mRNA_H-akashiwo_Contig1245.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1245.6.1
Unique NamemRNA_H-akashiwo_Contig1245.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: A0A6V1TST6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TST6_HETAK)

HSP 1 Score: 144 bits (363), Expect = 5.270e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 2 
Query:    5 CEKKSLNWERESTSIMLKAIHSIGQGLSGXXXXXXXXXXTLGGAYTERLVLSENALSYKTAIPETFKAAFVAPTATILGDVKVGAG 262
            CEKKSLNWERESTSIMLKAIHSIGQGLSGXXXXXXXXXXTLGGAYTERLVLSENALSYKTAIPETFKAAFVAPTATILGDVKVGAG
Sbjct:    1 CEKKSLNWERESTSIMLKAIHSIGQGLSGXXXXXXXXXXTLGGAYTERLVLSENALSYKTAIPETFKAAFVAPTATILGDVKVGAG 86
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: A0A2D4C5C0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5C0_PYTIN)

HSP 1 Score: 84.7 bits (208), Expect = 4.190e-17
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:  259 GSSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALAD 447
            GSSV +GAT+RGDVNFI +GE T I D+AVVHVA+I+QDIPT IG+ V+IG  A +HAC + D
Sbjct:   74 GSSVWYGATVRGDVNFITIGENTNIQDHAVVHVAKIHQDIPTKIGSNVTIGPSAIIHACTIND 136
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: A0A0N7L486_PLAHL (Gamma carbonic dehydratase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L486_PLAHL)

HSP 1 Score: 82.0 bits (201), Expect = 4.170e-16
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  259 GSSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALAD 447
            GSS+ + AT+RGDVN+I +GE T I D AVVHVA+IY+DIPT IGN V++G  A +HAC + D
Sbjct:   71 GSSIWYNATVRGDVNYITIGENTNIQDQAVVHVAKIYKDIPTKIGNNVTVGPAAILHACTIQD 133
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: A0A8K1CL43_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL43_PYTOL)

HSP 1 Score: 81.3 bits (199), Expect = 8.520e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:  259 GSSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALAD 447
            GSSV +GAT+RGDVN I +GE T I D+AVVHVA+I+QD+PT IG+ V++G  A +HAC + D
Sbjct:   74 GSSVWYGATVRGDVNHITIGENTNIQDHAVVHVAKIHQDLPTKIGSNVTVGPSAIIHACTIQD 136
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: A0A3R7HC37_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HC37_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.000e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  259 GSSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALAD 447
            GSS+ + AT+RGDVN+I +GE T I D AVVHVA+I++DIPT IGN V++G  A VHAC + D
Sbjct:   85 GSSIWYNATVRGDVNYITIGENTNIQDQAVVHVAKIHKDIPTKIGNNVTVGPAAIVHACTIQD 147
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: A0A1Z5KHZ6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHZ6_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 2.210e-15
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  259 GSSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALADG 450
            GSS+ +GATIRGDVN + +G+ T+IGD +VVHVA+I  D PT IG+GV+IG GA VHA  L DG
Sbjct:   76 GSSIWYGATIRGDVNEVTIGDRTSIGDRSVVHVAKIQGDFPTHIGSGVTIGPGALVHAATLKDG 139
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: H3GWK8_PHYRM (Uncharacterized protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=H3GWK8_PHYRM)

HSP 1 Score: 79.7 bits (195), Expect = 3.090e-15
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  259 GSSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALAD 447
            GSS+ + AT+RGDVN I +GE T I D AVVHVA+I++DIPT IGN V++G  A VHAC + D
Sbjct:   71 GSSIWYNATVRGDVNHITIGENTNIQDQAVVHVAKIHKDIPTKIGNNVTVGPAAIVHACTIQD 133
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: A0A448ZKR1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKR1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.410e-15
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:  262 SSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALAD 447
            SSV +GAT+RGDVN +++G  T+IGD AVVHVA+I  D PT+IG+ V+IGAGA VHAC + D
Sbjct:   78 SSVWYGATVRGDVNNVKIGTKTSIGDRAVVHVAKIQGDHPTVIGDNVTIGAGAIVHACTIED 139
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: A0A484E3A7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3A7_BRELC)

HSP 1 Score: 80.1 bits (196), Expect = 3.450e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  259 GSSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALAD 447
            GSS+ + AT+RGDVN+I +GE T I D AVVHVA+I +DIPT+IGN V++G  A VHAC + D
Sbjct:  103 GSSIWYNATVRGDVNYIIIGENTNIQDQAVVHVAKINKDIPTIIGNNVTVGPAAIVHACTIHD 165
[Close]
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Match: B7FY50_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FY50_PHATC)

HSP 1 Score: 76.3 bits (186), Expect = 1.630e-14
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  262 SSVGWGATIRGDVNFIQVGEGTAIGDNAVVHVARIYQDIPTLIGNGVSIGAGATVHACALAD 447
            SS+ +GAT+RGDVN I +G+ T IGD AVVHVARI  D  T IGN V+IGAGA +HA  L D
Sbjct:   28 SSIWYGATVRGDVNTITIGDYTNIGDRAVVHVARIQGDFATSIGNNVTIGAGALIHAATLKD 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1245.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1TST6_HETAK5.270e-40100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A2D4C5C0_PYTIN4.190e-1765.08Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0N7L486_PLAHL4.170e-1660.32Gamma carbonic dehydratase n=1 Tax=Plasmopara hals... [more]
A0A8K1CL43_PYTOL8.520e-1660.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7HC37_9STRA1.000e-1560.32Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A1Z5KHZ6_FISSO2.210e-1562.50Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
H3GWK8_PHYRM3.090e-1560.32Uncharacterized protein n=19 Tax=Peronosporaceae T... [more]
A0A448ZKR1_9STRA3.410e-1562.90Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A484E3A7_BRELC3.450e-1560.32Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
B7FY50_PHATC1.630e-1462.90Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1245contigH-akashiwo_Contig1245:156568..158169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCQ8
PFAMsHexapep
Model size450
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009853,GO:0009900,GO:0009901,GO:0009908,GO:0009987,GO:0010033,GO:0016020,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0019222,GO:0019866,GO:0022414,GO:0022607,GO:0030964,GO:0031090,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0042221,GO:0042802,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048609,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0061458,GO:0065003,GO:0065007,GO:0070206,GO:0070207,GO:0070469,GO:0071840,GO:0090567,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099402,GO:1902494,GO:1990204,GO:2000377
Exons5
Evalue6.15e-06
EggNOG OGsCOG0663@1|root,2QTES@2759|Eukaryota
Descriptioncarbonate dehydratase activity
Cds size252
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1245.6.1prot_H-akashiwo_Contig1245.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1245 156617..157170 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.784243-UTR-H-akashiwo_Contig1245:156567..1566161681387130.784243-UTR-H-akashiwo_Contig1245:156567..156616Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1245 156568..156616 +
1681387130.8271728-UTR-H-akashiwo_Contig1245:157170..1571811681387130.8271728-UTR-H-akashiwo_Contig1245:157170..157181Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1245 157171..157181 +
1681387130.8366437-UTR-H-akashiwo_Contig1245:157538..1576351681387130.8366437-UTR-H-akashiwo_Contig1245:157538..157635Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1245 157539..157635 +
1681387130.8463836-UTR-H-akashiwo_Contig1245:158128..1581691681387130.8463836-UTR-H-akashiwo_Contig1245:158128..158169Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1245 158129..158169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.7962627-CDS-H-akashiwo_Contig1245:156616..1567161681387130.7962627-CDS-H-akashiwo_Contig1245:156616..156716Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1245 156617..156716 +
1681387130.805626-CDS-H-akashiwo_Contig1245:156864..1569591681387130.805626-CDS-H-akashiwo_Contig1245:156864..156959Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1245 156865..156959 +
1681387130.817116-CDS-H-akashiwo_Contig1245:157113..1571701681387130.817116-CDS-H-akashiwo_Contig1245:157113..157170Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1245 157114..157170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1245.6.1

>prot_H-akashiwo_Contig1245.6.1 ID=prot_H-akashiwo_Contig1245.6.1|Name=mRNA_H-akashiwo_Contig1245.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=84bp
MLKAIHSIGQGLSGIGRQIDGLGRTLGGAYTERLVLSENALSYKTAIPET
FKAAFVAPTATILGDVKVGAGLAWVGEQPFVET*
back to top

mRNA from alignment at H-akashiwo_Contig1245:156568..158169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1245.6.1 ID=mRNA_H-akashiwo_Contig1245.6.1|Name=mRNA_H-akashiwo_Contig1245.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1602bp|location=Sequence derived from alignment at H-akashiwo_Contig1245:156568..158169+ (Heterosigma akashiwo CCMP452)
TTGTTGTGAAAAAAAAAGCTTGAATTGGGAAAGGGAAAGCACTTCAATCA
TGCTTAAAGCGATTCATTCCATAGGCCAGGGTCTGTCTGGCATTGGTCGC
CAAATTGATGGGTTGGGGAGGACTTTGGGAGGAGCCTACACGGAAAGATG
TAAGCGTTGTGTGTGTGTGTGTTTTTTTTCAGGGCAGAGCGTACTCTTGT
CTTGTAAACAACTGTTTTCTACCAAATCAAGCAACAACCCGACTTTTTAA
AAGGTAGGTCGAAATATTCTTTTTCATAAATTTATTTTTCCTGCCAGTGG
TGCTCTCAGAGAATGCGCTAAGCTACAAGACGGCGATTCCTGAAACATTT
AAAGCCGCTTTTGTGGCGCCAACGGCAACCATCCTTGGTGATGTGCGTGA
CCATTCAACAAAGAATGTTCGATATTATTATGATGAAAATTATGACAGTG
GGTTTTCCATGCATACGTACGGATAGAATGACCTTCACATCGTTTATGTT
CAGTGTTGTCGTTATCATTACCTCCTTGAATATGTATGGCTTCCAGGTCA
AAGTTGGTGCGGGTCTAGCGTGGGTTGGGGAGCAACCATTCGTGGAGACG
TAAACTTTATTCAAGTACGCACACTTTTcCCTAAAAAATATGAATAAAGT
TATTGTTTGTTGGGATGGTGaGTGGGAGTGTGAGAAGAAGAAGAAAAAAT
ATGATTCTGCAAAGCTGCTTTGTGAAAAGCTTACGAGTGTCATTCATATT
TCTGTTGCAAGTGTGTATTTTCTTCAACAAGCACAAGCGTTTAAGACAGC
CCCGTACCATTCAAGTAAAGTAATACAAAACATGTGTACATGCATTTAGG
TTGGGGAAGGAACCGCAATTGGGGACAATGCTGTGGTTGGAAACGGTCCA
GTTATTGGAAACGGTGTCAGCATAGGTGAGCCATAAACCATGCTTGCCCC
CTTTTCTTGAACTTCAATCAGGTTGGGGAGGGAACTGCTATTGGAGACAA
TGCTGTGGTGCATGTAGCACGCATTTACCAGGACATTCCTACATTGATTG
GAAATGGTGTCAGTATTGGTGAGCCATTCACACAGTGGGCCTTCCTCCCC
CCTTTAACTTAATTTGGGGAGCTTCAGATATACACAGGGATGTATTTGCA
ACCGTTGAACGCAAGTGCCTGCCGACAGCAGTGGTCATATGGACAGCTTT
TAGAAGTCGATGACTGAACAACGACGATGACCGGATTATGTACTCTTTTT
TCTTTCACTTGCGGGAATTTTTCATTTAGAAAAGAAACTGTTTAGGGGGG
TGAGATTGGGGGGGGCGACTCTTCCCAGCTGGAAACGCCTTAGCGCGACC
CAGGACAAACGATGAATGATCCATGCCTGGGCATGTGTTTTTTTGGCAGA
CGACCGCAACCCCGCGCGGGATGCCCGGGCGAAGAACCCCCCTTCCTCCC
CCCCCTCCTGTGAGCCCGACCGCCCCGAACCGCCCCGTCCCGTCCCCCGG
CCCGGGACGCCCCCCCCGCCCTGGGACGCCCGACCAAACCCGCGTTTATC
GTGACGGCCAGGCGCGGGGGCGACGGTGCACGCCTGCGCGCTGGCGGACG
GG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1245:156568..158169+

>mRNA_H-akashiwo_Contig1245.6.1 ID=mRNA_H-akashiwo_Contig1245.6.1|Name=mRNA_H-akashiwo_Contig1245.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=252bp|location=Sequence derived from alignment at H-akashiwo_Contig1245:156568..158169+ (Heterosigma akashiwo CCMP452)
ATGCTTAAAGCGATTCATTCCATAGGCCAGGGTCTGTCTGGCATTGGTCG
CCAAATTGATGGGTTGGGGAGGACTTTGGGAGGAGCCTACACGGAAAGAT
TGGTGCTCTCAGAGAATGCGCTAAGCTACAAGACGGCGATTCCTGAAACA
TTTAAAGCCGCTTTTGTGGCGCCAACGGCAACCATCCTTGGTGATGTCAA
AGTTGGTGCGGGTCTAGCGTGGGTTGGGGAGCAACCATTCGTGGAGACGT
AA
back to top