mRNA_H-akashiwo_Contig1003.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1003.3.1
Unique NamemRNA_H-akashiwo_Contig1003.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: UPI0010FBB0A7 (uncharacterized protein LOC114944459 n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FBB0A7)

HSP 1 Score: 107 bits (268), Expect = 1.570e-27
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 AGWLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRA 297
            + W R+ DDT++IW H +E F +FL+ LN  +  I++    E+N QLPFLDVLV +N+DG+    VYRKPTH+DRYL+ TS+H    K S I +L+YRA
Sbjct:   30 STWFRYVDDTFVIWNHGKETFPQFLDFLNYQHRSIQFIMEIEQNNQLPFLDVLVKKNDDGTLGHRVYRKPTHTDRYLHSTSHHHPAQKNSVISSLIYRA 128          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: UPI0005F52B34 (uncharacterized protein LOC105562568 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F52B34)

HSP 1 Score: 108 bits (269), Expect = 3.280e-27
Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 AGWLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRA 297
            + W R+ DDT++IW H +E   +FL  +N  +P I++    E+N Q+PFLDVLV RNEDG+    VYRKPTH+DRYL+  S+H    K S I +LV+RA
Sbjct:   30 STWFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTIEIEQNSQIPFLDVLVCRNEDGTLGHNVYRKPTHTDRYLHANSHHHPAQKNSVINSLVHRA 128          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: A0A6J1QJD7_9HYME (uncharacterized protein LOC112461499 n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1QJD7_9HYME)

HSP 1 Score: 110 bits (274), Expect = 7.390e-27
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 AGWLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRA 297
            + W R+ DDT++IW H ++   +FL  LN  +P I++    E+N Q+PFLDVLV RN+DG+ +  VYRKPTH+DRYL+ TS+H    K S I +LVYRA
Sbjct:   30 STWFRYVDDTFVIWSHGRDTLPQFLAFLNSQHPNIQFTMEVEQNSQIPFLDVLVRRNDDGTLSHQVYRKPTHTDRYLHATSHHHPSQKNSVISSLVYRA 128          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: UPI0007383550 (uncharacterized protein LOC107037456 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007383550)

HSP 1 Score: 104 bits (260), Expect = 1.330e-26
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 AGWLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRA 297
            A W R+ DDT++IW H +   ++FLE LN  +P IK+    E+NG LPFLDV V  NEDG+ +  VYRKPTH+DRYLN  S      K S I +L+YRA
Sbjct:   17 AVWFRYVDDTFVIWSHGRTGLNQFLEFLNAQHPSIKFTMKIEQNGCLPFLDVSVRCNEDGTLSHQVYRKPTHTDRYLNAASRQHPSQKNSVISSLMYRA 115          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: A0A1B6E0Y0_9HEMI (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E0Y0_9HEMI)

HSP 1 Score: 106 bits (265), Expect = 2.480e-26
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    7 WLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRANH 303
            WLR+ DD W +W H      +FLE LN I+  IK+    E   QLPFLD+L  R  DGS    VYRKPTH+DRYLN +S+H    K   + TL+ RA H
Sbjct:   32 WLRYVDDVWAVWPHGDSTLQQFLEHLNSIHRNIKFTMEIESKKQLPFLDILTTRKADGSIGHAVYRKPTHTDRYLNSSSHHHPAQKYGILNTLINRAIH 130          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: UPI0005F425C1 (uncharacterized protein LOC105566767 n=2 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F425C1)

HSP 1 Score: 107 bits (266), Expect = 6.400e-26
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 AGWLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRA 297
            + W R+ DDT++IW H +E   +FL  +N  +P I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYL+  S+H    K S I +LV+RA
Sbjct:   30 STWFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSIISSLVHRA 128          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: A0A401QI04_SCYTO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI04_SCYTO)

HSP 1 Score: 109 bits (273), Expect = 6.900e-26
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    7 WLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRA 297
            W R+ DDT++IW H ++  +EFL  LN I+P IK+    E+NGQ+PFLDVLV RN +G+ + TVYRK TH+DRYL+  S+H  K K   + TL +R+
Sbjct:  308 WYRYIDDTFVIWPHGRQKLEEFLGHLNSIHPNIKFTMEIEENGQIPFLDVLVKRNAEGTLSHTVYRKTTHTDRYLHAESHHHPKQKRGILHTLAHRS 404          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: A0A8B8A3Z2_ACAPL (uncharacterized protein LOC110990868 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B8A3Z2_ACAPL)

HSP 1 Score: 102 bits (254), Expect = 7.960e-26
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    7 WLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLV 288
            WLR+ DDT++IW+H Q+    FLE LNG++  I++    E+NG + FLDV V R EDGS   TVY KPTH+DRYL+ TS +  K K S  R LV
Sbjct:   21 WLRYVDDTFVIWQHGQDNLQLFLEHLNGLHSSIQFTMEQERNGNISFLDVEVTRKEDGSLARTVYHKPTHTDRYLHSTSFYHPKIKSSANRALV 114          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: UPI0005F3F8F4 (uncharacterized protein LOC105556235 n=3 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F3F8F4)

HSP 1 Score: 107 bits (268), Expect = 9.870e-26
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 AGWLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRA 297
            + W R+ DDT++IW H +E   +FL  +N  +P I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYL+  S+H    K S I +LV+RA
Sbjct:  106 STWFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTMESEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAPKYSVISSLVHRA 204          
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Match: UPI0014552671 (uncharacterized protein LOC117305532 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014552671)

HSP 1 Score: 103 bits (257), Expect = 1.450e-25
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    7 WLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRAN 300
            WLR+ DDT++IW H  E  D+FL  +N  +P I++    E +  LPFLDVL+ +  DGS   +VYRKPTH+DRYLN  S HP   K S  RTL+ RA+
Sbjct:   32 WLRYVDDTFIIWSHGLENLDDFLSHINRQHPNIQFTMETETSDSLPFLDVLISKKTDGSLAHSVYRKPTHTDRYLNARSFHPPSVKASVNRTLLQRAH 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1003.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010FBB0A71.570e-2750.51uncharacterized protein LOC114944459 n=1 Tax=Nylan... [more]
UPI0005F52B343.280e-2749.49uncharacterized protein LOC105562568 n=1 Tax=Volle... [more]
A0A6J1QJD7_9HYME7.390e-2750.51uncharacterized protein LOC112461499 n=1 Tax=Temno... [more]
UPI00073835501.330e-2651.52uncharacterized protein LOC107037456 n=1 Tax=Diach... [more]
A0A1B6E0Y0_9HEMI2.480e-2648.48Reverse transcriptase domain-containing protein (F... [more]
UPI0005F425C16.400e-2649.49uncharacterized protein LOC105566767 n=2 Tax=Volle... [more]
A0A401QI04_SCYTO6.900e-2650.52Reverse transcriptase domain-containing protein (F... [more]
A0A8B8A3Z2_ACAPL7.960e-2652.13uncharacterized protein LOC110990868 n=1 Tax=Acant... [more]
UPI0005F3F8F49.870e-2649.49uncharacterized protein LOC105556235 n=3 Tax=Volle... [more]
UPI00145526711.450e-2550.00uncharacterized protein LOC117305532 n=1 Tax=Aster... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1003contigH-akashiwo_Contig1003:144610..144915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size306
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-25
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.6752024-CDS-H-akashiwo_Contig1003:144609..1449151681387047.6752024-CDS-H-akashiwo_Contig1003:144609..144915Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1003 144610..144915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1003.3.1prot_H-akashiwo_Contig1003.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1003 144610..144915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1003.3.1

>prot_H-akashiwo_Contig1003.3.1 ID=prot_H-akashiwo_Contig1003.3.1|Name=mRNA_H-akashiwo_Contig1003.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=102bp
AGWLRFRDDTWMIWEHSQELFDEFLEKLNGINPKIKWEAVFEKNGQLPFL
DVLVVRNEDGSFTTTVYRKPTHSDRYLNWTSNHPVKDKLSGIRTLVYRAN
H*
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mRNA from alignment at H-akashiwo_Contig1003:144610..144915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1003.3.1 ID=mRNA_H-akashiwo_Contig1003.3.1|Name=mRNA_H-akashiwo_Contig1003.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig1003:144610..144915+ (Heterosigma akashiwo CCMP452)
GCTGGCTGGCTCAGGTTCCGTGATGACACCTGGATGATCTGGGAGCACTC TCAGGAACTTTTTGACGAGTTCTTGGAGAAGCTCAATGGCATTAACCCGA AGATCAAGTGGGAGGCGGTGTTTGAGAAAAATGGGCAGTTGCCTTTTCTG GACGTGTTGGTGGTGAGAAATGAGGATGGCTCTTTTACTACCACGGTCTA CCGGAAACCCACACACTCTGACAGGTATCTCAATTGGACTTCCAACCATC CTGTGAAGGACAAACTTTCTGGTATCAGAACTTTGGTCTATCGTGCTAAC CACTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1003:144610..144915+

>mRNA_H-akashiwo_Contig1003.3.1 ID=mRNA_H-akashiwo_Contig1003.3.1|Name=mRNA_H-akashiwo_Contig1003.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig1003:144610..144915+ (Heterosigma akashiwo CCMP452)
GCTGGCTGGCTCAGGTTCCGTGATGACACCTGGATGATCTGGGAGCACTC
TCAGGAACTTTTTGACGAGTTCTTGGAGAAGCTCAATGGCATTAACCCGA
AGATCAAGTGGGAGGCGGTGTTTGAGAAAAATGGGCAGTTGCCTTTTCTG
GACGTGTTGGTGGTGAGAAATGAGGATGGCTCTTTTACTACCACGGTCTA
CCGGAAACCCACACACTCTGACAGGTATCTCAATTGGACTTCCAACCATC
CTGTGAAGGACAAACTTTCTGGTATCAGAACTTTGGTCTATCGTGCTAAC
CACTAA
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