prot_H-akashiwo_Contig1250.4.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-akashiwo_Contig1250.4.1
Unique Name	prot_H-akashiwo_Contig1250.4.1
Type	polypeptide
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length	95

Homology

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BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 3.340e-52
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0

Query:    5 TVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 94
            +VEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDE+T EEIIRTSKR IEMLFVRGDVVILVSPPLRTT
Sbjct:   20 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 109

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BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 167 bits (422), Expect = 5.410e-52
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 0

Query:    5 TVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 94
            +VEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQE+DE+T EEIIRTSKR IEMLFVRGDVVILVSPPLRTT
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 102

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BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.370e-51
Identity = 81/92 (88.04%), Postives = 91/92 (98.91%), Query Frame = 0

Query:    3 STTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 94
            S++VEEPLDLIRLSLDERI+VKCRG+RELRGKLH+YDQHLNMVLGDVEETVTT E+DE+TYEEI+RTSKR+IEMLFVRGDVVILVSPP+RTT
Sbjct:    2 SSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93

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BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 159 bits (403), Expect = 3.350e-49
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 0

Query:    1 MASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRT 93
            MAST V+EP+DL+RLSLDERI+VK RGDRELRGKLHAYDQHLNMVLGDVEE VTT E+DEETYEEII+TSKR IEMLFVRGD VIL+SPPLRT
Sbjct:    1 MASTLVKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93

[Close]

BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 156 bits (394), Expect = 7.660e-48
Identity = 77/91 (84.62%), Postives = 88/91 (96.70%), Query Frame = 0

Query:    3 STTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRT 93
            S++V+EPLDLIRLSL+ERIYVKCRG+RELRGKLHA+D+HLNM+LG+VEETVTT EIDEET EEIIRTS+R +EMLFVRGDVVILVSPPLRT
Sbjct:    2 SSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRT 92

[Close]

BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.070e-47
Identity = 74/90 (82.22%), Postives = 88/90 (97.78%), Query Frame = 0

Query:    5 TVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 94
            +++ PLDLIRLS+DERI+VKC+GDRELRGKLHA+DQHLNMVLG+VEE+VTT+EIDEET EEI++TSKRNIEMLFVRGD+VILVSPPLRT+
Sbjct:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTS 91

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BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A8J5XN36_DIALT (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XN36_DIALT)

HSP 1 Score: 154 bits (390), Expect = 3.420e-47
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = 0

Query:    2 ASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRT 93
            AS  VEEPLDLIRLSLDER+YVK R +RELRG+LHAYDQHLNMVLGDV+ETVTT++ID ETYEEII+TSKR+IEMLFVRGD VILVSPPLRT
Sbjct:    4 ASQVVEEPLDLIRLSLDERVYVKLRNERELRGRLHAYDQHLNMVLGDVDETVTTRDIDTETYEEIIKTSKRSIEMLFVRGDGVILVSPPLRT 95

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BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: UPI0001CBB8D0 (U6 snRNA-associated Sm-like protein LSm3-like n=2 Tax=Deuterostomia TaxID=33511 RepID=UPI0001CBB8D0)

HSP 1 Score: 154 bits (390), Expect = 4.240e-47
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0

Query:    3 STTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT 94
            S TVEEPLDLIRLSLDERIYVK R DRELRG+LHAYDQHLNM+LGDVEETVTT EIDEETYEEI +++KRNI MLFVRGD VILVSPPLR T
Sbjct:   10 SNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVILVSPPLRGT 101

[Close]

BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A7I8J1D9_SPIIN (U6 snRNA-associated Sm-like protein LSm3 n=8 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7I8J1D9_SPIIN)

HSP 1 Score: 153 bits (387), Expect = 1.010e-46
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 0

Query:    4 TTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRT 93
            +TV+EPLDLIRLSLDERIYVK R DRELRGKLHAYDQHLNM+LGDVEET+TT EID+ETYEEI+RT+KRN+  LFVRGD VILVSPPLRT
Sbjct:    7 STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRNMPFLFVRGDGVILVSPPLRT 96

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BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Match: A0A553QV50_9TELE (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QV50_9TELE)

HSP 1 Score: 153 bits (387), Expect = 1.180e-46
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0

Query:    2 ASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLR 92
            AS TVEEPLDLIRLSLDERIYVK R DRELRG+LHAYDQHLNM+LGDVEETVTT EIDEETYEEI +++KRNI MLFVRGD V+LV+PPLR
Sbjct:   10 ASNTVEEPLDLIRLSLDERIYVKMRSDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig1250.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S2FJT0_9STRA	3.340e-52	95.56	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F...	[more]
A0A7S2GP21_9STRA	5.410e-52	94.44	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D...	[more]
D7FXS6_ECTSI	2.370e-51	88.04	U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E...	[more]
A0A0M0JVC1_9EUKA	3.350e-49	86.02	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C...	[more]
A0A4D9CUN8_9STRA	7.660e-48	84.62	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N...	[more]
A0A7S3M171_9STRA	2.070e-47	82.22	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S...	[more]
A0A8J5XN36_DIALT	3.420e-47	84.78	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D...	[more]
UPI0001CBB8D0	4.240e-47	85.87	U6 snRNA-associated Sm-like protein LSm3-like n=2 ...	[more]
A0A7I8J1D9_SPIIN	1.010e-46	84.44	U6 snRNA-associated Sm-like protein LSm3 n=8 Tax=M...	[more]
A0A553QV50_9TELE	1.180e-46	84.62	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 11..89 e-value: 9.2E-22 score: 88.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 13..89 e-value: 1.8E-20 score: 72.3
None	No IPR available	GENE3D	2.30.30.100		coord: 2..91 e-value: 2.2E-29 score: 103.1
None	No IPR available	PANTHER	PTHR13110:SF8	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 3..93
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 3..93
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 8..89 e-value: 5.22726E-54 score: 160.469
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 8..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig1250	contig	H-akashiwo_Contig1250:65752..66297 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig1250.4.1	mRNA_H-akashiwo_Contig1250.4.1	Heterosigma akashiwo CCMP452	mRNA	H-akashiwo_Contig1250 65672..66615 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-akashiwo_Contig1250.4.1 ID=prot_H-akashiwo_Contig1250.4.1|Name=mRNA_H-akashiwo_Contig1250.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=95bp
MASTTVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVE
ETVTTQEIDEETYEEIIRTSKRNIEMLFVRGDVVILVSPPLRTT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR040002	Sm-like_LSM3
IPR034105	Lsm3
IPR010920	LSM_dom_sf