mRNA_H-akashiwo_Contig1000.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1000.5.1
Unique NamemRNA_H-akashiwo_Contig1000.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A7S2V5R3_9STRA (Dynein light chain (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5R3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.010e-46
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 1
Query:    1 MEGRGSGGGGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285
            ME RGSG G  K VCDMDEHG+MK DA N+AA AVEQ   E+DIS+HIK  FDQKYGPTWHCIVGTDFRAFVTHESK+FIFFY GK+AICLYKAG
Sbjct:   39 MESRGSGEG--KLVCDMDEHGEMKNDAKNVAAAAVEQHQEEKDISRHIKAHFDQKYGPTWHCIVGTDFRAFVTHESKHFIFFYIGKIAICLYKAG 131          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: F0XW00_AURAN (Dynein light chain (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW00_AURAN)

HSP 1 Score: 134 bits (338), Expect = 1.780e-39
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   52 DEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285
            DEHG+MKQ+  N+AA A+EQ++ E ++SKHIK  FDQKYGPTWHCIVG+DFRA+VTHESKNFIFFY GK AICLYK G
Sbjct:    1 DEHGEMKQEVYNLAAYAIEQYVTEMEVSKHIKAHFDQKYGPTWHCIVGSDFRAYVTHESKNFIFFYQGKTAICLYKCG 78          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A7S2CIH5_9STRA (Dynein light chain n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIH5_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.830e-39
Identity = 62/87 (71.26%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   25 GGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285
            G +K VCDMDEHG+MK DA  +A +A+E+F  E+ IS  IK  FD KYGPTWHCIVG+DFRAFVTHESK+FIFFY GK AICLYKAG
Sbjct:   30 GSSKIVCDMDEHGEMKADAHTVAGEAIEKFTEEKAISTSIKSFFDAKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKAG 116          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A7S0SUZ6_9STRA (Dynein light chain n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUZ6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.940e-36
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    7 GRGSGGGGNKFVCDMDEHG---DMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKA 282
            G GS G  +K VCDM++HG   +MK DA+++A+ A+E    E+DIS+HIK  FDQKYGPTWHCIVG+DFRAFVT+ESK+FIFFY GK AICLYK 
Sbjct:    7 GAGSSGPHSKMVCDMEDHGIHGEMKNDALSVASTALEANQEEKDISRHIKSFFDQKYGPTWHCIVGSDFRAFVTYESKHFIFFYIGKTAICLYKT 101          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A7S1YV50_9STRA (Dynein light chain n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YV50_9STRA)

HSP 1 Score: 127 bits (318), Expect = 6.690e-36
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   19 GGGGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285
            G G NK +CDMDEH +MK DAI++A  A+E  I E+D + HIKR FD KYGPTWH IVG+DF+A+ THE+K F FFY GK AIC+YKAG
Sbjct:   31 GTGMNKQICDMDEHSEMKSDAISVATNAIESHIQEKDQANHIKRAFDAKYGPTWHVIVGSDFKAYGTHEAKTFFFFYVGKAAICMYKAG 119          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: D7G4Z5_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4Z5_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.460e-35
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 1
Query:   34 KFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285
            K V DMD+HG+M+ DA N AA A+E    E++IS+ IK +F+ KYGPTWHCIVGTDF+AFVTHESK+F+FFY+GK+A CLYKAG
Sbjct:    9 KMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 92          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A8J2SHI5_9STRA ([Phosphatase 2A protein]-leucine-carboxy methyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHI5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.420e-34
Identity = 56/82 (68.29%), Postives = 69/82 (84.15%), Query Frame = 1
Query:   40 VCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285
             C +DEHG+MKQ+A N+AA AVEQF+ E +ISKHIK QFD+KYGPTWHCIVG+DF+   THE+K+FIFFY+GK A+ LYK G
Sbjct:  297 ACSVDEHGEMKQEAYNLAAYAVEQFVTEMEISKHIKAQFDEKYGPTWHCIVGSDFKLQCTHEAKHFIFFYHGKTAVALYKCG 378          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A835YST4_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.560e-33
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   22 GGGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285
            G  +  V DMD+H +M+ DA   AA A+E    E+ ISK IK + D KYGPTWHCIVGTDF+A+VTHE+K F+FFY+GK+AICLYKAG
Sbjct:    5 GASSSVVSDMDDHSEMRTDAQAWAAAAIESHAEEKAISKDIKGRMDDKYGPTWHCIVGTDFKAYVTHETKTFMFFYHGKMAICLYKAG 92          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A482SJR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJR4_9ARCH)

HSP 1 Score: 115 bits (288), Expect = 6.300e-32
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   67 MKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKA 282
            MK DA  + A A+E    E+DISKH+K  FDQKYGPTWHCIVG+DFRAFVTHESK+FIFFY GK AICLYKA
Sbjct:    1 MKHDAFTVVAAALETNTEEKDISKHVKTYFDQKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKA 72          
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A1X7VIS5_AMPQE (Dynein light chain n=3 Tax=Metazoa TaxID=33208 RepID=A0A1X7VIS5_AMPQE)

HSP 1 Score: 108 bits (269), Expect = 8.000e-29
Identity = 48/81 (59.26%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   43 CDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285
             DM E  DM+QDA+ IA QA+E+F +E+DI+ +IK++FD+KY PTWHCIVG +F ++VTHE+KNFI+FY G++AI L+K+G
Sbjct:   11 ADMSE--DMQQDAVEIATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKNFIYFYLGQVAILLFKSG 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V5R3_9STRA3.010e-4678.95Dynein light chain (Fragment) n=1 Tax=Fibrocapsa j... [more]
F0XW00_AURAN1.780e-3974.36Dynein light chain (Fragment) n=1 Tax=Aureococcus ... [more]
A0A7S2CIH5_9STRA7.830e-3971.26Dynein light chain n=1 Tax=Florenciella parvula Ta... [more]
A0A7S0SUZ6_9STRA1.940e-3665.26Dynein light chain n=1 Tax=Chromulina nebulosa Tax... [more]
A0A7S1YV50_9STRA6.690e-3664.04Dynein light chain n=1 Tax=Ditylum brightwellii Ta... [more]
D7G4Z5_ECTSI2.460e-3566.67Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A8J2SHI5_9STRA3.420e-3468.29[Phosphatase 2A protein]-leucine-carboxy methyltra... [more]
A0A835YST4_9STRA9.560e-3361.36Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482SJR4_9ARCH6.300e-3273.61Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1X7VIS5_AMPQE8.000e-2959.26Dynein light chain n=3 Tax=Metazoa TaxID=33208 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1000contigH-akashiwo_Contig1000:261675..261962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009032663.1
PFAMsDynein_light
Model size288
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.91e-40
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-19_003050.1
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size288
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.2847393-CDS-H-akashiwo_Contig1000:261674..2619621681387047.2847393-CDS-H-akashiwo_Contig1000:261674..261962Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1000 261675..261962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1000.5.1prot_H-akashiwo_Contig1000.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1000 261675..261962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1000.5.1

>prot_H-akashiwo_Contig1000.5.1 ID=prot_H-akashiwo_Contig1000.5.1|Name=mRNA_H-akashiwo_Contig1000.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=96bp
MEGRGSGGGGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKR
QFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG*
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mRNA from alignment at H-akashiwo_Contig1000:261675..261962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1000.5.1 ID=mRNA_H-akashiwo_Contig1000.5.1|Name=mRNA_H-akashiwo_Contig1000.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig1000:261675..261962+ (Heterosigma akashiwo CCMP452)
ATGGAAGGCCGAGGATCAGGAGGTGGTGGCAACAAGTTTGTCTGCGATAT GGATGAGCATGGTGATATGAAGCAAGATGCAATCAATATTGCTGCCCAGG CGGTGGAGCAATTCATTCTTGAGCGGGATATCTCAAAGCACATTAAGCGG CAGTTTGATCAGAAATACGGGCCAACATGGCATTGTATTGTGGGGACAGA TTTCAGGGCATTCGTGACACACGAGAGTAAGAATTTCATTTTCTTTTACA ACGGTAAATTGGCGATTTGTCTTTACAAAGCTGGTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1000:261675..261962+

>mRNA_H-akashiwo_Contig1000.5.1 ID=mRNA_H-akashiwo_Contig1000.5.1|Name=mRNA_H-akashiwo_Contig1000.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig1000:261675..261962+ (Heterosigma akashiwo CCMP452)
ATGGAAGGCCGAGGATCAGGAGGTGGTGGCAACAAGTTTGTCTGCGATAT
GGATGAGCATGGTGATATGAAGCAAGATGCAATCAATATTGCTGCCCAGG
CGGTGGAGCAATTCATTCTTGAGCGGGATATCTCAAAGCACATTAAGCGG
CAGTTTGATCAGAAATACGGGCCAACATGGCATTGTATTGTGGGGACAGA
TTTCAGGGCATTCGTGACACACGAGAGTAAGAATTTCATTTTCTTTTACA
ACGGTAAATTGGCGATTTGTCTTTACAAAGCTGGTTAA
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