTGGCCTCTACAG
TAGTTGGTCGAGTTCATAGGAGGTCAAATGGCTGTCGTCCCTCGTGGGAT
ACAGCAATATAGCGCTACTACGAGTTTTTTGGTGGTTGTGGGTCTCGAAC
GTCCTCAAGCCGTACATTTTCGCCCTCGGAAATGTGCGGCTTGAGTGACG
CTTCGAGACCCACAACCACTCAATTGGGCTCTAGTGCGTTATATAGCTAA
TTTGCGTTCACATAATTCAGTAGTGGAAGGTTATCCCAATGCATTCGAGT
TTTTCCATTACGCATTGCTCTGTAAAATGGCCTCCTGTTGTGCGGGGGTT
CCACAAATAGCGACCTCAGCCGCTTCAATGCTTCAGTACCCTTTGGTTTG
TGCCTTGGGTCATTCAGAAATGGCCGAATCTCCACTCCACAAGCTTTCTT
TGCTGAGATCTCCCCCCCCCCCAGGGATCACTTAAGCGGTATACCATACC
ACCATGATGATGATGATGTTAATTTTAGTTTCAAGTCTAGCTTTTCAAAT
CACTTTCGGGGCAGAACCCCTAGCTTCTATAAGCAGACCCTTCCACTTCT
ATCTGCTAAGAAATAAGAACAGTACCTTCAGTACCCCCCAGCTGTGCCTT
CATCAATGTACCCCCCCCTGGTGTGAAACCCCACCCATGCCCCTACATAC
TATACCCTATGGCTTCTCAATCCCCAGCTGGACCAACCGATCCTGCCAAT
GACATCTCACCTGAAACTGCATGTGTGTTGGTGTGTGTGTGTGTGTGTGT
GTGTGTTTTTGTATACGTTCTACTAGCAATGCGTTCCTTCACATCCTGAA
CCACACAACCACCGTCTTTGCAGGCTGCCTTGACATCTGAGCACTTCGTC
GAGCTAAGTCTGACTACTGACTAAACCGAAGTTTTCAGCTGTCCTTAACC
CTAGACATTCTCTATTGCCCTTTTTGGCCTCATCGCCCTCTTTCAGTTGT
CTCTACCGTAGGCACTTCTTCCGACAACTCACATCCATCGACGAGTGCAT
CTTCTCCTTCCCGCAAGCCATCTCAACATGCATGGCAGTGAAGAAAGCCT
TCCGTCTTCCAAGTTGCAGCCCCCCTCCCTCGCTCTCCCGCCCGGCAGCA
GATGTGACGCCCCAATTGGAAAGGGTGCGGCGAAGGCGCACCACCCCCAC
TGCAGGCCAAACACAGTTTTATAGTAGTGGTGACTTGATGATGGATATAG
CATATAGCTTGTGGGAAGTATGGCATCGTAAAGCACCTTACAGGGCTAGT
CAAAGACTGCGGTATACCACCATGTGTCTAACATGGAAGAATGCTCATAT
AACTGTTGGGAAAAAGTATTTATATGCAACTTCTGCAACCCTATATTGGG
AATGGAACCCCTGGTCTCCATTCTTGCCGGTTGACTGTATACAAGCAAGC
AAAGATGATGAAGTGATAAGTATCGCTGAATTTGTCAAACAGCTCGTGCA
TGGGCGTGCGTCTACAGGCCCGTTTAGAACAAACCTCCCTCAGTAAGATC
GATGTCGCAAGGCTTCTGTTCTCTTTAGAGGGTAATCTTGAATCACAACA
CACTAAACCCGATGATGATTGATTACAGTAGTTGTAGTACGCTGTGGTAT
AGCGCCCCCTCCCAAAGCGTGGCGCCCGCTCTGGCCGCCTCCTCGCCCCA
TGCGCCCCTTCCCCATCTCGTGTGGCAGGCACGGCGCCGCGCGAACACCA
CCGACACCGACCTTGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1004:256323..264489+

>mRNA_H-akashiwo_Contig1004.4.1 ID=mRNA_H-akashiwo_Contig1004.4.1|Name=mRNA_H-akashiwo_Contig1004.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig1004:256323..264489+ (Heterosigma akashiwo CCMP452)
ATGCACGAAAGGGAAAAGTCCCTCTCTGGCAACACCTCTGAAGTCATCGA
AAACATCCCAGACTCGTCCAGTGTGAACTCCAGCCAGTCGGAGGACAAAT
CAGTTGGCAAGAAGGAAAAGAAGAAATCAAAGAAAGAGCAATCTGCTCAG
GATCTGAAAGGGCTGCTTGCCCCACAAACGTCATCAAAGGCACGGCGCCG
CGCGAACACCACCGACACCGACCTTGAG
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