mRNA_H-akashiwo_Contig1256.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1256.4.1
Unique NamemRNA_H-akashiwo_Contig1256.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1256.4.1 vs. uniprot
Match: A0A7S3UXJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXJ8_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 3.900e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:  175 IGDSSAYDQSENLDLDTIGLTFLLNGLAGLTFL 273
            IGDSSAYDQSENLDLDTIGLTFLLNGLAGLTFL
Sbjct:    1 IGDSSAYDQSENLDLDTIGLTFLLNGLAGLTFL 33
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1256.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UXJ8_HETAK3.900e-11100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1256contigH-akashiwo_Contig1256:118169..118557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size273
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387134.7955835-UTR-H-akashiwo_Contig1256:118168..1182461681387134.7955835-UTR-H-akashiwo_Contig1256:118168..118246Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1256 118169..118246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387134.8060071-CDS-H-akashiwo_Contig1256:118246..1183561681387134.8060071-CDS-H-akashiwo_Contig1256:118246..118356Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1256 118247..118356 +
1681387134.8156319-CDS-H-akashiwo_Contig1256:118472..1185571681387134.8156319-CDS-H-akashiwo_Contig1256:118472..118557Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1256 118473..118557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1256.4.1prot_H-akashiwo_Contig1256.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1256 118247..118557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1256.4.1

>prot_H-akashiwo_Contig1256.4.1 ID=prot_H-akashiwo_Contig1256.4.1|Name=mRNA_H-akashiwo_Contig1256.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=65bp
MGYTSISEMALAKAGEAGQMMYPHVKRRLSWWIGDSSAYDQSENLDLDTI
GLTFLLNGLAGLTFL
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mRNA from alignment at H-akashiwo_Contig1256:118169..118557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1256.4.1 ID=mRNA_H-akashiwo_Contig1256.4.1|Name=mRNA_H-akashiwo_Contig1256.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=389bp|location=Sequence derived from alignment at H-akashiwo_Contig1256:118169..118557+ (Heterosigma akashiwo CCMP452)
GTTGTGCTGGTGATGAGAGAGATAATAGGCACATAAATGCATCATCTTTC
TCGCATCTAAGTGCAGCTTTCCGGTTTGATGGGATATACTTCCATATCGG
AGATGGCCTTGGCCAAGGCCGGGGAGGCTGGCCAAATGATGTACCCTCAT
GTCAAACGACGGTTGAGTTGGTGGATTGGAGACTCAAGGTATTTCAGTAT
TTGTAGCCATGTTTTCAGAAATATGCGCGTTGAAAAGTTTCTGAAGCGAT
CAGACCTCATTCAACCGTCATCTACCGTGTGCTTTCAAATAACCTGGGGG
GCAGTGCATATGACCAGTCCGAGAATTTGGACCTTGACACAATCGGGCTC
ACATTTTTGCTTAACGGCTTGGCTGGCTTGACTTTTCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1256:118169..118557+

>mRNA_H-akashiwo_Contig1256.4.1 ID=mRNA_H-akashiwo_Contig1256.4.1|Name=mRNA_H-akashiwo_Contig1256.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=195bp|location=Sequence derived from alignment at H-akashiwo_Contig1256:118169..118557+ (Heterosigma akashiwo CCMP452)
ATGGGATATACTTCCATATCGGAGATGGCCTTGGCCAAGGCCGGGGAGGC
TGGCCAAATGATGTACCCTCATGTCAAACGACGGTTGAGTTGGTGGATTG
GAGACTCAAGTGCATATGACCAGTCCGAGAATTTGGACCTTGACACAATC
GGGCTCACATTTTTGCTTAACGGCTTGGCTGGCTTGACTTTTCTG
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