mRNA_H-akashiwo_Contig995.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig995.13.1
Unique NamemRNA_H-akashiwo_Contig995.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: A0A836CBU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.080e-18
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    7 ENGIPLMSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWLGS 177
            + G+P+M+P+AI +   E++GYETPELND L LHF+GYR+IENLEPYT +KALWLGS
Sbjct:   31 KGGLPVMTPDAIRQAALEDNGYETPELNDRLYLHFKGYRRIENLEPYTAVKALWLGS 87
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: A0A6H5KFG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.790e-17
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 VDENGIPLMSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWLGSN 180
            VD +G+P+M+  A+ +   +++GYETPELND L LHF+GYRKI+NLEPYT LKALWLG N
Sbjct:   69 VDSSGLPIMTAAALRQVAIDDEGYETPELNDRLYLHFKGYRKIQNLEPYTSLKALWLGGN 128
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: A0A6T7GNB7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GNB7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.190e-17
Identity = 37/49 (75.51%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:   25 MSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWL 171
            M+PEA++++C+ENDGYETPELND L LHF+GY++IENLEPYT+LKALWL
Sbjct:    5 MTPEALVKSCQENDGYETPELNDQLYLHFKGYQRIENLEPYTQLKALWL 53
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: F0XXZ9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXZ9_AURAN)

HSP 1 Score: 85.5 bits (210), Expect = 5.980e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   13 GIPLMSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWL 171
            G+P M+ E +L +C ENDGYETPELND L LHF+G+++IENLEPYT LK LWL
Sbjct:   13 GLPRMTKELLLASCLENDGYETPELNDNLYLHFKGFQRIENLEPYTGLKGLWL 65
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: A0A5A8CHV7_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CHV7_CAFRO)

HSP 1 Score: 84.0 bits (206), Expect = 2.430e-15
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    4 DENGIPLMSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWL 171
            D  G+P+MSP AI   C  +DGYE+PELN+TL LHFRG+ +I+NLEPYTEL+AL+L
Sbjct:   21 DTTGVPVMSPTAITAACLRHDGYESPELNETLYLHFRGFLRIQNLEPYTELRALFL 76
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: A0A1V9ZFA3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFA3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.640e-15
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   16 IPLMSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWLGSN 180
            +P+M  E + + C +NDGYETPELND L +HF+G++KIE LEPY  LKALWL SN
Sbjct:   31 LPVMDLETLTQICVDNDGYETPELNDNLYVHFKGFQKIEGLEPYFNLKALWLESN 85
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: D7FIR1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR1_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.990e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 VDENGIPLMSPEAILET-----CRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWLGSN 180
            VD +G+P+M+  A+ +        +++GYETPELND L LHF+GYRKI+NL+PYT LKALWLG N
Sbjct:   38 VDSSGLPIMTAAALRQARACPVAIDDEGYETPELNDRLYLHFKGYRKIQNLDPYTSLKALWLGGN 102
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: A0A8K1FKW3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKW3_PYTOL)

HSP 1 Score: 82.0 bits (201), Expect = 1.020e-14
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   16 IPLMSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWLGSN 180
            IP+M  E + E C +NDGYETPELND L  HF+G++KIE LEPY  LKALWL SN
Sbjct:   28 IPVMDAETLKELCVDNDGYETPELNDNLYAHFQGFQKIEGLEPYFNLKALWLESN 82
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: A0A6A4ZNP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZNP6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.120e-14
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   16 IPLMSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWLGSN 180
            +P+M  E +++ C +NDGYETP+LND L  HF+G++KIE LEP+  LKALWL SN
Sbjct:   31 LPVMDRETLVQLCVDNDGYETPDLNDNLFAHFKGFQKIEGLEPFFNLKALWLESN 85
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BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Match: K3WYY9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYY9_GLOUD)

HSP 1 Score: 81.3 bits (199), Expect = 1.920e-14
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   16 IPLMSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWLGSN 180
            IP+M  E + E CRENDGYETPELND L  HF+G+++IE L+ Y  LKALWL SN
Sbjct:   30 IPIMDAETLRELCRENDGYETPELNDNLYAHFQGFQRIEGLDAYFNLKALWLESN 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig995.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBU5_9STRA4.080e-1866.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KFG8_9PHAE1.790e-1763.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6T7GNB7_9STRA2.190e-1775.51Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0XXZ9_AURAN5.980e-1767.92Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A5A8CHV7_CAFRO2.430e-1564.29Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A1V9ZFA3_9STRA2.640e-1561.82Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
D7FIR1_ECTSI5.990e-1556.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A8K1FKW3_PYTOL1.020e-1465.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A4ZNP6_9STRA1.120e-1458.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
K3WYY9_GLOUD1.920e-1463.64Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig995contigH-akashiwo_Contig995:424802..425395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009033326.1
Preferred namednaaf1
PFAMsLRR_4,LRR_9
Model size594
Max annot lvl2759|Eukaryota
KEGG koko:K19750
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.18e-15
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
Cds size570
COG categoryL
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388070.744955-CDS-H-akashiwo_Contig995:424801..4253711681388070.744955-CDS-H-akashiwo_Contig995:424801..425371Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig995 424802..425371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388070.757642-UTR-H-akashiwo_Contig995:425371..4253951681388070.757642-UTR-H-akashiwo_Contig995:425371..425395Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig995 425372..425395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig995.13.1prot_H-akashiwo_Contig995.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig995 424802..425371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig995.13.1

>prot_H-akashiwo_Contig995.13.1 ID=prot_H-akashiwo_Contig995.13.1|Name=mRNA_H-akashiwo_Contig995.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=190bp
MSPEAILETCRENDGYETPELNDTLLLHFRGYRKIENLEPYTELKALWLG
SNGLGKIEGISHLSKLRCLYLQQNLLNKIENLEGLTSLVQLDVSQNQLKR
LENLSCLPNLETLNTAKNGFDCAEEIEELACCPALTNVDLSGNNLTGEAV
LDVLIGIPKLVAVNIAGNPVVGQTPQFRKKLITRIPSLKY
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mRNA from alignment at H-akashiwo_Contig995:424802..425395-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig995.13.1 ID=mRNA_H-akashiwo_Contig995.13.1|Name=mRNA_H-akashiwo_Contig995.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=594bp|location=Sequence derived from alignment at H-akashiwo_Contig995:424802..425395- (Heterosigma akashiwo CCMP452)
GTTGACGAGAATGGCATCCCATTAATGTCTCCGGAGGCAATTCTGGAGAC
ATGCCGGGAAAACGATGGCTATGAAACACCTGAACTCAATGATACGTTAC
TTCTTCACTTCAGAGGCTACCGCAAGATCGAAAATCTTGAACCGTACACT
GAACTGAAAGCACTATGGTTGGGATCCAACGGCCTTGGCAAGATTGAGGG
AATCTCACACTTATCCAAGCTACGCTGCCTTTACTTACAACAAAATCTAC
TAAACAAGATTGAAAACTTAGAAGGGCTCACATCACTGGTACAACTTGAT
GTGAGCCAAAACCAGTTGAAAAGGCTTGAAAACCTCTCCTGTCTCCCTAA
CCTTGAGACGCTGAACACCGCCAAAAATGGTTTTGACTGTGCCGAGGAAA
TTGAGGAGCTCGCTTGCTGCCCAGCCCTAACCAATGTTGACCTCAGCGGT
AACAACCTGACAGGCGAGGCTGTGCTTGATGTGTTGATAGGTATACCCAA
GCTTGTCGCCGTCAATATAGCCGGAAACCCGGTGGTTGGCCAGACCCCGC
AGTTCCGTAAGAAGCTGATCACAAGGATCCCCAGCCTCAAGTAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig995:424802..425395-

>mRNA_H-akashiwo_Contig995.13.1 ID=mRNA_H-akashiwo_Contig995.13.1|Name=mRNA_H-akashiwo_Contig995.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=570bp|location=Sequence derived from alignment at H-akashiwo_Contig995:424802..425395- (Heterosigma akashiwo CCMP452)
ATGTCTCCGGAGGCAATTCTGGAGACATGCCGGGAAAACGATGGCTATGA
AACACCTGAACTCAATGATACGTTACTTCTTCACTTCAGAGGCTACCGCA
AGATCGAAAATCTTGAACCGTACACTGAACTGAAAGCACTATGGTTGGGA
TCCAACGGCCTTGGCAAGATTGAGGGAATCTCACACTTATCCAAGCTACG
CTGCCTTTACTTACAACAAAATCTACTAAACAAGATTGAAAACTTAGAAG
GGCTCACATCACTGGTACAACTTGATGTGAGCCAAAACCAGTTGAAAAGG
CTTGAAAACCTCTCCTGTCTCCCTAACCTTGAGACGCTGAACACCGCCAA
AAATGGTTTTGACTGTGCCGAGGAAATTGAGGAGCTCGCTTGCTGCCCAG
CCCTAACCAATGTTGACCTCAGCGGTAACAACCTGACAGGCGAGGCTGTG
CTTGATGTGTTGATAGGTATACCCAAGCTTGTCGCCGTCAATATAGCCGG
AAACCCGGTGGTTGGCCAGACCCCGCAGTTCCGTAAGAAGCTGATCACAA
GGATCCCCAGCCTCAAGTAC
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