mRNA_H-akashiwo_Contig994.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig994.6.1
Unique NamemRNA_H-akashiwo_Contig994.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A6V1QFH4_HETAK (Alanine transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFH4_HETAK)

HSP 1 Score: 289 bits (740), Expect = 7.380e-91
Identity = 149/170 (87.65%), Postives = 151/170 (88.82%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGAARYAASPSLLPPLGSRGRPPQGRADAAV 793
            VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPP PGDASHARYA E+GAILASLRRRAARLHKALSALEGVTCNAPEGA  YA     LPP        QGRA  A+
Sbjct:  296 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPCPGDASHARYAAERGAILASLRRRAARLHKALSALEGVTCNAPEGAL-YAFPAVALPPRACAAAARQGRAPDAL 464          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A7S3AKY0_9EUKA (Alanine transaminase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AKY0_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 6.310e-47
Identity = 91/154 (59.09%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGAARYAASPSLLPP 745
            VYQENIY+    F SFKKV   +      +  P  QLVS HSISKGFLGECGLRGGY EL G  P  +AQL KL ++ LCSNT GQ+ TGLM  PP PGD SHA Y  E+  I+ASL+RRA RL +AL+ LEGVTCN P+GA  YA     LPP
Sbjct:    3 VYQENIYDSSLPFHSFKKVLKQM------TPEPPLQLVSLHSISKGFLGECGLRGGYMELCGFDPEVQAQLLKLVSIGLCSNTLGQIATGLMVKPPLPGDPSHAAYVAERDGIMASLQRRAQRLVRALNELEGVTCNQPQGA-MYAFPSITLPP 149          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A6V2S6R4_HETAK (Alanine transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2S6R4_HETAK)

HSP 1 Score: 167 bits (422), Expect = 2.240e-46
Identity = 80/145 (55.17%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDS---EAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGA 709
            VYQEN++   K F SF+KVA ++G+   +         QLVSFHS+SKGFLGECGLRGGY+++ G+P +A AQ+YKL +++LCSNT GQ+ TGLMC  PRPG  S  ++A E+ AIL S+RRRA +L  AL+ LEGV+CN+ +GA
Sbjct:   36 VYQENVWEEGKEFVSFRKVAIEMGYTGEEEITKPGEGLQLVSFHSVSKGFLGECGLRGGYFQVHGIPAAAAAQVYKLASISLCSNTVGQLTTGLMCALPRPGSPSFKKFARERDAILGSMRRRAGQLGAALNRLEGVSCNSAQGA 180          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A7S2UXD2_9STRA (Alanine transaminase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXD2_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.760e-45
Identity = 84/142 (59.15%), Postives = 103/142 (72.54%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGA 709
            VYQENI+     FTSFKKV  D+GF +       FQL+SFHS SKGF+GECGLRGGY+E+FG  P  RAQLYKL +V+LCSNT GQ+  GLM  PP+  DAS A Y  EK AIL S++RR+ +L +AL+ LEGV+CN  +GA
Sbjct:  169 VYQENIWTEVNPFTSFKKVVKDMGFEEEGEN--RFQLISFHSTSKGFIGECGLRGGYFEMFGFTPEVRAQLYKLASVSLCSNTIGQIALGLMVDPPKMSDASSAVYEKEKTAILGSMKRRSIKLVEALNKLEGVSCNLSQGA 308          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A097ITX1_9PHAE (Alanine transaminase n=8 Tax=Sargassum TaxID=3015 RepID=A0A097ITX1_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 5.950e-45
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGA 709
            VYQ NI+     F+SFKKVACD+G+   D +    QLVSFHS SKG+ GECGLRGGY E+ G+ P  RA+LYKL +++LCSNT GQ+  G+M  PP+PGD S+  +  E+G IL+SLRRR+  +HKAL+ +EG+TCN  +GA
Sbjct:  275 VYQSNIWKEGASFSSFKKVACDMGYHGEDGDE-RLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGMMVNPPKPGDPSYQTFEKERGDILSSLRRRSMMVHKALNEMEGITCNKADGA 415          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A7S3SIR1_EMIHU (Alanine transaminase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SIR1_EMIHU)

HSP 1 Score: 168 bits (426), Expect = 6.510e-45
Identity = 90/154 (58.44%), Postives = 108/154 (70.13%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGAARYAASPSLLPP 745
            VYQENI++  + F SFKKV  ++      S  P  QLVSFHS SKGFLGECGLRGGY+E+ G  P  +AQL KL ++ LCSNT GQ+ TGLM  PPRPGDAS+  Y+ E+ AILAS++RRA  L   L+ALEGVTCN P+GA  YA     LPP
Sbjct:  249 VYQENIWDGGRPFHSFKKVLMEM------SPRPNLQLVSFHSTSKGFLGECGLRGGYFEIVGFDPEVKAQLLKLISIGLCSNTLGQIATGLMVQPPRPGDASYEIYSGERDAILASMKRRATMLVDGLNALEGVTCNQPQGA-MYAFPSITLPP 395          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A097ITY8_9PHAE (Alanine transaminase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097ITY8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 7.880e-45
Identity = 84/142 (59.15%), Postives = 102/142 (71.83%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGA 709
            VYQ NI+     F+SFKKVACD+G    D +    QLVSFHS SKGFLGECGLRGGY E+ G+ P  RA+LYKL +++LCSNT GQ+ TGLM  PPR G+ S+  Y  E+  IL+SL RR+  +HKAL+ LEGVTCN  EGA
Sbjct:  272 VYQANIWKKGASFSSFKKVACDMGLTGKDGD-DRLQLVSFHSTSKGFLGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLATGLMINPPREGEPSYETYRKERDDILSSLERRSRMVHKALNELEGVTCNEAEGA 412          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A7S2GCA7_9STRA (Alanine transaminase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCA7_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.480e-44
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGA 709
            VYQENI+ PD+ F SF+KVA +LG+ D   +  + QL+SFHS+SKGF+GECG+RGGY+ELFG+    +AQ+YKL +++LCSNT GQVMTGLM  PP  G+ S ++Y  E+ + LASL+RRA ++  AL AL GV C   +GA
Sbjct:  105 VYQENIWRPDRPFFSFRKVAVELGYEDV--QGGDLQLISFHSVSKGFIGECGIRGGYFELFGIDDDVKAQMYKLASISLCSNTPGQVMTGLMVKPPAEGEESFSQYNEERLSTLASLKRRADKVASALDALPGVHCRPSDGA 244          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A7S2UX91_9STRA (Alanine transaminase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX91_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.180e-43
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGA 709
            VYQEN++     FTSFK+V  D+GF + + E   FQL+SFHS SKGF+GECGLRGGY+E+FG  P  RAQLYKL +V+LCSNT GQV  GLM  PP     +  RY  EK AIL S+++R+ +L +AL+ LEGVTCN  +GA
Sbjct:  361 VYQENVWTEGNPFTSFKRVVRDMGFEEEEGER-RFQLISFHSTSKGFIGECGLRGGYFEMFGFAPEVRAQLYKLASVSLCSNTLGQVAVGLMVDPPTLKGRTRDRYEAEKAAILQSMKKRSVKLVEALNRLEGVTCNLSQGA 501          
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Match: A0A482S5F7_9ARCH (Alanine transaminase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5F7_9ARCH)

HSP 1 Score: 162 bits (409), Expect = 6.590e-43
Identity = 76/142 (53.52%), Postives = 105/142 (73.94%), Query Frame = 2
Query:  284 VYQENIYNPDKRFTSFKKVACDLGFRDSDSEAPEFQLVSFHSISKGFLGECGLRGGYYELFGVPPSARAQLYKLGAVALCSNTCGQVMTGLMCTPPRPGDASHARYAVEKGAILASLRRRAARLHKALSALEGVTCNAPEGA 709
            VYQENI+ PD +FTSF+KVA ++G + S  +    Q+ SFHSISKGF GECGLRGGY E+FG+P   + +LYKL +++LCSNT GQ+ TGLM  PP+ G+ S++ Y  E+  IL S++RRA  L+K L+++EG+ C + EGA
Sbjct:  262 VYQENIWKPDAKFTSFRKVAYEMGIKPSSGD---LQMFSFHSISKGFYGECGLRGGYLEIFGIPNEVKDELYKLASISLCSNTIGQIATGLMVQPPKTGEPSYSTYVKERDGILQSMKRRAELLNKELNSVEGMKCASSEGA 400          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig994.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1QFH4_HETAK7.380e-9187.65Alanine transaminase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3AKY0_9EUKA6.310e-4759.09Alanine transaminase n=1 Tax=Haptolina ericina Tax... [more]
A0A6V2S6R4_HETAK2.240e-4655.17Alanine transaminase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UXD2_9STRA3.760e-4559.15Alanine transaminase n=2 Tax=Fibrocapsa japonica T... [more]
A0A097ITX1_9PHAE5.950e-4555.63Alanine transaminase n=8 Tax=Sargassum TaxID=3015 ... [more]
A0A7S3SIR1_EMIHU6.510e-4558.44Alanine transaminase n=1 Tax=Emiliania huxleyi Tax... [more]
A0A097ITY8_9PHAE7.880e-4559.15Alanine transaminase n=1 Tax=Dictyopteris undulata... [more]
A0A7S2GCA7_9STRA2.480e-4455.63Alanine transaminase n=1 Tax=Florenciella parvula ... [more]
A0A7S2UX91_9STRA2.180e-4357.04Alanine transaminase (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482S5F7_9ARCH6.590e-4353.52Alanine transaminase n=1 Tax=archaeon TaxID=190666... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig994contigH-akashiwo_Contig994:301960..302927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI43749
PFAMsAminotran_1_2
Model size968
Max annot lvl4776|Peronosporales
KEGG rclassRC00006,RC00008
KEGG koko:K00814
KEGG ReactionR00258
KEGG Pathwayko00220,ko00250,ko00710,ko01100,ko01120,ko01200,ko01210,ko01230,map00220,map00250,map00710,map01100,map01120,map01200,map01210,map01230
KEGG ModuleM00171
Hectar predicted targeting categorymitochondrion
Exons1
Evalue7.39e-21
EggNOG OGsCOG0436@1|root,KOG0258@2759|Eukaryota,3QD3A@4776|Peronosporales
EC2.6.1.2
DescriptionAminotransferase class I and II
Cds size276
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388070.613219-CDS-H-akashiwo_Contig994:301959..3022351681388070.613219-CDS-H-akashiwo_Contig994:301959..302235Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig994 301960..302235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388070.6276612-UTR-H-akashiwo_Contig994:302235..3029271681388070.6276612-UTR-H-akashiwo_Contig994:302235..302927Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig994 302236..302927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig994.6.1prot_H-akashiwo_Contig994.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig994 301960..302235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig994.6.1

>prot_H-akashiwo_Contig994.6.1 ID=prot_H-akashiwo_Contig994.6.1|Name=mRNA_H-akashiwo_Contig994.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=92bp
MRPRAPPGTLLRRRCCPRWARAGGRRRGAPTPLYCLALLEATGVVVVPGS
GFGQAAGTHHFRTTMLPPEDRFEEVLRRVQVFHAGFMDQYR*
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mRNA from alignment at H-akashiwo_Contig994:301960..302927-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig994.6.1 ID=mRNA_H-akashiwo_Contig994.6.1|Name=mRNA_H-akashiwo_Contig994.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=968bp|location=Sequence derived from alignment at H-akashiwo_Contig994:301960..302927- (Heterosigma akashiwo CCMP452)
GGTGTCCTCGTGCCCATTCCGCAGTACCCCCTGTACTCCGCCCTCAGCAC CATGTTCAAGGCCACCCTGGTCCCCTACTACTTGGGCGAGGCCAACGGCT GGAGTCTCGGCTGGATCACTCCCGCGACGCCCTGGAGGGCGCGCGCGCGC AGGGGGTGACTGTGCGCGGCCTGGTGGTCATTAACCCGGGCAACCCCACG GGCCAAGTGCTGGCGGAGGACAACATGCGCGCTGGGCCAGGCTTCTGCGG CCGCTGAGCGGCTGGTCCTGCTGGCGGATTTAGGTTTATCAAGAGAACAT CTACAACCCGGACAAGCGGTTCACCAGCTTCAAGAAGGTCGCCTGCGACC TGGGCTTCCGGGACAGCGACAGCGAGGCGCCGGAGTTCCAGCTGGTCTCC TTCCACAGCATCAGCAAGGGCTTCCTGGGGGAGTGCGGCCTCCGCGGGGG CTACTACGAGCTCTTTGGGGTGCCGCCGAGCGCGCGGGCGCAGCTGTACA AGCTGGGCGCCGTCGCGCTGTGCAGCAACACCTGCGGCCAGGTGATGACG GGGCTCATGTGCACTCCCCCGCGCCCGGGGGACGCCTCCCACGCGCGCTA CGCGGTGGAGAAGGGCGCCATCCTGGCCTCGCTGCGGCGGCGCGCGGCGC GGCTGCACAAGGCGCTGAGCGCGCTGGAGGGCGTGACTTGTAATGCGCCC GAGGGCGCCGCCAGGTACGCTGCTTCGCCGTCGCTGCTGCCCCCGCTGGG CTCGCGCGGGCGGCCGCCGCAGGGGCGCGCCGACGCCGCTGTACTGCCTG GCGCTGCTGGAGGCCACGGGCGTGGTGGTGGTGCCGGGGTCGGGCTTCGG CCAGGCGGCGGGCACGCACCACTTCCGCACCACGATGCTGCCCCCCGAGG ACCGGTTCGAGGAGGTGTTGCGGCGGGTGCAGGTGTTCCACGCGGGTTTC ATGGACCAGTACCGCTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig994:301960..302927-

>mRNA_H-akashiwo_Contig994.6.1 ID=mRNA_H-akashiwo_Contig994.6.1|Name=mRNA_H-akashiwo_Contig994.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=276bp|location=Sequence derived from alignment at H-akashiwo_Contig994:301960..302927- (Heterosigma akashiwo CCMP452)
ATGCGCCCGAGGGCGCCGCCAGGTACGCTGCTTCGCCGTCGCTGCTGCCC
CCGCTGGGCTCGCGCGGGCGGCCGCCGCAGGGGCGCGCCGACGCCGCTGT
ACTGCCTGGCGCTGCTGGAGGCCACGGGCGTGGTGGTGGTGCCGGGGTCG
GGCTTCGGCCAGGCGGCGGGCACGCACCACTTCCGCACCACGATGCTGCC
CCCCGAGGACCGGTTCGAGGAGGTGTTGCGGCGGGTGCAGGTGTTCCACG
CGGGTTTCATGGACCAGTACCGCTAG
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