mRNA_H-akashiwo_Contig100.32.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.32.1
Unique NamemRNA_H-akashiwo_Contig100.32.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1212524..1213128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size605
Hectar predicted targeting categorysignal peptide
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.527192-UTR-H-akashiwo_Contig100:1212523..12125791681387046.527192-UTR-H-akashiwo_Contig100:1212523..1212579Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 1212524..1212579 +
1681387046.5460644-UTR-H-akashiwo_Contig100:1212912..12131281681387046.5460644-UTR-H-akashiwo_Contig100:1212912..1213128Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 1212913..1213128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.5364819-CDS-H-akashiwo_Contig100:1212579..12129121681387046.5364819-CDS-H-akashiwo_Contig100:1212579..1212912Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1212580..1212912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.32.1prot_H-akashiwo_Contig100.32.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 1212580..1212912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.32.1

>prot_H-akashiwo_Contig100.32.1 ID=prot_H-akashiwo_Contig100.32.1|Name=mRNA_H-akashiwo_Contig100.32.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=111bp
MMRQIPSLFFISLAICCSSFASGFLTPLSKKNHISSPARSAGGAKAHSQV
YGRSVWEYGARANRVKQHLSYEEFSPAVQAVVTVATGAYALVNVYAVYRL
FRKFVLKEDI*
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mRNA from alignment at H-akashiwo_Contig100:1212524..1213128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.32.1 ID=mRNA_H-akashiwo_Contig100.32.1|Name=mRNA_H-akashiwo_Contig100.32.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=605bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1212524..1213128+ (Heterosigma akashiwo CCMP452)
CGATCACGTGCAAACTCTATAACAACTTGGCAGTGGGTCTTAAACAGCTA
GTTCAAATGATGAGGCAGATTCCCAGCTTATTTTTCATTTCTCTTGCCAT
CTGCTGCAGCAGCTTCGCTTCAGGGTTCCTAACCCCCTTATCTAAAAAGA
ACCATATATCTTCGCCCGCAAGAAGTGCTGGTGGTGCCAAAGCACATAGC
CAGGTTTACGGTCGCAGTGTCTGGGAATATGGAGCAAGAGCAAACCGAGT
CAAGCAGCACCTTTCTTATGAAGAATTTAGCCCAGCTGTTCAAGCTGTGG
TAACAGTGGCGACTGGGGCGTACGCGTTGGTCAATGTATATGCTGTTTAC
CGGCTGTTTAGAAAATTTGTACTCAAGGAGGACATATGAGGAGTATGGTT
AACTCATGGTGCAATGCTGACCATGATTTTGACTGCTAACATTGAAGAAA
GCTACTGTGAATGCCTATATCAGAAGAAGTTATTGTTGTTGTGGGGATGA
GAATGGTGGGAAGTGGCGTTGGTAGTATATTGCTTCTTGATGATGATGAT
GTGTTGTTTTGCTATTCTTCCTTTTTTTGAAGTTTGTTTTGTGCAAATAT
CCGTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:1212524..1213128+

>mRNA_H-akashiwo_Contig100.32.1 ID=mRNA_H-akashiwo_Contig100.32.1|Name=mRNA_H-akashiwo_Contig100.32.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1212524..1213128+ (Heterosigma akashiwo CCMP452)
ATGATGAGGCAGATTCCCAGCTTATTTTTCATTTCTCTTGCCATCTGCTG
CAGCAGCTTCGCTTCAGGGTTCCTAACCCCCTTATCTAAAAAGAACCATA
TATCTTCGCCCGCAAGAAGTGCTGGTGGTGCCAAAGCACATAGCCAGGTT
TACGGTCGCAGTGTCTGGGAATATGGAGCAAGAGCAAACCGAGTCAAGCA
GCACCTTTCTTATGAAGAATTTAGCCCAGCTGTTCAAGCTGTGGTAACAG
TGGCGACTGGGGCGTACGCGTTGGTCAATGTATATGCTGTTTACCGGCTG
TTTAGAAAATTTGTACTCAAGGAGGACATATGA
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