mRNA_H-akashiwo_Contig10.30.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.30.1
Unique NamemRNA_H-akashiwo_Contig10.30.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: A0A7S2V611_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V611_9STRA)

HSP 1 Score: 209 bits (532), Expect = 9.350e-64
Identity = 101/180 (56.11%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  143 MNTIQSGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEKGEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGELPQEFLDKHKAFQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFYGRTW 682
            M++IQSGTSH I+PK+IVL  ++IG+G +LG Y+SEH+ A R  A L+ K  A K+ +D+L  EK EY+DI++ L+ H+ EW E+GE+P EF++KHKAF   AS L   M+ +H  L++KE+ELYDKEALLEYQEE ++DSED E+RM+ YINEMG +L    E LPEGLEDE++YG+ W
Sbjct:    1 MHSIQSGTSHYIIPKRIVLFTLVIGVGMMLGMYLSEHMRAQRMTAVLERKNAAVKEKNDQLSSEKSEYEDIVKQLEDHMEEWTEEGEIPAEFMEKHKAFHAKASNLIEQMHAVHTLLMEKEYELYDKEALLEYQEEQLMDSEDFEDRMIGYINEMGPKLKSHNEALPEGLEDEVWYGKDW 180          
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: A0A6V1MQV1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MQV1_HETAK)

HSP 1 Score: 172 bits (436), Expect = 1.600e-48
Identity = 88/174 (50.57%), Postives = 123/174 (70.69%), Query Frame = 2
Query:  149 TIQSGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEKGEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGELPQEFLDKHKAFQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFY 670
            +I SGTSHLI+PK+IVL  I+IG+G +LG Y+SEH+ A+R    LK K +A K  ++ L  EK  Y D+L+ L+ H+ EWAE+G +P EFLDKHK F + A  L   +  +H  L++KE+EL DKEALLEYQE+ ++DSE++E+RM+ YIN M  +L  + + LP GLE E F+
Sbjct:    4 SITSGTSHLIIPKRIVLTTIMIGLGAMLGMYLSEHMRAARTATILKTKNQAIKDKNELLVSEKEGYSDMLKELEGHMTEWAEEGGVPDEFLDKHKGFHDIAEALMKQVQSVHDLLIEKEYELIDKEALLEYQEQQLMDSEELEDRMVGYINTMATKLVALKQPLPAGLEAEPFF 177          
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: A0A7S4E6L8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6L8_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.010e-33
Identity = 75/177 (42.37%), Postives = 112/177 (63.28%), Query Frame = 2
Query:  143 MNTIQSGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEKGEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGELPQEFLDKHKAFQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFYG 673
            M+ IQSG+SHLI+PK+I     L  +G + G  +S HL+  + E  L EK  AAK+A+ +L GEK +Y+ +   L   + E A+DG++ QE   +   F + A +L  G+  +   L +KEF+L++KE LLEYQEE ++++ED+E  M  YINEM  QL K G+ LP GL D+ ++G
Sbjct:    1 MSGIQSGSSHLIIPKRIFAVVTLGALGGLSGVLVSNHLYNRQVEQFLHEKTSAAKRANTQLTGEKDDYRALFNKLTVQMDEDAKDGKITQE---ESGGFHQLAQRLMEGLQSMQDLLEEKEFQLWEKEGLLEYQEERLVNTEDLETEMAAYINEMASQLLKRGKALPAGLADQPYFG 174          
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: A0A7S2D3M5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3M5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.130e-27
Identity = 74/209 (35.41%), Postives = 117/209 (55.98%), Query Frame = 2
Query:  158 SGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEKGEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGEL-PQEFLDKHKAFQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFYGRTWFDGRK*GRREGDQ*RVQRQNVFPRFLIHHRSAS 781
            SGT H I+ KKIV    L+ +G  LG +I+ ++ + +    LK K  A K  +  L+  K EY+ I   L  HL EW    +L PQ+  ++  +F++ A +L  G++++   L +KEF+L++KE LLEYQEE +++SED+E  M  YINE+ + L K  + LPEGL+ + ++           + EG++       V  + L H R AS
Sbjct:   15 SGTKHFIISKKIVWMTFLVALGLFLGMFIATNVRSRQIHDHLKSKSVAVKLTNKDLKDGKEEYQAIFMELRKHLEEWKVGHDLSPQDHENRVSSFRDQAGQLMEGLSDMQVLLEEKEFQLWEKEGLLEYQEERLMNSEDLELEMASYINELAQILKKEKQPLPEGLDKKPYF-----------QEEGEEQERSSFEVRRKLLSHPRDAS 212          
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: A0A7S3JPW0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPW0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.420e-25
Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  152 IQSGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEKGEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGELPQEFLDKHKA-FQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFYGRT 679
            IQS   HLIVPK+I+L  +L+  G   G  IS HL+A R E  L+ K  + K  H +LE E+     +   L A L +    G+  ++   +  A FQ+ A++L  G+  +   L +KEF+L++KE LLEYQEE +L++ED+E  M  YIN M   L    + LPEGL D+ ++  T
Sbjct:    2 IQSSAHHLIVPKRILLISVLVATGVFSGVIISNHLYARRVETFLESKHRSVKNQHKQLEEERXXXXXLFSKLTAQLEQDQGKGDGERDLSKESVASFQQLATRLLEGLQSMQDLLEEKEFQLWEKEGLLEYQEERLLNTEDLELEMTSYINTMAAALLAKNKTLPEGLADQPYFDPT 178          
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: F0YC62_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC62_AURAN)

HSP 1 Score: 105 bits (261), Expect = 2.220e-23
Identity = 64/176 (36.36%), Postives = 107/176 (60.80%), Query Frame = 2
Query:  152 IQSGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEKGEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGELPQEFLDKHK--AFQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFYG 673
            I SG+SHLI+PKKI+   +L  +G   G  +S H+++ R E  L +K ++  +++ +LEGE+ +Y+ +   L   L +  ++G+     L K +  +F + A++L  G+  +   L +KEF+L++KE LLEYQEE ++++ED+E  M  +IN M   L      LPEGL D+ +YG
Sbjct:    2 IVSGSSHLIIPKKILAVSLLALLGGFTGVLVSNHVYSRRVETFLHQKTKSVAKSNKQLEGEQEDYRALFNKLTWQLDQ--DEGKGTDRDLSKDQVGSFHQLATRLLEGLQSMQDLLEEKEFQLWEKEGLLEYQEERLMNTEDLELEMSGFINGMAAALLAKNATLPEGLTDQPYYG 175          
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: A0A8J2SW38_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SW38_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.770e-22
Identity = 61/177 (34.46%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  152 IQSGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEKGEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGELPQEF-LDKHKAFQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFYGRT 679
            I SG+ H+IV K  +   +L+ +  + GT I+E L   R +A  ++     K+ + +L  EK +YK+I   +   L +W    +L  +   ++  +F+E++  L  G++++   L +KEF+L++KE LLEYQEE +LDSED E +M  YIN + + +  +   LPEGLE++ +YG +
Sbjct:   16 IISGSQHVIVSKAGLFQVVLLLLAALGGTVIAEKLRLQRNKARQRDLHSGIKETNKRLGAEKEDYKNIFGQMSKQLDDWRSAHDLNVDSNRERLASFKESSEALMNGLDDVRTVLEEKEFQLWEKEGLLEYQEERLLDSEDQEVQMALYINILARSVLALNLTLPEGLEEQPYYGES 192          
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: A0A7S3NPH2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPH2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.860e-20
Identity = 58/176 (32.95%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  158 SGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEKGEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGELPQEFLDKHK----AFQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFYG 673
            +G  H+I+ ++ V   ++I +G + G+  +E        + L++   A K  + +L+ EK +YK++ + +   L EW   GE  Q   +K K    +F+E +  L  G++++   L +KEF+L++KE LLEYQEE +LDSED E +M  YIN + + +  +   LP+GLE++ + G
Sbjct:   19 TGARHVIISRRAVFQVMVIVIGLLAGSIAAERFRLKHNSSRLRDSKGAMKGTNLRLKAEKDDYKNLFKQMAEQLEEWKSTGEHDQN-PEKQKTHMHSFKEMSEALMIGLDDVRTVLEEKEFQLWEKEGLLEYQEERLLDSEDQEVQMALYINLLAQHMIALNLTLPKGLEEQPYQG 193          
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Match: F0YC61_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC61_AURAN)

HSP 1 Score: 73.9 bits (180), Expect = 2.390e-12
Identity = 36/81 (44.44%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  434 AFQETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMKYINEMGKQLSKMGEGLPEGLEDEIFYGR 676
            +F+E++  L  G++++   L +KEF+L++KE LLEYQEE +LDSED E +M  YIN + + +  +   LPEGLE++ +YG+
Sbjct:   25 SFKESSEALMLGLDDVRTVLEEKEFQLWEKEGLLEYQEERLLDSEDQEVQMALYINMLAQSMLALNLTLPEGLEEQPYYGQ 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S2V611_9STRA9.350e-6456.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1MQV1_HETAK1.600e-4850.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4E6L8_9STRA1.010e-3342.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2D3M5_9STRA3.130e-2735.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3JPW0_9STRA2.420e-2538.98Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YC62_AURAN2.220e-2336.36Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SW38_9STRA3.770e-2234.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NPH2_9STRA1.860e-2032.95Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YC61_AURAN2.390e-1244.44Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:1768754..1769755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1002
Hectar predicted targeting categorysignal anchor
Exons1
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.0365431-UTR-H-akashiwo_Contig10:1768753..17688951681387043.0365431-UTR-H-akashiwo_Contig10:1768753..1768895Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 1768754..1768895 +
1681387043.0524423-UTR-H-akashiwo_Contig10:1769453..17697551681387043.0524423-UTR-H-akashiwo_Contig10:1769453..1769755Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 1769454..1769755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.044683-CDS-H-akashiwo_Contig10:1768895..17694531681387043.044683-CDS-H-akashiwo_Contig10:1768895..1769453Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 1768896..1769453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.30.1prot_H-akashiwo_Contig10.30.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 1768896..1769453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.30.1

>prot_H-akashiwo_Contig10.30.1 ID=prot_H-akashiwo_Contig10.30.1|Name=mRNA_H-akashiwo_Contig10.30.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=186bp
MNTIQSGTSHLIVPKKIVLGFILIGMGCILGTYISEHLHASRREAALKEK
GEAAKQAHDKLEGEKGEYKDILENLDAHLAEWAEDGELPQEFLDKHKAFQ
ETASKLAAGMNELHYKLLDKEFELYDKEALLEYQEEFILDSEDMEERMMK
YINEMGKQLSKMGEGLPEGLEDEIFYGRTWFDGRK*
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mRNA from alignment at H-akashiwo_Contig10:1768754..1769755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.30.1 ID=mRNA_H-akashiwo_Contig10.30.1|Name=mRNA_H-akashiwo_Contig10.30.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1002bp|location=Sequence derived from alignment at H-akashiwo_Contig10:1768754..1769755+ (Heterosigma akashiwo CCMP452)
AAATCAATCACTTTGATTCCATTCAGATTGGCAGCCAGGACAGAGCCAAG TTTTCGCTTTTTCTGGCGTTCAAACTGAGCCAATCCATACATAGTACCCC TCCCCACATCCGCTGTTAACAGCCTTCGGGTTTTATTTGATTATGAATAC AATTCAATCTGGTACTTCGCACTTGATAGTGCCGAAGAAAATCGTTCTGG GTTTCATTTTGATTGGTATGGGATGTATTCTTGGCACATACATTTCAGAG CATCTACACGCCTCAAGAAGAGAGGCTGCTCTGAAGGAGAAAGGTGAAGC TGCAAAGCAAGCCCATGATAAACTCGAAGGGGAAAAGGGAGAATACAAAG ATATTTTAGAAAACCTCGACGCCCACTTGGCAGAATGGGCAGAAGACGGC GAGCTTCCTCAGGAGTTCCTGGATAAGCATAAAGCTTTCCAAGAGACAGC AAGTAAGCTAGCTGCTGGGATGAATGAACTGCACTACAAACTGCTCGACA AAGAGTTCGAGCTTTACGACAAGGAGGCCCTGCTAGAGTACCAGGAGGAA TTCATCCTAGACTCGGAGGACATGGAGGAGCGCATGATGAAGTACATAAA TGAAATGGGCAAGCAACTTTCAAAAATGGGCGAAGGCCTGCCGGAGGGGC TGGAGGATGAAATCTTTTATGGACGGACCTGGTTTGATGGGAGGAAGTGA GGAAGAAGGGAGGGAGATCAGTGAAGGGTGCAAAGGCAAAATGTCTTTCC CCGCTTTCTCATTCATCACAGAAGTGCGAGCCATAATCTGCTTGCGCAAA GTACATCTTGATTTTGGGTGTGCACATCTGTCCCTGCTTTCACATTCATC ACAGAAGTGCGAGCCACAATCTGCTTGTGCAAAGTATATGAACATATATA TCTTGATTTTGGTTGTGCATGTTTTCGTAGTATTGTGTTTCTACTTTGCA GGACTTGCTTCCCTACTGCTGCGATGGTAAAAAAGATAAACGTAAACAAT AA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:1768754..1769755+

>mRNA_H-akashiwo_Contig10.30.1 ID=mRNA_H-akashiwo_Contig10.30.1|Name=mRNA_H-akashiwo_Contig10.30.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=558bp|location=Sequence derived from alignment at H-akashiwo_Contig10:1768754..1769755+ (Heterosigma akashiwo CCMP452)
ATGAATACAATTCAATCTGGTACTTCGCACTTGATAGTGCCGAAGAAAAT
CGTTCTGGGTTTCATTTTGATTGGTATGGGATGTATTCTTGGCACATACA
TTTCAGAGCATCTACACGCCTCAAGAAGAGAGGCTGCTCTGAAGGAGAAA
GGTGAAGCTGCAAAGCAAGCCCATGATAAACTCGAAGGGGAAAAGGGAGA
ATACAAAGATATTTTAGAAAACCTCGACGCCCACTTGGCAGAATGGGCAG
AAGACGGCGAGCTTCCTCAGGAGTTCCTGGATAAGCATAAAGCTTTCCAA
GAGACAGCAAGTAAGCTAGCTGCTGGGATGAATGAACTGCACTACAAACT
GCTCGACAAAGAGTTCGAGCTTTACGACAAGGAGGCCCTGCTAGAGTACC
AGGAGGAATTCATCCTAGACTCGGAGGACATGGAGGAGCGCATGATGAAG
TACATAAATGAAATGGGCAAGCAACTTTCAAAAATGGGCGAAGGCCTGCC
GGAGGGGCTGGAGGATGAAATCTTTTATGGACGGACCTGGTTTGATGGGA
GGAAGTGA
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