mRNA_H-akashiwo_Contig10.108.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.108.1
Unique NamemRNA_H-akashiwo_Contig10.108.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.108.1 vs. uniprot
Match: A0A7S3YGP2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGP2_HETAK)

HSP 1 Score: 223 bits (567), Expect = 2.410e-70
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 2 
Query:   29 MQFSIKFSFKDGTYIVIDRSSTQLKRFSEQLSLLGLLDQVNVPDPSIEDEQEVYDGLASYLLNILDVPDIVESETFRDFVTCDDEGGSSSHSGECTPTGLETPGKGQGRERTA 367
            MQFSIKFSFKDGTYIVIDRSSTQLKRFSEQLSLLGLLDQVNVPDPSIEDEQEVYDGLASYLLNILDVPDIVESETFRDFVTCDDEGGSSSHSGECTPTGLETPGKGQGRERTA
Sbjct:    1 MQFSIKFSFKDGTYIVIDRSSTQLKRFSEQLSLLGLLDQVNVPDPSIEDEQEVYDGLASYLLNILDVPDIVESETFRDFVTCDDEGGSSSHSGECTPTGLETPGKGQGRERTA 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YGP2_HETAK2.410e-70100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:4904385..4905271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size368
Hectar predicted targeting categoryother localisation
Exons2
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.0559084-UTR-H-akashiwo_Contig10:4904384..49044121681387042.0559084-UTR-H-akashiwo_Contig10:4904384..4904412Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 4904385..4904412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.0655565-CDS-H-akashiwo_Contig10:4904412..49044681681387042.0655565-CDS-H-akashiwo_Contig10:4904412..4904468Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 4904413..4904468 +
1681387042.0747302-CDS-H-akashiwo_Contig10:4904988..49052711681387042.0747302-CDS-H-akashiwo_Contig10:4904988..4905271Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 4904989..4905271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.108.1prot_H-akashiwo_Contig10.108.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 4904413..4905271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.108.1

>prot_H-akashiwo_Contig10.108.1 ID=prot_H-akashiwo_Contig10.108.1|Name=mRNA_H-akashiwo_Contig10.108.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=113bp
MQFSIKFSFKDGTYIVIDRSSTQLKRFSEQLSLLGLLDQVNVPDPSIEDE
QEVYDGLASYLLNILDVPDIVESETFRDFVTCDDEGGSSSHSGECTPTGL
ETPGKGQGRERTA
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mRNA from alignment at H-akashiwo_Contig10:4904385..4905271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.108.1 ID=mRNA_H-akashiwo_Contig10.108.1|Name=mRNA_H-akashiwo_Contig10.108.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=887bp|location=Sequence derived from alignment at H-akashiwo_Contig10:4904385..4905271+ (Heterosigma akashiwo CCMP452)
TCAGTGATTGATACTTTGCACTGCAGGTATGCAGTTTTCAATTAAGTTTA
GTTTCAAGGATGGTACCTACATCGTCATCGATCGGTGAGTACAACTAAAC
TTCTAGCCTGGCCGAACAAAGACCAGTTGTCCTTCATATCCAGCACTCTT
CTTGGTGGAATACACCACCCGCATCCACAAGCTGCTATTAATGCGACTAT
TGGTTGTTGACATCTCGTAGAATAATACCAGCGCACACCCTCACCCACTA
TAATAACTATTCCTCCTACATGATTGATTATTATTCATACATGTCCAATA
TCCAGCACTCTTCTCGGTGAAATACACCACCCACGTTCACTAGCTACTAC
TTAATTTGGCTAGACTCAAGGCCATCTAGTAGAATAATCGCACATCCTCA
CCCACTATTCCTATTATGATTGAGTATTATTTATTTTTTCGAAGTATATT
TAGTTCTTATATAAAGTTATGTTGGATTATAAAAAGTGTCCTTATCAATC
AGTCGTCATTTATTATTTATTAATCAAATATCGTGTTGTATTGAATGTTA
AGCATGCTGTCCGAAACTTTTCTTGGTGATTTTTTCTTGGCCGTCGATAT
GTAGGTCTTCTACTCAGCTGAAAAGGTTTTCAGAGCAGCTTTCGCTTTTG
GGTTTACTTGACCAGGTGAATGTGCCAGACCCGTCTATTGAAGATGAACA
GGAAGTATACGATGGGTTGGCGTCCTACTTACTCAACATTTTGGACGTTC
CAGACATTGTGGAAAGTGAAACATTCCGAGACTTTGTCACCTGCGACGAC
GAGGGTGGTTCTTCTAGCCACAGCGGAGAGTGCACGCCTACTGGCCTGGA
AACCCCAGGGAAAGGGCAGGGCCGCGAGCGGACCGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:4904385..4905271+

>mRNA_H-akashiwo_Contig10.108.1 ID=mRNA_H-akashiwo_Contig10.108.1|Name=mRNA_H-akashiwo_Contig10.108.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=339bp|location=Sequence derived from alignment at H-akashiwo_Contig10:4904385..4905271+ (Heterosigma akashiwo CCMP452)
ATGCAGTTTTCAATTAAGTTTAGTTTCAAGGATGGTACCTACATCGTCAT
CGATCGGTCTTCTACTCAGCTGAAAAGGTTTTCAGAGCAGCTTTCGCTTT
TGGGTTTACTTGACCAGGTGAATGTGCCAGACCCGTCTATTGAAGATGAA
CAGGAAGTATACGATGGGTTGGCGTCCTACTTACTCAACATTTTGGACGT
TCCAGACATTGTGGAAAGTGAAACATTCCGAGACTTTGTCACCTGCGACG
ACGAGGGTGGTTCTTCTAGCCACAGCGGAGAGTGCACGCCTACTGGCCTG
GAAACCCCAGGGAAAGGGCAGGGCCGCGAGCGGACCGCC
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