mRNA_H-akashiwo_Contig100.20.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.20.1
Unique NamemRNA_H-akashiwo_Contig100.20.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig100.20.1 vs. uniprot
Match: A0A7S4D4X7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4X7_HETAK)

HSP 1 Score: 153 bits (387), Expect = 2.780e-45
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 AKIIIYHCEADTDDNEHGLILRPIESPPIALGALTNGDKKWVCLQDFLPSGFITPDLFQVKSRLKAELCLDG 216
            AKIIIYHCEADTDDNEHGLILRPIESPPIALGALTNGDKKWVCLQDFLPSGFITPDLFQVKSRLKAELCLDG
Sbjct:   93 AKIIIYHCEADTDDNEHGLILRPIESPPIALGALTNGDKKWVCLQDFLPSGFITPDLFQVKSRLKAELCLDG 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D4X7_HETAK2.780e-45100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:733296..733938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons3
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.0166261-CDS-H-akashiwo_Contig100:733297..7333181681387046.0166261-CDS-H-akashiwo_Contig100:733297..733318Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 733298..733318 -
1681387046.026135-CDS-H-akashiwo_Contig100:733487..7335981681387046.026135-CDS-H-akashiwo_Contig100:733487..733598Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 733488..733598 -
1681387046.0348961-CDS-H-akashiwo_Contig100:733854..7339381681387046.0348961-CDS-H-akashiwo_Contig100:733854..733938Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 733855..733938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.20.1prot_H-akashiwo_Contig100.20.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 733298..733938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.20.1

>prot_H-akashiwo_Contig100.20.1 ID=prot_H-akashiwo_Contig100.20.1|Name=mRNA_H-akashiwo_Contig100.20.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=72bp
AKIIIYHCEADTDDNEHGLILRPIESPPIALGALTNGDKKWVCLQDFLPS
GFITPDLFQVKSRLKAELCLDG
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mRNA from alignment at H-akashiwo_Contig100:733296..733938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.20.1 ID=mRNA_H-akashiwo_Contig100.20.1|Name=mRNA_H-akashiwo_Contig100.20.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=643bp|location=Sequence derived from alignment at H-akashiwo_Contig100:733296..733938- (Heterosigma akashiwo CCMP452)
GCAAAGATCATTATTTACCATTGTGAGGCTGACACTGATGATAATGAACA
TGGGCTCATTCTCCGACCAATCGAAAGCCCCCCAGTAAGTCATGCAACTT
TGAGGTAAGGTCTTGAAGGATTACCTAGATACAGATGATTCGAGTTACTG
TACATGTATAAATGCTACAAGTATTACTTCAAGGTAACCGGATTCAAGCT
CATTCTTGTAAGAAGGAAGAGTTGTTTCGAATGATTTCATTAGAAACGAC
AACCCTTTAAATGGAGTGGCTCAACCCTTTAAACCAACCCCTCCACTTTA
TTTTGAAAATAGTGCTTTATCGTTGCATTCATGTGTGTAGATTGCTCTCG
GTGCGCTCACCAATGGTGATAAAAAATGGGTGTGTTTACAAGACTTCCTG
CCTTCTGGCTTTATAACCCCTGACTTATTCCAAGTAAAATCTCGACTGAA
GGTGACGAAGTAATCATTTGTGCCGCGAAATGTTGTGTTTCATTTACTCT
TCTTCTCGAGAAATTCAAAGAATATCATCAACTATAAAATCTCCCCCTAA
TGTCCACTGGGTACCCCCCCTCACACCAATCATGATGGTAACAAAGTATA
TTTCATCGCACCTCCCTCAGGCTGAACTTTGCTTGGATGGCGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:733296..733938-

>mRNA_H-akashiwo_Contig100.20.1 ID=mRNA_H-akashiwo_Contig100.20.1|Name=mRNA_H-akashiwo_Contig100.20.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=216bp|location=Sequence derived from alignment at H-akashiwo_Contig100:733296..733938- (Heterosigma akashiwo CCMP452)
GCAAAGATCATTATTTACCATTGTGAGGCTGACACTGATGATAATGAACA
TGGGCTCATTCTCCGACCAATCGAAAGCCCCCCAATTGCTCTCGGTGCGC
TCACCAATGGTGATAAAAAATGGGTGTGTTTACAAGACTTCCTGCCTTCT
GGCTTTATAACCCCTGACTTATTCCAAGTAAAATCTCGACTGAAGGCTGA
ACTTTGCTTGGATGGC
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