mRNA_H-akashiwo_Contig1250.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1250.4.1
Unique NamemRNA_H-akashiwo_Contig1250.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 8.300e-51
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 3 
Query:   93 TVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            +VEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDE+T EEIIRTSKR IEMLFVRGDVVILVSPPLRTT
Sbjct:   20 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 109
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.340e-50
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 3 
Query:   93 TVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            +VEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQE+DE+T EEIIRTSKR IEMLFVRGDVVILVSPPLRTT
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 102
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 5.810e-50
Identity = 81/92 (88.04%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   87 STTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            S++VEEPLDLIRLSLDERI+VKCRG+RELRGKLH+YDQHLNMVLGDVEETVTT E+DE+TYEEI+RTSKR+IEMLFVRGDVVILVSPP+RTT
Sbjct:    2 SSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 161 bits (407), Expect = 1.120e-47
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 3 
Query:   81 MASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRT 359
            MAST V+EP+DL+RLSLDERI+VK RGDRELRGKLHAYDQHLNMVLGDVEE VTT E+DEETYEEII+TSKR IEMLFVRGD VIL+SPPLRT
Sbjct:    1 MASTLVKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.770e-46
Identity = 77/92 (83.70%), Postives = 88/92 (95.65%), Query Frame = 3 
Query:   87 STTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            S++V+EPLDLIRLSL+ERIYVKCRG+RELRGKLHA+D+HLNM+LG+VEETVTT EIDEET EEIIRTS+R +EMLFVRGDVVILVSPPLRT 
Sbjct:    2 SSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRTA 93
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.750e-46
Identity = 74/90 (82.22%), Postives = 88/90 (97.78%), Query Frame = 3 
Query:   93 TVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            +++ PLDLIRLS+DERI+VKC+GDRELRGKLHA+DQHLNMVLG+VEE+VTT+EIDEET EEI++TSKRNIEMLFVRGD+VILVSPPLRT+
Sbjct:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTS 91
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: UPI0001CBB8D0 (U6 snRNA-associated Sm-like protein LSm3-like n=2 Tax=Deuterostomia TaxID=33511 RepID=UPI0001CBB8D0)

HSP 1 Score: 157 bits (397), Expect = 4.840e-46
Identity = 80/98 (81.63%), Postives = 86/98 (87.76%), Query Frame = 3 
Query:   69 DCSAMASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            D   + S TVEEPLDLIRLSLDERIYVK R DRELRG+LHAYDQHLNM+LGDVEETVTT EIDEETYEEI +++KRNI MLFVRGD VILVSPPLR T
Sbjct:    4 DQDQVPSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVILVSPPLRGT 101
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A8J5XN36_DIALT (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XN36_DIALT)

HSP 1 Score: 156 bits (395), Expect = 7.840e-46
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 3 
Query:   84 ASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            AS  VEEPLDLIRLSLDER+YVK R +RELRG+LHAYDQHLNMVLGDV+ETVTT++ID ETYEEII+TSKR+IEMLFVRGD VILVSPPLRT 
Sbjct:    4 ASQVVEEPLDLIRLSLDERVYVKLRNERELRGRLHAYDQHLNMVLGDVDETVTTRDIDTETYEEIIKTSKRSIEMLFVRGDGVILVSPPLRTA 96
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A7I8J1D9_SPIIN (U6 snRNA-associated Sm-like protein LSm3 n=8 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7I8J1D9_SPIIN)

HSP 1 Score: 155 bits (392), Expect = 2.300e-45
Identity = 76/91 (83.52%), Postives = 84/91 (92.31%), Query Frame = 3 
Query:   90 TTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            +TV+EPLDLIRLSLDERIYVK R DRELRGKLHAYDQHLNM+LGDVEET+TT EID+ETYEEI+RT+KRN+  LFVRGD VILVSPPLRT 
Sbjct:    7 STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRNMPFLFVRGDGVILVSPPLRTA 97
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: T1JAU3_STRMM (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JAU3_STRMM)

HSP 1 Score: 155 bits (392), Expect = 2.770e-45
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 3 
Query:   84 ASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 362
            +S TVEEPLDLIRLSLDERIYVK R +RELRG+LHAYDQHLNM+LGDVEETVTT EIDEETYEE+ +T+KRNI MLFVRGD VILVSPP+R++
Sbjct:   10 SSNTVEEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEVYKTTKRNIPMLFVRGDGVILVSPPMRSS 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FJT0_9STRA8.300e-5195.56U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A7S2GP21_9STRA1.340e-5094.44U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
D7FXS6_ECTSI5.810e-5088.04U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A0M0JVC1_9EUKA1.120e-4786.02U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]
A0A4D9CUN8_9STRA1.770e-4683.70U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
A0A7S3M171_9STRA4.750e-4682.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
UPI0001CBB8D04.840e-4681.63U6 snRNA-associated Sm-like protein LSm3-like n=2 ... [more]
A0A8J5XN36_DIALT7.840e-4683.87U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A7I8J1D9_SPIIN2.300e-4583.52U6 snRNA-associated Sm-like protein LSm3 n=8 Tax=M... [more]
T1JAU3_STRMM2.770e-4581.72U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1250contigH-akashiwo_Contig1250:65672..66615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXS6
Preferred nameLSM3
PFAMsLSM
Model size683
Max annot lvl2759|Eukaryota
KEGG koko:K12622
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000781,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005694,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030629,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034470,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070034,GO:0070925,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098687,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
Exons3
Evalue3.89e-52
EggNOG OGsKOG3460@1|root,KOG3460@2759|Eukaryota
Descriptioncytoplasmic mRNA processing body assembly
Cds size285
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.3053432-UTR-H-akashiwo_Contig1250:65671..657511681387133.3053432-UTR-H-akashiwo_Contig1250:65671..65751Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1250 65672..65751 +
1681387133.3431196-UTR-H-akashiwo_Contig1250:66297..666151681387133.3431196-UTR-H-akashiwo_Contig1250:66297..66615Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1250 66298..66615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.3152707-CDS-H-akashiwo_Contig1250:65751..658591681387133.3152707-CDS-H-akashiwo_Contig1250:65751..65859Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 65752..65859 +
1681387133.3232837-CDS-H-akashiwo_Contig1250:65966..660621681387133.3232837-CDS-H-akashiwo_Contig1250:65966..66062Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 65967..66062 +
1681387133.3330343-CDS-H-akashiwo_Contig1250:66216..662971681387133.3330343-CDS-H-akashiwo_Contig1250:66216..66297Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 66217..66297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1250.4.1prot_H-akashiwo_Contig1250.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1250 65752..66297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1250.4.1

>prot_H-akashiwo_Contig1250.4.1 ID=prot_H-akashiwo_Contig1250.4.1|Name=mRNA_H-akashiwo_Contig1250.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=95bp
MASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVE
ETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT*
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mRNA from alignment at H-akashiwo_Contig1250:65672..66615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1250.4.1 ID=mRNA_H-akashiwo_Contig1250.4.1|Name=mRNA_H-akashiwo_Contig1250.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=944bp|location=Sequence derived from alignment at H-akashiwo_Contig1250:65672..66615+ (Heterosigma akashiwo CCMP452)
GTAGTCACATTCACATTCACAATTCTCCTCCCAAATTTCAACTGAAAAGA
AGGTGAGAATCGAGGTAAGATTGTTCAGCCATGGCTTCTACAACAGTCGA
GGAGCCATTGGATTTGATAAGATTGAGCTTAGATGAAAGAATCTATGTGA
AATGCAGGGGAGATAGAGAGCTTCGGGGAAAGTTGCACGTGAGTGTTTTT
TGTTTTTGTTGCTTTGTTTTCTTCATGATGATCGTGCATTCATACTTTAA
ATGCTAAGAACGTTTCGTACCAAACTTCAATGCTTTGTTTTCCAGGCGTA
CGATCAACATTTAAACATGGTTCTGGGTGACGTGGAAGAAACAGTTACAA
CACAAGAGATCGATGAGGAAACTTATGAAGAAATTATTAGGGTGACCCCC
CCCTATTCCCTGATAGTATTTTTGAGTGATGTGAGTGATATCTGTATTTG
AAACTTCAATCGTCAAGGTTGGAACTGTACCTAAAAACTTATACTTTTTC
CTCCATTAATATATTATATCTATCTATCTGGTATTTTTCTTGCAGACATC
AAAAAGAAATATTGAAATGCTGTTTGTGCGAGGTGATGTGGTGATTTTGG
TGTCGCCTCCATTGAGAACAACATAGCAGTGATAATGAGGTAGGGGTGGC
GAGGAGGTGCTGCAGATTGGACAACCGCTTCTGCACGATAGTAGCTCTTA
TCAACGCATAGTTGTTATTTGTGCACAGTGCCGTTTGACCACACCTGGTG
TTTGTGACACTTTACTATAAAACCTAAACCTAATATATGGCACAGCTCAA
ACGTTGCCAATAAGCGTATTTGTGGACGGCAGGACACCGGCATTTTTTTT
CAAACCTTAGTATAGTAGAATCATACACCAAGAGACTCTCATCTACATTT
AAATATTTACATTTATAATTTAACCCTAGATGCACCATAAAAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1250:65672..66615+

>mRNA_H-akashiwo_Contig1250.4.1 ID=mRNA_H-akashiwo_Contig1250.4.1|Name=mRNA_H-akashiwo_Contig1250.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=285bp|location=Sequence derived from alignment at H-akashiwo_Contig1250:65672..66615+ (Heterosigma akashiwo CCMP452)
ATGGCTTCTACAACAGTCGAGGAGCCATTGGATTTGATAAGATTGAGCTT
AGATGAAAGAATCTATGTGAAATGCAGGGGAGATAGAGAGCTTCGGGGAA
AGTTGCACGCGTACGATCAACATTTAAACATGGTTCTGGGTGACGTGGAA
GAAACAGTTACAACACAAGAGATCGATGAGGAAACTTATGAAGAAATTAT
TAGGACATCAAAAAGAAATATTGAAATGCTGTTTGTGCGAGGTGATGTGG
TGATTTTGGTGTCGCCTCCATTGAGAACAACATAG
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