mRNA_H-akashiwo_Contig125.36.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A7S4RMR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RMR6_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.130e-41 Identity = 73/167 (43.71%), Postives = 96/167 (57.49%), Query Frame = 3
Query: 123 EWRPVIHRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCPICAVCPCCTLPEYITKATEESTYVYVRENSVEFNMPGLSSEKGACCGNSICGYRVADNVQVVYYDAMVMDQITDKTRCCNDCRTMCCGGHGQLLQLSSPFCAGCCYRSMFPLPCVPVCCTPCCGMCM 623
E R ++ R + I I + PG R C C+AP CP+ PCC PEYI S YVYVRENS+E+N P + +KG CCG+S V DNV V+Y+D + D + D TR CN+C+T CCGG G+ +Q+ S FC G C R P+ C+P CC C C+
Sbjct: 11 EDRRMLSRVIGDRIRITHTIEPGQRVTGCLICCHAPDKCPLLGCFPCCDYPEYIVNEMNSSKYVYVRENSLEWNNPTMQLDKGNCCGSSCTELTVLDNVTVLYFDDVYFDNVRDDTRRCNNCKTFCCGGRGEQVQIESTFCCGLCLRGRTPMTCIPSCCPEACCPCI 177
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A7S4W254_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W254_9STRA) HSP 1 Score: 149 bits (375), Expect = 4.960e-41 Identity = 71/161 (44.10%), Postives = 92/161 (57.14%), Query Frame = 3
Query: 141 HRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCPICAVCPCCTLPEYITKATEESTYVYVRENSVEFNMPGLSSEKGACCGNSICGYRVADNVQVVYYDAMVMDQITDKTRCCNDCRTMCCGGHGQLLQLSSPFCAGCCYRSMFPLPCVPVCCTPCCGMCM 623
H A + I + PG R C C+AP CP+ PCC PEYI S YVYVRENS+E+N P + +KG CCG+S V DNV V+Y+D + D + D TR CN+C+T CCGG G+ +Q+ S FC G C R P+ C+P CC C C+
Sbjct: 32 HFAAYTTVRITHTIEPGQRVTGCLICCHAPDKCPLLGCFPCCDYPEYIVNEMNSSKYVYVRENSLEWNNPTMQLDKGNCCGSSCTELTVLDNVTVLYFDDVYFDNVRDDTRRCNNCKTFCCGGRGEQVQIESTFCCGLCLRGRTPMTCIPSCCPEACCPCI 192
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A7R9U5P5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5P5_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.300e-36 Identity = 76/189 (40.21%), Postives = 112/189 (59.26%), Query Frame = 3
Query: 42 FVYGVNKSRLL*S*TRQAKIDIMANP--KEWRPVIHRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCPICAVCPCCTLPEYITKATEESTYVYVRENSVEFNMP-GLSSEKGACCGNSICGYRVADNVQVVYYDAMVMDQITDKTRCCNDCRTMCCGGHGQLLQLSSPFCAGCCYRSMFPLPCVPVCC 599
F+ K RLL R A + MA+ + R ++++ ++I +V+E+ PG + C+ +C C V PCC +PE I +S Y+YV+E S+E+N P + E G CG C YRV D+V V+YYD ++++ITD+TRCCNDCRT C GG G +QL + FC GCC +++ P PC+P C
Sbjct: 31 FLLNAQKLRLL----RAAPLVKMASKSYRMERVMMNKAEQHSIRVVEELQPGEHEVGNCQCFSCVPLCACCLVLPCCVIPESIAGQLRDSRYIYVKETSIEWNDPRAVCLEGGFLCGIDPCNYRVQDDVTVLYYDDPLLNEITDQTRCCNDCRTSCFGGEGDEIQLRNTFCFGCCAKALPPCPCIPSFC 215
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A6U3UST1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UST1_9STRA) HSP 1 Score: 129 bits (324), Expect = 6.260e-33 Identity = 79/209 (37.80%), Postives = 108/209 (51.67%), Query Frame = 3
Query: 123 EWRPVIHRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCP--ICAVCPCCTLPEYITKATEESTYVYVRENSVEFNMPGLSSEKGA-------CCGNSICGYRVADNVQVVYYDAMVMDQITDKTRCCNDCRTMCCGGHGQLLQLSSPFCAGCCYRSM-----------FPLPCVPVCCTPCCGMCMMDKFLWVDNAMEAGAAIKQQRD 689
E RP+I R + + + I+ + PG + C YAP P I + PC PEYI + S Y+Y+RENS+E N P + + CCG+S V D V V+YYD ++MD+I + TR CN +T CCGG G+ ++L S FC G CYR PL C+PV C C C K L+V+NA A I++ RD
Sbjct: 17 EDRPMISRSSGDRVKILHLIQPGKEETGCLTCFYAPPSFPAIISHLLPCIDYPEYILREVHSSQYIYIRENSIEVNQPTIQPARSESVLGNVLCCGHSSTDLIVLDQVTVIYYDDLIMDEIRNDTRVCNPLQTFCCGGKGEEVRLESTFCGGLCYRGRRGTRGCFGCCCMPL-CIPVGCPECLCPCAARKTLFVENADAAVDIIQKARD 224
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A7S0GFA2_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GFA2_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.650e-30 Identity = 70/189 (37.04%), Postives = 99/189 (52.38%), Query Frame = 3
Query: 123 EWRPVIHRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCPICAVCPCCTLPEYITKATEESTYVYVRENSVEFNMPGLSSEKGACCGNSICGYRVADNVQVVYYDAMVMDQITDKTRCCNDCRTMCCGGHGQLLQLSSPFCAGCCYRSMFPLPCVPVCCTPCCGMCMMDKFLWVDNAMEAGAAIKQQRD 689
E R +I R + + I I + PG R C AP+ P C + PCC P I K S Y+Y+RENS+E+N P + K NS C V D+V+ VY+D D++ RCC++ RT CCGG+G+ +Q+ S C R+ +P C+P C CC M + L V +A EA I++ RD
Sbjct: 23 EDRRMISRVSGDRIRITNTIEPGKRSASCFACVSAPSSFPCCGILPCCDYPRIIVKDLNASRYIYIRENSLEWNSPSMQRAK-----NSWCRLVVRDHVRTVYFDDEYFDEVYHDARCCSNLRTACCGGNGEQIQIDSRLYCNLCVRT-YPCCCIPACFPKCCFPWMNREELTVAHAPEAATIIREARD 205
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A7R9YB04_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB04_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.380e-24 Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 3
Query: 42 FVYGVNKSRLL*S*TRQAKIDIMANP--KEWRPVIHRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCPICAVCPCCTLPEYITKATEESTYVYVRENSVEFNMP-GLSSEKGACCGNSICGYRVADNVQVVYYDAMVMDQITDKTRCCNDCRTMCCG 506
F+ K RLL R A + MA+ + R ++++ ++I +V+E+ PG + C+ +C C V PCC +PE I +S Y+YV+E S+E+N P + E G CG C YRV D+V V+YYD ++++ITD+TRCCNDCRT C G
Sbjct: 31 FLLNAQKLRLL----RAAPLVKMASKSYRMERVMMNKAEQHSIRVVEELQPGEHEVGNCQCFSCVPLCACCLVLPCCVIPESIAGQLRDSRYIYVKETSIEWNDPRAVCLEGGFLCGIDPCNYRVQDDVTVLYYDDPLLNEITDQTRCCNDCRTSCFG 184
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A7S1Z353_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z353_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.960e-19 Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 3
Query: 405 VADNVQVVYYDAMVMDQITDKTRCCNDCRTMCCGGHGQLLQLSSPFCAGCCYRSMFPLPCVPVCCTPCCGMCMMDKFLWVDNAMEAGAAIKQQRD 689
V DNV V+Y+D + D + D TR CN+C+T CCGG G+ +Q+ S FC G C R P+ C+P CC C C+ LWV++A A I+ ++
Sbjct: 8 VLDNVTVLYFDDVYFDNVRDDTRRCNNCKTFCCGGRGEQVQIESTFCCGLCLRGRTPMTCIPSCCPEACCPCIAKSELWVEDADAAVRIIQNAQN 102
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A7S1Z2K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z2K2_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 5.400e-14 Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 3
Query: 123 EWRPVIHRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCPICAVCPCCTLPEYITKATEESTYVYVRENSVEFNMPGLSSEKGACCGNS 389
E R ++ R + I I + PG R C C+AP CP+ PCC PEYI S YVYVRENS+E+N P + +KG CCG+S
Sbjct: 10 EDRRMLSRVIGDRIRITHTIEPGQRVTGCLICCHAPDKCPLLGCFPCCDYPEYIVNEMNSSKYVYVRENSLEWNNPTMQLDKGNCCGSS 98
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A6V2H9P3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2H9P3_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.240e-12 Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 3
Query: 456 ITDKTRCCNDCRTMCCGGHGQLLQLSSPFCAGCCYRSMFPLPCVPVCCTPCCGMCMMDKFLWVDNAMEAGAAIKQQRD 689
+ D TR CN+C+T CCGG G+ +Q+ S FC G C R P+ C+P CC C C+ LWV++A A I+ ++
Sbjct: 77 VRDDTRRCNNCKTFCCGGRGEQVQIESTFCCGLCLRGRTPMTCIPSCCPEACCPCIAKSELWVEDADAAVRIIQNAQN 154
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Match: A0A482SHS9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHS9_9ARCH) HSP 1 Score: 66.2 bits (160), Expect = 4.250e-10 Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 3
Query: 129 RPVIHRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCPICAVCPCCTLPEYITKATEESTYVYVRENSVEFNMPGLSSEKGACCGNSICGYRVADNVQV 425
RP++ RQ ++IG+V ++P C C APA EYI + STY+++RENS+E+N P + + G CCG C Y V D+VQV
Sbjct: 25 RPIMSRQDRHSIGLVASLMPSQVTPGCLMCCSAPAXXXXXXXXXXXGDAEYIAAKRKASTYIFIRENSIEWNDPKIVMQTGVCCGVDPCMYDVQDHVQV 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig125.36.1 >prot_H-akashiwo_Contig125.36.1 ID=prot_H-akashiwo_Contig125.36.1|Name=mRNA_H-akashiwo_Contig125.36.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=208bp MANPKEWRPVIHRQAPNAIGIVKEVVPGVRQGPCCEVCYAPAMCPICAVCback to top mRNA from alignment at H-akashiwo_Contig125:1155573..1157268+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig125.36.1 ID=mRNA_H-akashiwo_Contig125.36.1|Name=mRNA_H-akashiwo_Contig125.36.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1696bp|location=Sequence derived from alignment at H-akashiwo_Contig125:1155573..1157268+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig125:1155573..1157268+ >mRNA_H-akashiwo_Contig125.36.1 ID=mRNA_H-akashiwo_Contig125.36.1|Name=mRNA_H-akashiwo_Contig125.36.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=624bp|location=Sequence derived from alignment at H-akashiwo_Contig125:1155573..1157268+ (Heterosigma akashiwo CCMP452)back to top |