mRNA_H-akashiwo_Contig1278.7.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK) HSP 1 Score: 258 bits (659), Expect = 3.720e-78 Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 1
Query: 1 DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLGGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLR 390
DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTL KRFTSPS NCLAASYHLLRYLWWTEDKGVTLGGPL LTAYADADFCSERHKGRSRSG+AIFLG SPIIWSS+MQ+CVTRNTTEAEY+SLR
Sbjct: 769 DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLR 898
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK) HSP 1 Score: 121 bits (304), Expect = 1.190e-30 Identity = 55/121 (45.45%), Postives = 83/121 (68.60%), Query Frame = 1
Query: 28 EAKKFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLGGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLR 390
+A +RS+VGT+ W+A WT PE+A+++H L + +P A RYL T+ + + LGG L L A++D+DFC++R G+S +GY +FLG +PI+WSSK+Q VT +T EAEY++LR
Sbjct: 131 DANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALR 251
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: UPI000CE1CC1A (uncharacterized protein LOC111994134 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1CC1A) HSP 1 Score: 93.6 bits (231), Expect = 5.150e-20 Identity = 51/134 (38.06%), Postives = 85/134 (63.43%), Query Frame = 1
Query: 7 SRRLSTFEAK------KFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISL 387
S RL+ F+ ++RS+VG + +L +T P++A+S+H LC+ +P+ + L A+ +LRY+ T G+ PL L+A++DAD+ + +S +G +FLGSSPI WSSK Q+ ++R++TE EY +L
Sbjct: 99 SVRLTPFDGSALSDPTEYRSMVGALQYLT-FTRPDLAFSVHQLCQFMQNPTTSHLEAAKRVLRYVKGTLHFGIHFAPSPLSLSAFSDADWAGDPTNRKSTTGMLVFLGSSPISWSSKKQSTISRSSTETEYRAL 231
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A2N9GA49_FAGSY (Apple domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GA49_FAGSY) HSP 1 Score: 94.7 bits (234), Expect = 5.360e-20 Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 1
Query: 13 RLSTFEAKK------FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLRL 393
RLS + +K +RSLVG +++L +T P++++++H +C+ SP+ L A+ +LRYL T G++ GPL+L+A+ DAD+ + RS SG ++LG +PI WS+K Q V+R++TE+EY +L L
Sbjct: 355 RLSLHDGEKLQDPHAYRSLVGALHYLT-FTRPDLSFAVHQVCQYMASPTSIHLTAAKRILRYLKGTLHLGLSFRPGPLKLSAFTDADWAGDPDDRRSTSGLLVYLGPNPITWSAKKQLTVSRSSTESEYRALAL 487
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A2N9HVC4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVC4_FAGSY) HSP 1 Score: 94.7 bits (234), Expect = 5.670e-20 Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 1
Query: 13 RLSTFEAKK------FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLRL 393
RLS + +K +RSLVG +++L +T P++++++H +C+ SP+ L A+ +LRYL T G++ GPL+L+A+ DAD+ + RS SG ++LG +PI WS+K Q V+R++TE+EY +L L
Sbjct: 1224 RLSLHDGEKLQDPHAYRSLVGALHYLT-FTRPDLSFAVHQVCQYMASPTSIHLTAAKRILRYLKGTLHLGLSFRPGPLKLSAFTDADWAGDPDDRRSTSGLLVYLGPNPITWSAKKQLTVSRSSTESEYRALAL 1356
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A2N9F8M1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8M1_FAGSY) HSP 1 Score: 94.7 bits (234), Expect = 5.670e-20 Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 1
Query: 13 RLSTFEAKK------FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLRL 393
RLS + +K +RSLVG +++L +T P++++++H +C+ SP+ L A+ +LRYL T G++ GPL+L+A+ DAD+ + RS SG ++LG +PI WS+K Q V+R++TE+EY +L L
Sbjct: 1237 RLSLHDGEKLQDPHAYRSLVGALHYLT-FTRPDLSFAVHQVCQYMASPTSIHLTAAKRILRYLKGTLHLGLSFRPGPLKLSAFTDADWAGDPDDRRSTSGLLVYLGPNPITWSAKKQLTVSRSSTESEYRALAL 1369
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A5N5FE81_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FE81_9ROSA) HSP 1 Score: 93.6 bits (231), Expect = 8.090e-20 Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 40 FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISL 387
+RSLVG + +L +T P++A+S+H +C+ +P + A +LRYL T G++ G L+L A++DAD+ + + RS +G +FLG+SPI WSSK Q V+R++TEAEY +L
Sbjct: 197 YRSLVGALQYLT-FTRPDIAFSVHQVCQFMQNPMVSHFTAVKRILRYLKGTMQFGISYTKGDLQLKAFSDADWAGDPNDRRSTTGLVVFLGNSPISWSSKKQQTVSRSSTEAEYRAL 312
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: C6JS24_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JS24_SORBI) HSP 1 Score: 93.2 bits (230), Expect = 1.860e-19 Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 19 STFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTL--GGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEY 378
S + +RSL G + +L +T P++AY++ +C P ++ L A+ +LRYL T D G+ + P +LT Y DAD+ RS SGYA+FLGSS + WSSK Q V+R++ EAEY
Sbjct: 528 SVTDPTAYRSLAGALQYLT-FTRPDIAYAVQQICLHMHDPRESHLTAAKRILRYLKGTLDYGLVIPRSSPSQLTVYTDADWAGCPDTRRSTSGYAVFLGSSLVSWSSKRQPTVSRSSAEAEY 648
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A2N9GTX6_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GTX6_FAGSY) HSP 1 Score: 93.2 bits (230), Expect = 1.870e-19 Identity = 51/134 (38.06%), Postives = 86/134 (64.18%), Query Frame = 1
Query: 13 RLSTFEAKK------FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLRL 393
RLS + +K +RSLVG +++L +T P++++++H +C+ SP+ L A+ +LRYL T G++ GPL+L+A+ DAD+ + RS SG ++LG +PI WS+K Q V+R++TE+E+ +L L
Sbjct: 542 RLSLHDGEKLQDPHAYRSLVGALHYLT-FTRPDLSFAVHQVCQYMASPTSIHLTAAKRILRYLKGTLHLGLSFRPGPLKLSAFTDADWAGDPDDRRSTSGLLVYLGPNPITWSAKKQLTVSRSSTESEFRALAL 674
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A507DAM3_9FUNG (DNA-directed DNA polymerase n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DAM3_9FUNG) HSP 1 Score: 93.2 bits (230), Expect = 1.890e-19 Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 1
Query: 40 FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLGG---PLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAE 375
+RS+VG++ + + T P++A + + P++ L A +LRYL T+D G+ LGG PL L+A+ DAD+ ++ RSRSG +FLG+SPIIWSS+ Q+C +TTEAE
Sbjct: 756 YRSMVGSLLYASNMTRPDIATPVALAGQYVVDPAERHLVAVKKILRYLAGTKDHGLVLGGRTAPLELSAFVDADYNNDVDDRRSRSGVLVFLGNSPIIWSSRKQHCNVISTTEAE 870 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1278.7.1 >prot_H-akashiwo_Contig1278.7.1 ID=prot_H-akashiwo_Contig1278.7.1|Name=mRNA_H-akashiwo_Contig1278.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=134bp DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCback to top mRNA from alignment at H-akashiwo_Contig1278:258533..258934+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1278.7.1 ID=mRNA_H-akashiwo_Contig1278.7.1|Name=mRNA_H-akashiwo_Contig1278.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=402bp|location=Sequence derived from alignment at H-akashiwo_Contig1278:258533..258934+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1278:258533..258934+ >mRNA_H-akashiwo_Contig1278.7.1 ID=mRNA_H-akashiwo_Contig1278.7.1|Name=mRNA_H-akashiwo_Contig1278.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=402bp|location=Sequence derived from alignment at H-akashiwo_Contig1278:258533..258934+ (Heterosigma akashiwo CCMP452)back to top |