mRNA_H-akashiwo_Contig100.22.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.22.1
Unique NamemRNA_H-akashiwo_Contig100.22.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig100.22.1 vs. uniprot
Match: A0A7S3UPQ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPQ6_HETAK)

HSP 1 Score: 488 bits (1256), Expect = 6.100e-174
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1 
Query:   82 METDLKPSISGLFVGSFNINAAQLTEEDARIWLQDALTHQPDVIALGFQECGTMPDVNYPNPRNFKREYSISWRRQPSPSPAGGSKEPTEDFSEKLNGLAQTTSLHAVVCSVLTDAYKMVVDVAIGEPPTDKIMIAGKKVQWYGAIRMLVFFKTAFDPRPEVSTLIIPTGNKHTAEKDFDGYDAGASPDKGAVAAFFPEYGLCLVNCHLEGTNKYGLCESAFDAKRVAQLAKIHATLAE 798
            METDLKPSISGLFVGSFNINAAQLTEEDARIWLQDALTHQPDVIALGFQECGTMPDVNYPNPRNFKREYSISWRRQPSPSPAGGSKEPTEDFSEKLNGLAQTTSLHAVVCSVLTDAYKMVVDVAIGEPPTDKIMIAGKKVQWYGAIRMLVFFKTAFDPRPEVSTLIIPTGNKHTAEKDFDGYDAGASPDKGAVAAFFPEYGLCLVNCHLEGTNKYGLCESAFDAKRVAQLAKIHATLAE
Sbjct:    1 METDLKPSISGLFVGSFNINAAQLTEEDARIWLQDALTHQPDVIALGFQECGTMPDVNYPNPRNFKREYSISWRRQPSPSPAGGSKEPTEDFSEKLNGLAQTTSLHAVVCSVLTDAYKMVVDVAIGEPPTDKIMIAGKKVQWYGAIRMLVFFKTAFDPRPEVSTLIIPTGNKHTAEKDFDGYDAGASPDKGAVAAFFPEYGLCLVNCHLEGTNKYGLCESAFDAKRVAQLAKIHATLAE 239
[Close]
BLAST of mRNA_H-akashiwo_Contig100.22.1 vs. uniprot
Match: A0A7S2XYE2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.560e-18
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  496 KVQWYGAIRMLVFFKTAFDPRPEVSTLIIPTGNKHTAEKDFDGYDAGASPDKGAVAAFFPEYGLCLVNCHLEGTNKYGLCESAFDAKRVAQL 771
            K +WYGAIR++VF  + FDP P V +L+IPTGNK ++ +    Y+  +SPDKGAV        L L+N HL GTNKY + E  FD +R  QL
Sbjct:    1 KTEWYGAIRVMVFVNSEFDPDPMVESLVIPTGNKFSSYRTMSEYEKYSSPDKGAVGVHLLNQNLLLLNFHLHGTNKYKVPEEEFDKERDHQL 92
[Close]
BLAST of mRNA_H-akashiwo_Contig100.22.1 vs. uniprot
Match: A0A6H5KRL9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRL9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.280e-15
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:  493 KKVQWYGAIRMLVFFKTAFDPRPEVSTLIIPTGNKHTAEKDF-DGYDAGASPDKGAVAAFFPEYG------LCLVNCHLEGTNKYGLCESAFDAKRVAQLAKIHATL 792
            K V+WYG IR+LVF +        V T++IP G+K +   D  + Y    SPDKGAVA +  +        L LVNCHL GTNKYG+ E+ FD  R+AQL  I   L
Sbjct:  306 KTVEWYGTIRLLVFVREDLYKNLRVKTVVIPAGDKPSVVADAPEDYAKDTSPDKGAVACYLEDPSSESPLQLALVNCHLYGTNKYGVKEAVFDKYRMAQLRAIDLAL 412
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3UPQ6_HETAK6.100e-174100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XYE2_9STRA1.560e-1848.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5KRL9_9PHAE6.280e-1544.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1020572..1021657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size798
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase domain protein
Ec32 orthologEc-23_000480.1
Cds size798
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.9277601-CDS-H-akashiwo_Contig100:1020571..10208251681387046.9277601-CDS-H-akashiwo_Contig100:1020571..1020825Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1020572..1020825 -
1681387046.9377818-CDS-H-akashiwo_Contig100:1021113..10216571681387046.9377818-CDS-H-akashiwo_Contig100:1021113..1021657Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1021114..1021657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.22.1prot_H-akashiwo_Contig100.22.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 1020572..1021657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.22.1

>prot_H-akashiwo_Contig100.22.1 ID=prot_H-akashiwo_Contig100.22.1|Name=mRNA_H-akashiwo_Contig100.22.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=266bp
LRLKNIGKAIRQSWRVCTVPNPTLHSIMETDLKPSISGLFVGSFNINAAQ
LTEEDARIWLQDALTHQPDVIALGFQECGTMPDVNYPNPRNFKREYSISW
RRQPSPSPAGGSKEPTEDFSEKLNGLAQTTSLHAVVCSVLTDAYKMVVDV
AIGEPPTDKIMIAGKKVQWYGAIRMLVFFKTAFDPRPEVSTLIIPTGNKH
TAEKDFDGYDAGASPDKGAVAAFFPEYGLCLVNCHLEGTNKYGLCESAFD
AKRVAQLAKIHATLAE
back to top

mRNA from alignment at H-akashiwo_Contig100:1020572..1021657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.22.1 ID=mRNA_H-akashiwo_Contig100.22.1|Name=mRNA_H-akashiwo_Contig100.22.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1086bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1020572..1021657- (Heterosigma akashiwo CCMP452)
CTGAGGCTGAAGAATATCGGGAAGGCAATAAGGCAATCGTGGAGGGTATG
CACTGTTCCAAACCCAACCCTGCATAGTATCATGGAAACTGATCTAAAGC
CAAGTATAAGTGGCTTATTTGTGGGCAGTTTCAACATTAACGCCGCTCAA
CTTACTGAAGAAGACGCTAGAATATGGCTTCAAGATGCCCTCACCCACCA
ACCTGATGTTATCGCGCTTGGTTTTCAAGAGTGCGGAACCATGCCCGATG
TAAACTACCCAAATCCTAGAAATTTTAAGCGTGAATACAGCATTTCATGG
AGAAGGCAACCAAGCCCTTCCCCAGCTGGGGGCTCAAAAGAGCCTACCGA
GGACTTTTCTGAGAAACTGAATGGGCTTGCACAAACTACCTCACTGCATG
CTGTGGTTTGCTCAGTACTCACTGATGCCTACAAGATGGTAGTTGACGTT
GCCATAGGGGAACCACCAACAGACAAGATCATGATTGCAGGGAAAAAGGT
TCAGTGGTATGGGGCTATCCGTATGCTTGTGTTCTTCAAAACAGGTGCAC
CAACCCCCTTATTCTCCGTTTCCCTTCAAACAATTGAACTGAATGAGTTG
GTGTTGAGTGAGGGACACAGAAATGAACGTTTAAGGACATGATATAGACT
TGAAGCCCTGCTGATAGAAAGTAGCAGTCTCTCAACCTGCAGGAATGAGT
CAATTCGCTAAGACTTCTTCTCTAGAAAACAAATCAGTGCACCATCAATT
CAACTATACCCCTTAACAACCAGTACTAAAACAGCTTTTCGCCCACACAC
ACACGCTTCTCCTTCCTTTCTACTGCTGGCAGCTTTTGACCCCCGTCCGG
AGGTGAGCACCCTGATCATTCCCACTGGGAATAAGCACACGGCCGAAAAA
GACTTCGACGGCTACGATGCTGGGGCCTCCCCGGATAAGGGCGCAGTGGC
CGCGTTCTTCCCAGAGTACGGGCTCTGCCTGGTGAACTGCCACCTGGAGG
GTACGAACAAGTACGGGCTTTGCGAGTCGGCCTTCGACGCCAAGCGGGTG
GCCCAGCTGGCGAAGATCCACGCCACGCTCGCGGAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig100:1020572..1021657-

>mRNA_H-akashiwo_Contig100.22.1 ID=mRNA_H-akashiwo_Contig100.22.1|Name=mRNA_H-akashiwo_Contig100.22.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=798bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1020572..1021657- (Heterosigma akashiwo CCMP452)
CTGAGGCTGAAGAATATCGGGAAGGCAATAAGGCAATCGTGGAGGGTATG
CACTGTTCCAAACCCAACCCTGCATAGTATCATGGAAACTGATCTAAAGC
CAAGTATAAGTGGCTTATTTGTGGGCAGTTTCAACATTAACGCCGCTCAA
CTTACTGAAGAAGACGCTAGAATATGGCTTCAAGATGCCCTCACCCACCA
ACCTGATGTTATCGCGCTTGGTTTTCAAGAGTGCGGAACCATGCCCGATG
TAAACTACCCAAATCCTAGAAATTTTAAGCGTGAATACAGCATTTCATGG
AGAAGGCAACCAAGCCCTTCCCCAGCTGGGGGCTCAAAAGAGCCTACCGA
GGACTTTTCTGAGAAACTGAATGGGCTTGCACAAACTACCTCACTGCATG
CTGTGGTTTGCTCAGTACTCACTGATGCCTACAAGATGGTAGTTGACGTT
GCCATAGGGGAACCACCAACAGACAAGATCATGATTGCAGGGAAAAAGGT
TCAGTGGTATGGGGCTATCCGTATGCTTGTGTTCTTCAAAACAGCTTTTG
ACCCCCGTCCGGAGGTGAGCACCCTGATCATTCCCACTGGGAATAAGCAC
ACGGCCGAAAAAGACTTCGACGGCTACGATGCTGGGGCCTCCCCGGATAA
GGGCGCAGTGGCCGCGTTCTTCCCAGAGTACGGGCTCTGCCTGGTGAACT
GCCACCTGGAGGGTACGAACAAGTACGGGCTTTGCGAGTCGGCCTTCGAC
GCCAAGCGGGTGGCCCAGCTGGCGAAGATCCACGCCACGCTCGCGGAG
back to top