mRNA_H-akashiwo_Contig1004.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1004.3.1
Unique NamemRNA_H-akashiwo_Contig1004.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1004.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1004contigH-akashiwo_Contig1004:252489..253472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size425
Hectar predicted targeting categoryother localisation
Exons5
Cds size396
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1004.3.1prot_H-akashiwo_Contig1004.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1004 252516..253472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.7086844-UTR-H-akashiwo_Contig1004:252488..2525151681387047.7086844-UTR-H-akashiwo_Contig1004:252488..252515Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1004 252489..252515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.7170107-CDS-H-akashiwo_Contig1004:252515..2525981681387047.7170107-CDS-H-akashiwo_Contig1004:252515..252598Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 252516..252598 +
1681387047.724403-CDS-H-akashiwo_Contig1004:252729..2528621681387047.724403-CDS-H-akashiwo_Contig1004:252729..252862Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 252730..252862 +
1681387047.7322412-CDS-H-akashiwo_Contig1004:253014..2530791681387047.7322412-CDS-H-akashiwo_Contig1004:253014..253079Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 253015..253079 +
1681387047.7407203-CDS-H-akashiwo_Contig1004:253184..2532641681387047.7407203-CDS-H-akashiwo_Contig1004:253184..253264Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 253185..253264 +
1681387047.7490788-CDS-H-akashiwo_Contig1004:253437..2534721681387047.7490788-CDS-H-akashiwo_Contig1004:253437..253472Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 253438..253472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1004.3.1

>prot_H-akashiwo_Contig1004.3.1 ID=prot_H-akashiwo_Contig1004.3.1|Name=mRNA_H-akashiwo_Contig1004.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=132bp
MENENLDDAENVDSFFLPGGILDTDTERPAQTGGGADLDLLDLDLGGLDL
GLAAGVGSRHTRASTSRFVSSETPRTGQQHASQSSFEGEENDHLWMLEGI
NPNAPEFTPSLPNQGNENLPDFFQDRNDESDP
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mRNA from alignment at H-akashiwo_Contig1004:252489..253472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1004.3.1 ID=mRNA_H-akashiwo_Contig1004.3.1|Name=mRNA_H-akashiwo_Contig1004.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=984bp|location=Sequence derived from alignment at H-akashiwo_Contig1004:252489..253472+ (Heterosigma akashiwo CCMP452)
CGGGCGACTTAACAGGCCAGCTCTATCATGGAGAACGAAAACCTTGATGA
TGCAGAGAATGTGGATTCATTCTTCCTTCCTGGGGGGATTTTGGATACTG
ATACTGAAAGGTGTACGCAATTCTAATGATGACACCTCGCTAACCTTCTC
GTTTTTCCCATTTTCATGCGCTGATGTCTCTCACTAGCTGCATGGGGTGT
CCCGATTGGGTTCCCTGCGCTTTTACCGTGCGGTGCAACAGGCCTGCGCA
GACTGGAGGCGGAGCCGATTTAGACCTCCTTGACTTGGATCTTGGGGGTC
TTGACCTTGGGTTGGCTGCAGGCGTGGGCTCTCGTCATACAAGGGCCAGT
ACCAGTCGTTTTGTCAGCAGTGAAGTGAGGCTCACACTTCAACGAAACAC
TGTTCTTTGCAAAAATATACATGAAAATAGTCCAAGTTACGTGCAAACCT
TAGGTGGATACCCACAAGTCGAACAAGCAGTTTGTATTTTGCTTATAGTC
ATGTTTATCAATCAACAATACTACAGACACCAAGGACTGGTCAACAGCAC
GCATCTCAGTCATCCTTCGAGGGCGAAGAAAATGACCACTTGTAAGTGAA
CTGAACCATCAAGTACAACACAGAGCGAAGACGCACAACTTCTCGTGAAA
CTTCACTGGCATGCAACTTCACATGATAAATGTAAACCGCTTCCAGGTGG
ATGCTGGAGGGTATCAATCCAAATGCCCCGGAATTCACCCCGTCGTTGCC
AAACCAGGGCAACGAAAACCTCCCAGGTAGGAGGTGTATACTGCTACTTC
CGCGAAGCTGTGTGTGATGATCATGATGGGAAAACAGGAAAATTCCTATT
CAGCCGTTCTGGCCTAATCATCGGCATTCGAGCTTTCTTGCAAGTTGTTG
TTTGTTGATTGGTTGTTCTCACTCGCTCTTGAATTCTTATTGTCTTCAGA
CTTCTTCCAAGATCGCAACGATGAGAGCGACCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1004:252489..253472+

>mRNA_H-akashiwo_Contig1004.3.1 ID=mRNA_H-akashiwo_Contig1004.3.1|Name=mRNA_H-akashiwo_Contig1004.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig1004:252489..253472+ (Heterosigma akashiwo CCMP452)
ATGGAGAACGAAAACCTTGATGATGCAGAGAATGTGGATTCATTCTTCCT
TCCTGGGGGGATTTTGGATACTGATACTGAAAGGCCTGCGCAGACTGGAG
GCGGAGCCGATTTAGACCTCCTTGACTTGGATCTTGGGGGTCTTGACCTT
GGGTTGGCTGCAGGCGTGGGCTCTCGTCATACAAGGGCCAGTACCAGTCG
TTTTGTCAGCAGTGAAACACCAAGGACTGGTCAACAGCACGCATCTCAGT
CATCCTTCGAGGGCGAAGAAAATGACCACTTGTGGATGCTGGAGGGTATC
AATCCAAATGCCCCGGAATTCACCCCGTCGTTGCCAAACCAGGGCAACGA
AAACCTCCCAGACTTCTTCCAAGATCGCAACGATGAGAGCGACCCC
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