mRNA_H-akashiwo_Contig100.40.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.40.1
Unique NamemRNA_H-akashiwo_Contig100.40.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig100.40.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK)

HSP 1 Score: 115 bits (289), Expect = 6.380e-29
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 VAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTRRKKFLD 180
            VAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTRRKKFLD
Sbjct:  459 VAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTRRKKFLD 518
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BLAST of mRNA_H-akashiwo_Contig100.40.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.520e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    7 KEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTRRKKFLD 180
            ++ LPP WVP+     L  G+G+LQ SLG+V + EA LGSASGARARKE+TR KKFLD
Sbjct:   86 RDFLPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFLD 143
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BLAST of mRNA_H-akashiwo_Contig100.40.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.270e-13
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 VAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 162
            V   +LPPMWVPLA G VL +GIG+LQ SLGDVM  EA LG+ SGARA K++ R
Sbjct:  106 VVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSAR 159
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BLAST of mRNA_H-akashiwo_Contig100.40.1 vs. uniprot
Match: A0A7S2SFC9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFC9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.930e-9
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    4 AKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTRR 165
            A  +LPP  +P+A  A +FVG+G+LQ SLGDV   EA LG +SGA ARKE  R+
Sbjct:   83 APPDLPPPAIPVAFAAAIFVGVGLLQGSLGDVYGQEADLGMSSGANARKEAERK 136
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BLAST of mRNA_H-akashiwo_Contig100.40.1 vs. uniprot
Match: K0T280_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T280_THAOC)

HSP 1 Score: 56.6 bits (135), Expect = 2.040e-8
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   10 EELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 162
            EELPP++VP+     +  G+GVL ASLG+VM+ EA LG  SGARA+KE  R
Sbjct:  102 EELPPVYVPIIFAIFVLGGVGVLTASLGNVMDEEASLGLQSGARAKKERDR 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3Y243_HETAK6.380e-29100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1Q394_9STRA1.520e-1462.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G8H6_ECTSI4.270e-1364.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SFC9_9STRA5.930e-955.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K0T280_THAOC2.040e-856.86Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1652843..1655193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size183
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003060.1
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.1953528-UTR-H-akashiwo_Contig100:1652842..16528661681387047.1953528-UTR-H-akashiwo_Contig100:1652842..1652866Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 1652843..1652866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.2045512-CDS-H-akashiwo_Contig100:1652866..16529231681387047.2045512-CDS-H-akashiwo_Contig100:1652866..1652923Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1652867..1652923 +
1681387047.2133603-CDS-H-akashiwo_Contig100:1655091..16551931681387047.2133603-CDS-H-akashiwo_Contig100:1655091..1655193Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1655092..1655193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.40.1prot_H-akashiwo_Contig100.40.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 1652867..1655193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.40.1

>prot_H-akashiwo_Contig100.40.1 ID=prot_H-akashiwo_Contig100.40.1|Name=mRNA_H-akashiwo_Contig100.40.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=53bp
MWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTRRKKF
LD*
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mRNA from alignment at H-akashiwo_Contig100:1652843..1655193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.40.1 ID=mRNA_H-akashiwo_Contig100.40.1|Name=mRNA_H-akashiwo_Contig100.40.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2351bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1652843..1655193+ (Heterosigma akashiwo CCMP452)
GTGGCAAAGGAGGAGTTGCCGCCCATGTGGGTCCCCCTGGCCACCGGCGC
GGTGCTCTTTGTGGGCATCGGCGTGCTCCAGGTACACCGTCGGTGCAGAA
GATCGAACCCCAACCTCTTCCTGCCACTGTCGCCGCCCACCCTCCCCCTC
TTTGCCCACACCCCTTCTCCCACCTCCTCCCTTCACTCACTCATCAAAAG
GAGGTCCTCGCGTGTTTATCTGAGACTATTCTTACAACATTTAGCTCACC
AACATCAGTACAGTTGATGGGTATGAGAGGTGGGAGTGGTGTGAGGAGGA
TGGGAGGTTTAAAAAAATGTTCTTTTGACAGGCCTCGGCATAAGGATTTC
GAGATGTACGTTCCGTACCTCGAACGTGCTCCGTACGGTTGCCAGATTTT
GGCTTTCGATGTACGGAATAAAAAAAAAGTATCATTTTTTGCAGTGCGGA
AAAAAAAAAATCCGATCTTCGATCGGCGATTAAATATAGGTGAGGAGGAG
GAGAAGGGTTGTTTTCGACTATATTATACCACCACCGCTGCTGCTGCTGC
TGAGGAGGAGAAGGAGGAGGGGAAGGAGCAGCAGCAGCAGCAGCAGGCAG
CTTCGTGTTAATTTTTTGATTGGCTTAGAAATAATCTTTACCTTTCTTGA
TATTCTTTGATTGGCTATAAGATAGTTTTCATATAAAAAATTGAGGATGA
GGAGGAAGAAGTAAAAAAATAATGATCATCATCCGTGCTCCGTACCCTCT
TTTTTTTCCGTACGCCCGGCAGTTCCGCCATTACCTGTACGGAAATACCC
CGAAATACCCCGTACGGAATGCTCCGTACCCCTCGTGTTTTGCTCTGAAA
ACGTACGAAACTTCGTACTTCCGTACTCTTATGCCGAGGCCTGTTTTGAA
GAATGTGGTTGTTAATTAAGGCGAATGAATGTATTATTTTTTGAATATAA
AAAAAGGAAGGGACAGGGCTTTCAACAATTTTGTTCAAATGGAGGAGCTT
CTTCCCTATTTTTGCTCAAATGGAGGAGCACCCACTCAAAATGGAGGAGC
AAAAAATAAAATAAAAAATTACAGTGCGGGAAAAAAAAACACACACACAC
ACACACGATCTTCAAGAAACAAAAAGGTGAGAAGGGAGACCCAGTGCAAG
CGGGGCCAGTCGCGACGAGCGCTTTGAGGATGGGGCCTCAAGGCTCTGCA
GCAAGAGGAATGCATCCGATTGTCAGCTAGACTACAATTCTACAATGTAT
ACATCTGATGAAGAGGAGGAGGAGGAGCATCGTCATCATCATCATCAGAA
GCAGCAGCAGCAGGAGCACGACCAGCATTGATGTATTTTTTTGATTGGCT
TAGAAAAAATCTTTACTTTTCCTGATATTCTTTGATTGGCTATATATAAA
TAAAAGATATTTTTTGATAGCCCAAGACAAAATATATAAGACCACGAATG
TCGATCATCTATTTTTTCTCGAAAATCGTGTGTGATTGCACGTTGTCGTT
GTTGACGAAATGGAGGCACGCGCCGCGCCTCCACGCCGCGCCTCCATTTC
CCCCAAAATATCGTCAAACACGCGGCGCGGTCCTTGAAACACGCGGCACG
TGCCGCGTGTCGCAGTCTTGTTGAAACCCCTGAAGGGAGAATATAATGAA
AATCTTAGAATTTGATTCTGGGTTAGTCTCTGATAAGATAATTATCACAC
CCTGTGTCAGTATAGTTTGTTATGCTGTTCTACAATTGACATACTTGTCA
TGATGAAGTGGGGGTGCTGTAGTGCAGCCTTTTTCGAATCAATAGAAATT
TCTCGTCTCCTGCTTCAGTGATGGTAGTGGAATGCTTGAACTAGGGTTGA
ATATATGTGCCTTTCGAAAAGACATATAATGTCAATCTTCAATAAACAAG
AAACTGCTACACTGATGATCTTTGAAGTATAGAGGCCAAACCACCCCCAC
CATTCCTGCCATTGGTGCCACACTTGTCGTGCTATCATTTTGTGGGCTTC
AAATCCTGCTGCAACACTTCAGTCTTTGCTCAAACCCCCAAGTCCCAGGT
AAGCAGGTAGGCGCGATGGGGGGGGGCTTGCTGGCCTCTCTCAGTTTCCT
ACACGGAGGAGCGGGAACGCCAGTCCGATCAGTAGCACTACTATACTGAG
CAGCACCAGGGTACTACCATCGCCACCAACAGCTCAAAACAAAAACAAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAACTCCCCTCGCTTCTGCCGCCAGG
CGTCGCTGGGGGACGTGATGGAGGCCGAGGCGGGGCTGGGCTCGGCCTCC
GGGGCCCGCGCCCGCAAGGAGAACACGCGCCGGAAGAAGTTCCTCGACTG
A
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:1652843..1655193+

>mRNA_H-akashiwo_Contig100.40.1 ID=mRNA_H-akashiwo_Contig100.40.1|Name=mRNA_H-akashiwo_Contig100.40.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=159bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1652843..1655193+ (Heterosigma akashiwo CCMP452)
ATGTGGGTCCCCCTGGCCACCGGCGCGGTGCTCTTTGTGGGCATCGGCGT
GCTCCAGGCGTCGCTGGGGGACGTGATGGAGGCCGAGGCGGGGCTGGGCT
CGGCCTCCGGGGCCCGCGCCCGCAAGGAGAACACGCGCCGGAAGAAGTTC
CTCGACTGA
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