mRNA_H-akashiwo_Contig1251.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1251.15.1
Unique NamemRNA_H-akashiwo_Contig1251.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1251.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1251contigH-akashiwo_Contig1251:138740..142236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size553
Hectar predicted targeting categoryother localisation
Exons3
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.5879076-CDS-H-akashiwo_Contig1251:138740..1388951681387133.5879076-CDS-H-akashiwo_Contig1251:138740..138895Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 138741..138895 -
1681387133.5984602-CDS-H-akashiwo_Contig1251:141669..1418621681387133.5984602-CDS-H-akashiwo_Contig1251:141669..141862Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 141670..141862 -
1681387133.6083837-CDS-H-akashiwo_Contig1251:142032..1422361681387133.6083837-CDS-H-akashiwo_Contig1251:142032..142236Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 142033..142236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1251.15.1prot_H-akashiwo_Contig1251.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1251 138741..142236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1251.15.1

>prot_H-akashiwo_Contig1251.15.1 ID=prot_H-akashiwo_Contig1251.15.1|Name=mRNA_H-akashiwo_Contig1251.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=184bp
TTENWPKKANYISTHNHCNTTSGFDCIRTMRENCAGNDIKVGGSRSSSRL
KMGTFRESLLLHGSHWKMVLQIQDGVSLSATQKWWHENHTCMRNRSRTGS
GDILAGLGHLPLLKADSMRATALNHFPSALKPGHPCPSPKRSKRPWEAMM
GSNDAGSRPAAAAPPLARSDDGNGGPVRRSAEAT
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mRNA from alignment at H-akashiwo_Contig1251:138740..142236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1251.15.1 ID=mRNA_H-akashiwo_Contig1251.15.1|Name=mRNA_H-akashiwo_Contig1251.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3497bp|location=Sequence derived from alignment at H-akashiwo_Contig1251:138740..142236- (Heterosigma akashiwo CCMP452)
ACGACAGAGAATTGGCCCAAGAAGGCCAACTATATAAGTACCCACAATCA
TTGTAATACCACATCTGGGTTTGATTGCATCCGAACAATGCGCGAAAACT
GTGCAGGAAATGATATCAAAGTGGGAGGATCTCGTTCTTCCAGTCGTCTA
AAAATGGGCACTTTCAGAGAAAGCCTGTTGCTCCATGGTTCTCACTGGAA
AATGGTAGAAGAATTACATATTGACGCAAAATTTCCTTGAAAAACTAGTT
GGAAATCGTTTGTCGTTGTGAGATGCAATCTACTCTGAATGAATATTTAG
ACTACCCCTAATCCTATGTACATTGTTTACCAAACTCCCACCACCAAAAT
ATGTACTACAATTAAAAATCCAAGGTGCTCCAAATTCAAGATGGCGTCTC
ATTGAGTGCCACCCAAAAATGGTGGCATGAAAATCATACTTGTATGCGAA
ACAGAAGTAGGACAGGCTCTGGTGATATCCTGGCTGGCCTTGGTCATTTG
CCACTTTTGAAGGCTGATAGTATGAGAGCAACAGCTCTCAATCATTTCCC
CTCCGCACTGAAACCAGGTGCATTATTTTCAGATGCTTGTGTGACACAAA
TCATAATGTATAGGTTGACAATATTAAACAAAAAGACCCTACCTTCTTGG
ATTGTCATTTCAATCAACAAAGTATGCCCTGCAGAGGGTGTTGAATGCTT
GCTTGTAATTTATTATTTATTAGGGTTTTAATTATACAAGCCGCTGTTGT
TTACAATGGTGGCCAAAAATCTCCTGCGCAGTATAAAACAAAAACTATAC
TATGTACAATAAAGGGTTAGAAAAAATATTTCAATCATATGAATATTGTG
GTATTATGTGTAGTTAATAATCAAGTTTCATGATGGCCTTGTTGCCGACT
TTGTCACCAGGGGTGCGTGGGAGCGCAACAAAGATTGTCTTTTCAATATC
CGCATTTTACGTGTTGGCAGTCCCGTTGATAGCGTTATTGTGGTGGTCGT
GATTCCCTGCAGCAATTTATATGGCAGTGTTCTATAACAGCAAGACTTGA
ATTAACATCAATGATTGCAAGGTTGTAGCGCAGAGAAGTGGCGGGCTCCC
TTTTTCATCTCATCATTGTTGACAGAGTTGCTCATGCCTCCTTCCAGGTC
TTCTTGAGGTGTGTGCTTGCGCAGCTCTCGGCCAAGTGGCAGCACCCTCT
ATCCTCCGTGTGTGACTGACTGCACGGGCGGGCACAAATTTCTCTGATCA
GGACTGTGGATGTACATCTTGGGGGCTCCAGGCTGTAGTGGTCGATTTCT
AGTTTTGTTTGAGGATGGCGCTGGCTCATCTTTCCTCAGGCTGCAGTAGT
GGAAGCATTAGGCGGTGAATTTTAGTGGTGGGCGTGGGTTGCTTATAATA
TATTTTTCTGGGTCTCTTGAACAGCTTATAGTAGTTAGTGTAGTGTGTAT
AGAGGTATCTCATATCTGTCATTTGATATGTTTGCTGCTGTTCCTCCTGC
TGGCACAGATTTGCTATTTGATGGATATAAGATTTTATGAGTGAAGGAGA
TGATAGTAAAACAGTACTTAAAGGGCCCTCAAGCACCCCCCTCAAATAAA
ATAAAAACAAACTTTTTGATTCACCATATACTAGGGTCCTTACTGCACTG
CACATCATCCGTATTGTCATTTATGCATTATCCAGATTCATACCCACCAG
CAAGGCTGTACATGCATATGTGCAGTATGGCCGAGCAGCACATGTGAACA
CACACACAATAGCATTATATACTACACTAGCAGAAGCTGTACTTTGGTGC
TTTACCCTGATGAGTGAGCTCCCAGAAAATAATAGGCGTGGACATAGATG
GAGTCGCTCTTGGGTTGAAAGACCAATGCCAATTTTTTGTTGAAGGAAAT
TTTAGACAAATTCCAGGAAAAATGTCTATTTTGGGGTCAGGTCAATTTTC
GGGATACATGACGCCTGGTTTTTGATCTTCCAGACAACTGAGCCCAAATT
GAACCATCACACTAGTTGACAGAGAGGGTCATTCTGCATCGAACTGTACC
CTAGGGGTGGTCAGGAAAGATGTCCGCCAGAAGATATGAAGTCACCTTTT
ACATCCCTATCCTATGATGTGTGGATTTATTACCCATGCTGTTGATGATG
ATGATGGTGTTAGATTTAGTTTACTGCAGTCTAGCCTTTCAAAACACTTT
CAGGAAACCAGCTGAAGCTAGCACACCCCTAGTTTCTATAATCCACCTAG
GGATATTTTGGTCGTGGTTCTGCCCACGGATCTTGGTCTCTGTCTCCTCG
TTTGTTTTTTACTTCCACATGCTGATATATAATTGGTCGTGGTACGATAT
CCATTTGCGGATACACGAGCACTTTTGTAACTTCCGCTGGCGAATATTTG
TTTGGACGATTTGGAAAAAAAAAAAAAAACGCGAGAGAACTACAGTGTTA
ATTCGACTTTAAGAATACACGACTTTAAGAATATTAAGTTAAAATTTTGA
AAAATTGTTAAGAATATTCTAAGTTACTTTGAAAGTGTATTATTCTTATA
TACTTACTAAGTACGAGAGGTTGCTCCCATATTTCAGATGAAGGTTGTTC
TTCAATGATGGCATGATGTCAGAAGGAGTGGCCAAGATAAGCTGTTCAGT
ATTTTTGGCTGGTAATTCAGGGTGCTGGGCTTTGATACGAAGACTATAAG
AGGATCTAGCTTTGTGCACTTGAAATTCGCAGTGAGGGCAATTGTGTTTT
CTTTTCGGAGAAGCTTTATCAGTAGTTGTTGTTATTATCGTTACTATCTC
CCCGTTCTTGTTTGTTGCCGTTTTCTTGAAAAATGGTCGATATAAGCTTG
GTGAGAGGGGGTTGCTCATTTCATACTCGATTTCGAGACTGAATCCTGAG
AACGTTCGAGTCGAATGAAAACATTGTAAACTCGGTAGTGGCAGCAGGCA
GCACTGATGCTGCTGCTGCTGCTGCTGCGTTTTTTCGTTGTCGTTGTTGC
GATCGTTTTGTGGTTTTTTCTACTGCTTTTTATCCTTCTTGTTGTGGTTG
TGGCACTTCTTCTGCTTCTTCTTCTTCACTTCCTCTTCTACTTCTTCTCC
ACCTCGAAAATACTTAAGAATAATCGAAGGTAAGGCTCGCGACCGCTAAG
AATATTTTAACTTACCGCGAAAATGACCGAATCTTAAAGTCGAACGAACA
CTGTAGCAATACTCGCAGGCGAAAGCAAAATCGGCCGATGGGCAGCTCAT
TTATCAGGGGAGAGCACCATATAGCTGCCTTTTCTCCCTACTGGCACAAA
TGCATGTTTTGTTTTTGCATTTGTGTTGTTGCATTCGGCAGGGCACCCAT
GCCCATCACCAAAGAGGTCCAAGCGTCCCTGGGAGGCCATGATGGGTAGC
AACGATGCCGGCAGCCGCCCAGCAGCAGCCGCCCCTCCTCTGGCTCGCAG
CGACGATGGCAACGGGGGTCCTGTCCGCCGCTCTGCCGAGGCAACAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1251:138740..142236-

>mRNA_H-akashiwo_Contig1251.15.1 ID=mRNA_H-akashiwo_Contig1251.15.1|Name=mRNA_H-akashiwo_Contig1251.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=552bp|location=Sequence derived from alignment at H-akashiwo_Contig1251:138740..142236- (Heterosigma akashiwo CCMP452)
ACGACAGAGAATTGGCCCAAGAAGGCCAACTATATAAGTACCCACAATCA
TTGTAATACCACATCTGGGTTTGATTGCATCCGAACAATGCGCGAAAACT
GTGCAGGAAATGATATCAAAGTGGGAGGATCTCGTTCTTCCAGTCGTCTA
AAAATGGGCACTTTCAGAGAAAGCCTGTTGCTCCATGGTTCTCACTGGAA
AATGGTGCTCCAAATTCAAGATGGCGTCTCATTGAGTGCCACCCAAAAAT
GGTGGCATGAAAATCATACTTGTATGCGAAACAGAAGTAGGACAGGCTCT
GGTGATATCCTGGCTGGCCTTGGTCATTTGCCACTTTTGAAGGCTGATAG
TATGAGAGCAACAGCTCTCAATCATTTCCCCTCCGCACTGAAACCAGGGC
ACCCATGCCCATCACCAAAGAGGTCCAAGCGTCCCTGGGAGGCCATGATG
GGTAGCAACGATGCCGGCAGCCGCCCAGCAGCAGCCGCCCCTCCTCTGGC
TCGCAGCGACGATGGCAACGGGGGTCCTGTCCGCCGCTCTGCCGAGGCAA
CA
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