mRNA_H-akashiwo_Contig100.2.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A7S2UTE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTE4_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.550e-24 Identity = 50/107 (46.73%), Postives = 73/107 (68.22%), Query Frame = 1 Query: 40 QLGVAPRINGGLLSNFQGKYVTLVGKVLN--QNGQIATFEASDGQQVTVQLSPGQHYNSQYVEITGEVNSDLTVRELKSCEYGDSFNMENYEGLVKLATGRFSSLFY 354 Q GV PRING L NF G+ V LVGKVL+ +N A ++SDG V V ++PG Y + +VEI GEV DL+++E KS +YG++F+++ Y +++LA G++ LFY Sbjct: 7 QEGVTPRINGSLRQNFVGRPVCLVGKVLDVQENSGSAVIQSSDGSSVQVVMAPGSSYLTSFVEIVGEVLPDLSIKEFKSIDYGENFDLDLYNQVLQLANGKYQKLFY 113
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: D7FVA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA2_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 2.620e-20 Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 55 PRINGGLLSNFQGKYVTLVGKVLN-QNGQI-ATFEASDGQQVTVQLSPGQHYNSQYVEITGEVNSDLTVRELKSCEYGDSFNMENYEGLVKLATGRFSSLFY 354 PR+NG +LS F G V +VGKVL+ Q G A E SDG ++TVQ++ G + SQYVE+ G ++ ++E KS ++GD F++ Y+ V L TG+FS LFY Sbjct: 7 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDMFDLRKYDEAVSLMTGKFSYLFY 108
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A6G0XXL0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXL0_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.270e-19 Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 1 Query: 52 APRINGGLLSNFQGKYVTLVGKVLNQNGQIATFEASDGQQVTVQLSPGQHYNSQYVEITGEVNSDLTVRELKSCEYGDSFNMENYEGLVKLATGRFSSLF 351 APR+N +++ F G+ V LVG + + G +A + SDG VTV PG Y+S++VE+ G V D +++E K +GD F+++NY+ LV L G+FSSLF Sbjct: 7 APRVNKAIMAQFVGRTVALVGSLESWTGSMAVVKTSDGGLVTVHPQPGADYSSKFVEVIGLVQPDGSLKEYKCTSFGDDFDLKNYDKLVHLIHGKFSSLF 106
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A024UW39_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UW39_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.020e-19 Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 1 Query: 52 APRINGGLLSNFQGKYVTLVGKVLNQNGQIATFEASDGQQVTVQLSPGQHYNSQYVEITGEVNSDLTVRELKSCEYGDSFNMENYEGLVKLATGRFSSLF 351 APR+N +L+ F G V+LVG + + G A + SD VTV PG Y+S+YVE+ G V D +++E K +GD F+++NY+ LV+L G++S+LF Sbjct: 7 APRVNKAILAQFVGHTVSLVGSIESWTGSQAVLKTSDNGFVTVHPQPGADYSSKYVEVIGSVQPDGSLKEFKCTSFGDDFDLKNYDKLVQLIHGKYSTLF 106
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A7S2DZE6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZE6_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.000e-15 Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 1 Query: 19 NFQMDTKQLGVAPRINGGLLSNFQGKYVTLVGKVLNQNGQIATFEASDGQQVTVQLSPGQHYNSQYVEITGEV-----NSDLTVRELKSCEYGDSFNMENYEGLVKLATGRFSSLF 351 N MD +GV+PR+N GLL F GK V +VG+VL+Q+ E SDG V S GQ +E+ G + +++R + C D+F+++NYEGLV L G+ LF Sbjct: 8 NHTMDG--VGVSPRVNAGLLPQFDGKRVCIVGRVLSQDADRVRVECSDGGHTIVLSSDGQFNERSIIEVVGVAGDHANDGSMSLRSERICPLDDTFDLQNYEGLVNLVNGKARHLF 121
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A2G4SIE8_RHIZD (Replication factor A protein 3 n=2 Tax=Rhizopus TaxID=4842 RepID=A0A2G4SIE8_RHIZD) HSP 1 Score: 75.5 bits (184), Expect = 2.580e-14 Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 55 PRINGGLLSNFQGKYVTLVGKVLNQNGQIATFEASDGQQVTVQLSPGQHYNSQYVEITGEVNSDLTVRELKSCEYGDSFNME 300 PR+N L + GK V LVGK+ + +G A EASD QV V L+ + +QYVE+ G+V+ D T+RE K+ GD+F+++ Sbjct: 6 PRVNSALREKYVGKTVRLVGKITSFSGNTAVLEASDHGQVLVHLNGESQWGTQYVEVIGQVDQDFTIREFKTTNMGDNFDLD 87
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A197JHU3_9FUNG (Replication factor A protein 3 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JHU3_9FUNG) HSP 1 Score: 75.5 bits (184), Expect = 2.580e-14 Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 43 LGVAPRINGGLLSNFQGKYVTLVGKVLNQNGQIATFEASDGQQVTVQLSPGQHYNSQYVEITGEVNSDLTVRELKSCEYGDSFNMENYEGLVKLATGRFSSLF 351 L R+N +L N G+ V VG+ ++ +ATF ASD VTV ++ Y +++VE+ G VN D ++ E+ S +GD FNME Y+ +V+ A +F S+F Sbjct: 3 LPTTKRVNSAMLQNCIGETVRFVGEFKSRQHPVATFLASDKGSVTVVMNDTSQYGTKFVEVIGTVNPDRSITEMISTNFGDDFNMETYDAMVRKAQ-KFPSVF 104
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A7S0XQA8_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQA8_HEMAN) HSP 1 Score: 72.0 bits (175), Expect = 1.100e-12 Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 1 Query: 52 APRINGGLLSNFQGKYVTLVGKVLNQ--NGQIATFEASDGQQVTVQLSPGQH--YNSQYVEITGEVNSDLTVRELKSCEYGDSFNMENYEGLVKLATGRFSSLF 351 APRIN LL G VT+VGKV G+ EASDG + V S Y S++VE+ G VNSD TV E + +G+ F+++ Y LV L+ G LF Sbjct: 28 APRINSTLLQQRVGMQVTVVGKVKPGFGGGEFVHLEASDGGDIVVNRSQAVQGEYGSEFVEVVGTVNSDRTVTEARFTNFGNDFDLKQYNDLVLLSNGALKHLF 131
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A1C7NGW9_9FUNG (Replication factor A protein 3 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NGW9_9FUNG) HSP 1 Score: 70.5 bits (171), Expect = 2.120e-12 Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 55 PRINGGLLSNFQGKYVTLVGKVLNQNGQIATFEASDGQQVTVQLSPGQHYNSQYVEITGEVNSDLTVRELKSCEYGDSFNMENYEGLVK 321 PRIN L + G+ V LVGK+ + +G A +ASD QV V+L+ + + YVE+ G++ SD T+RE K+ G+SF+++ +V+ Sbjct: 6 PRINSALREKYVGRVVRLVGKLHSLSGNTAVLDASDHGQVMVKLNGESQWGTDYVEVIGQIESDYTLREFKTSNLGNSFDLDMANKVVE 94
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Match: A0A433QMJ0_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QMJ0_9FUNG) HSP 1 Score: 68.2 bits (165), Expect = 3.870e-11 Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 55 PRINGGLLSNFQGKYVTLVGKVLNQNGQIATFEASDGQQVTVQLSPGQHYNSQYVEITGEVNSDLTVRELKSCEYGDSF 291 PRIN L S + G+ V +V KV+ +G+IAT EA D QV V ++ + + YVE+ V S+L++ EL S ++GDSF Sbjct: 18 PRINSELRSQYCGQIVRIVSKVIRIDGKIATIEAPDSTQVQVTMADDSQWGTLYVELIARVESNLSLTELASTDFGDSF 96 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig100.2.1 >prot_H-akashiwo_Contig100.2.1 ID=prot_H-akashiwo_Contig100.2.1|Name=mRNA_H-akashiwo_Contig100.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=110bp MDTKQLGVAPRINGGLLSNFQGKYVTLVGKVLNQNGQIATFEASDGQQVTback to top mRNA from alignment at H-akashiwo_Contig100:28283..29273- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig100.2.1 ID=mRNA_H-akashiwo_Contig100.2.1|Name=mRNA_H-akashiwo_Contig100.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=991bp|location=Sequence derived from alignment at H-akashiwo_Contig100:28283..29273- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig100:28283..29273- >mRNA_H-akashiwo_Contig100.2.1 ID=mRNA_H-akashiwo_Contig100.2.1|Name=mRNA_H-akashiwo_Contig100.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=330bp|location=Sequence derived from alignment at H-akashiwo_Contig100:28283..29273- (Heterosigma akashiwo CCMP452)back to top |