prot_H-akashiwo_Contig100.34.2 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig100.34.2
Unique Nameprot_H-akashiwo_Contig100.34.2
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length106
Homology
BLAST of mRNA_H-akashiwo_Contig100.34.2 vs. uniprot
Match: A0A7S4DAL7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAL7_HETAK)

HSP 1 Score: 147 bits (371), Expect = 6.160e-39
Identity = 61/93 (65.59%), Postives = 83/93 (89.25%), Query Frame = 0
Query:    1 HPSLRREIETVLDFTSTSKFGVYDKCDLHIFTDGSKDDKDNTGCGFAIFKGYDLLNPVLRVIFHLPRHVSVYQAELVAIREAIKVCIDKWAAT 93
            HP+ R  +ET+L+F+ST+KFGVY+KCDLH+FTDGSKDD++NTGCGF +FKG +LL P++++ FHLP+HVSVYQAEL+AIREA+ +CI KW+ +
Sbjct:  566 HPAARAVVETILEFSSTNKFGVYNKCDLHVFTDGSKDDENNTGCGFVVFKGTNLLVPLIKIAFHLPKHVSVYQAELIAIREALSLCISKWSTS 658          
BLAST of mRNA_H-akashiwo_Contig100.34.2 vs. uniprot
Match: A0A7T8JY25_CALRO (RNase H type-1 domain-containing protein n=2 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8JY25_CALRO)

HSP 1 Score: 54.7 bits (130), Expect = 1.960e-6
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 0
Query:    5 RREIETVLDFTSTSKFGV----YDKCDLHIFTDGSKDDKDNTGCGFAIFKGYDLLNPVLRVIFHLPRHVSVYQAELVAIREAIKVCIDK 89
            R ++    D+ + ++  V     +  D+ I+TDGSKDDKDNTG G+AI +G D+     +    L +  SV+QAE++AI +++K  +++
Sbjct:  127 RLQLNETSDYITGNRIWVDNSHVENSDIIIYTDGSKDDKDNTGAGWAITRG-DI--SFYQSYISLNKEASVFQAEVIAITQSVKALLEQ 212          
BLAST of mRNA_H-akashiwo_Contig100.34.2 vs. uniprot
Match: UPI001FA3FA66 (Uncharacterized protein n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001FA3FA66)

HSP 1 Score: 49.3 bits (116), Expect = 5.170e-5
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0
Query:   29 HIFTDGSKDDKDNTGCGFAIFKGYDLLNPVLRVIFHLPRHVSVYQAELVAIREAIKVCID 88
            HI+TDGSK +    G  F +F  ++   P LR +F L    S+YQAEL+A+ EAI   +D
Sbjct:   88 HIYTDGSKFEN-YVGAAFVVFSVHENRIPFLRKMFRLDNRCSIYQAELLAVVEAINWVVD 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.34.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4DAL7_HETAK6.160e-3965.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7T8JY25_CALRO1.960e-634.83RNase H type-1 domain-containing protein n=2 Tax=C... [more]
UPI001FA3FA665.170e-543.33Uncharacterized protein n=1 Tax=Dermatophagoides f... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 7..99
e-value: 1.3E-7
score: 33.4
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 28..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1275166..1275955 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.34.2mRNA_H-akashiwo_Contig100.34.2Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig100 1275166..1276010 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig100.34.2 ID=prot_H-akashiwo_Contig100.34.2|Name=mRNA_H-akashiwo_Contig100.34.2|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=106bp
HPSLRREIETVLDFTSTSKFGVYDKCDLHIFTDGSKDDKDNTGCGFAIFK
GYDLLNPVLRVIFHLPRHVSVYQAELVAIREAIKVCIDKWAATCRKVKAQ
GLPQV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf