mRNA_H-akashiwo_Contig10.111.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.111.1
Unique NamemRNA_H-akashiwo_Contig10.111.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.111.1 vs. uniprot
Match: A0A7S3YJI6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJI6_HETAK)

HSP 1 Score: 150 bits (378), Expect = 2.840e-44
Identity = 100/111 (90.09%), Postives = 101/111 (90.99%), Query Frame = 1 
Query:    1 MDSRDPTSNDVLDDNSGFQLFKSSXXXXXXXXSHAASASAVKTPQQEQKTVEEAEPDLKSEEDAILQEHGVDVAXXXXXPDHHEETKKAQAXDGPASTVDGGAASLESKKR 333
            MDSRDPTSNDVLDDNSGFQLFKSSXXXXXXXXSHAASASAVKTPQQEQKTVEEAEPDLKSEEDAILQEHGVDV XXXXXPDH         XDGPASTVDGGAASLESKK+
Sbjct:    1 MDSRDPTSNDVLDDNSGFQLFKSSXXXXXXXXSHAASASAVKTPQQEQKTVEEAEPDLKSEEDAILQEHGVDVXXXXXXPDHXXXXXXXXXXDGPASTVDGGAASLESKKK 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YJI6_HETAK2.840e-4490.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:5015638..5016406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons3
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.1102989-CDS-H-akashiwo_Contig10:5015637..50157151681387042.1102989-CDS-H-akashiwo_Contig10:5015637..5015715Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5015638..5015715 -
1681387042.1238256-CDS-H-akashiwo_Contig10:5015926..50160901681387042.1238256-CDS-H-akashiwo_Contig10:5015926..5016090Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5015927..5016090 -
1681387042.133848-CDS-H-akashiwo_Contig10:5016216..50164061681387042.133848-CDS-H-akashiwo_Contig10:5016216..5016406Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5016217..5016406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.111.1prot_H-akashiwo_Contig10.111.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 5015638..5016406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.111.1

>prot_H-akashiwo_Contig10.111.1 ID=prot_H-akashiwo_Contig10.111.1|Name=mRNA_H-akashiwo_Contig10.111.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=144bp
MDSRDPTSNDVLDDNSGFQLFKSSSKKKKKRLSHAASASAVKTPQQEQKT
VEEAEPDLKSEEDAILQEHGVDVAKEEDAPDHHEETKKAQAEDGPASTVD
GGAASLESKKRKRIEKLKEKKKNKKLAAKGKGNHALGKNPADG*
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mRNA from alignment at H-akashiwo_Contig10:5015638..5016406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.111.1 ID=mRNA_H-akashiwo_Contig10.111.1|Name=mRNA_H-akashiwo_Contig10.111.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=769bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5015638..5016406- (Heterosigma akashiwo CCMP452)
ATGGATTCGAGGGACCCTACATCAAATGATGTTTTGGATGACAACTCAGG
GTTCCAATTATTCAAGTCTTCTTCTAAGAAAAAGAAAAAACGGCTTTCCC
ATGCAGCATCTGCATCTGCTGTCAAAACGCCACAACAAGAACAAAAAACT
GTTGAGGAAGCTGAGCCTGACCTGAAGTCTGAAGAAGATGGTAACAATCT
ACTTGAATAATCAGCTATCAGTGAATCCCATACTCTTTCAGTGTTTTGAT
ATTCGGTCTGTCTGTCAAACTGTCTCAAAAGTCCAATTAACATGAAAAAA
ATGATGCACGCAGCAGCTATCTTACAGGAACACGGTGTGGATGTTGCAAA
AGAGGAGGATGCTCCTGATCATCATGAGGAGACGAAGAAAGCTCAAGCTG
AAGATGGGCCTGCTTCTACTGTGGATGGAGGAGCTGCATCACTGGAATCG
AAAAAAAGGAAAAGAATCGAAAAATTGAAGGTGTATGGTGCGGCAGTAGC
TTTTATGTGTGTTAAACATCCTTCTCTAACATCATCATCATCATCATTCT
TTTCAGTAGGAATCATGGTGGATTACAACACAAGAAGTAGTCCTGACTGT
AGTACCTACCTGTAGATTACAAAAACAAAATTCTAAGCACAACACCCCAA
ATTTCTGCTGTTGTATATTATATACATATATGTATATATAGGAAAAGAAG
AAAAACAAAAAGTTGGCGGCAAAAGGAAAAGGAAATCATGCATTAGGCAA
AAATCCTGCAGATGGGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:5015638..5016406-

>mRNA_H-akashiwo_Contig10.111.1 ID=mRNA_H-akashiwo_Contig10.111.1|Name=mRNA_H-akashiwo_Contig10.111.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=432bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5015638..5016406- (Heterosigma akashiwo CCMP452)
ATGGATTCGAGGGACCCTACATCAAATGATGTTTTGGATGACAACTCAGG
GTTCCAATTATTCAAGTCTTCTTCTAAGAAAAAGAAAAAACGGCTTTCCC
ATGCAGCATCTGCATCTGCTGTCAAAACGCCACAACAAGAACAAAAAACT
GTTGAGGAAGCTGAGCCTGACCTGAAGTCTGAAGAAGATGCTATCTTACA
GGAACACGGTGTGGATGTTGCAAAAGAGGAGGATGCTCCTGATCATCATG
AGGAGACGAAGAAAGCTCAAGCTGAAGATGGGCCTGCTTCTACTGTGGAT
GGAGGAGCTGCATCACTGGAATCGAAAAAAAGGAAAAGAATCGAAAAATT
GAAGGAAAAGAAGAAAAACAAAAAGTTGGCGGCAAAAGGAAAAGGAAATC
ATGCATTAGGCAAAAATCCTGCAGATGGGTGA
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