mRNA_H-akashiwo_Contig984.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig984.8.1
Unique NamemRNA_H-akashiwo_Contig984.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig984.8.1 vs. uniprot
Match: A0A7S3XKR9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKR9_HETAK)

HSP 1 Score: 109 bits (272), Expect = 1.110e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 2 
Query:   14 QGPFPGSGDSEMVGRLKIAIRWEHVPGQPLDCLSFTVPSMEAADRFVDGL 163
            QGPFPGSGDSEMVGRLKIAIRWEHVPGQPLDCLSFTVPSMEAADRFVDGL
Sbjct:  202 QGPFPGSGDSEMVGRLKIAIRWEHVPGQPLDCLSFTVPSMEAADRFVDGL 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig984.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XKR9_HETAK1.110e-27100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig984contigH-akashiwo_Contig984:384857..385346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.527667-CDS-H-akashiwo_Contig984:384857..3849001681388067.527667-CDS-H-akashiwo_Contig984:384857..384900Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig984 384858..384900 -
1681388067.5469313-CDS-H-akashiwo_Contig984:385224..3853461681388067.5469313-CDS-H-akashiwo_Contig984:385224..385346Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig984 385225..385346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig984.8.1prot_H-akashiwo_Contig984.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig984 384858..385346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig984.8.1

>prot_H-akashiwo_Contig984.8.1 ID=prot_H-akashiwo_Contig984.8.1|Name=mRNA_H-akashiwo_Contig984.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
AGGHTGPLSRLRGLRDGGAAQDCYPVGARAGATAGLPQLHRAQYGGRGPF
RGRAG
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mRNA from alignment at H-akashiwo_Contig984:384857..385346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig984.8.1 ID=mRNA_H-akashiwo_Contig984.8.1|Name=mRNA_H-akashiwo_Contig984.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=490bp|location=Sequence derived from alignment at H-akashiwo_Contig984:384857..385346- (Heterosigma akashiwo CCMP452)
GCGGGCGGGCACACAGGGCCCCTTTCCCGGCTCAGGGGACTCCGAGATGG
TGGGGCGGCTCAAGATTGCTATCCGGTGGGAGCACGTGCCGGGGCAACCG
CTGGACTGCCTCAGCTTCACCGGTATGCGAGCAGCTCCCGCAACCCCCCG
CCCCCCCCGCCCAAGGCAGAGAACACGCGCGTGCGCTTGCTTGAGGCGCG
TGCGCTCGCTGCGGCTTGGGAGGGTGGTGGGGTCGCAAGTGGGGTCGCGG
GGCGCGCATCGCCGTCTTGTGGACGGGGGCACGGCCGGGGCACCACGCGG
GGCGGTGGCGGTGGCGGCGGCGGCGGCGGGCACGTTCTCCTCAGCGCGGC
GTACTCGGCGGCGGGGAGGGGGGGGCAGGGGGGCAGCGGGAGCGGCCGGC
CACGGGCGCCCCCCCCTCCACCCCTCCCATCCGTCTCTCCCCTCAGTGCC
CAGTATGGAGGCCGCGGACCGTTTCGTGGACGGGCTGGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig984:384857..385346-

>mRNA_H-akashiwo_Contig984.8.1 ID=mRNA_H-akashiwo_Contig984.8.1|Name=mRNA_H-akashiwo_Contig984.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig984:384857..385346- (Heterosigma akashiwo CCMP452)
GCGGGCGGGCACACAGGGCCCCTTTCCCGGCTCAGGGGACTCCGAGATGG
TGGGGCGGCTCAAGATTGCTATCCGGTGGGAGCACGTGCCGGGGCAACCG
CTGGACTGCCTCAGCTTCACCGTGCCCAGTATGGAGGCCGCGGACCGTTT
CGTGGACGGGCTGGC
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