mRNA_H-akashiwo_Contig98.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig98.13.1
Unique NamemRNA_H-akashiwo_Contig98.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A7S3UUM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUM9_HETAK)

HSP 1 Score: 140 bits (352), Expect = 2.760e-38
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAFVAA 240
            LNPESEYEGGRLCFYS G LT LSR+PGSCSHH+P +LHGVT LISGTRKSLFVLD+ NGLGE+DVI+VT E +AAFVAA
Sbjct:   74 LNPESEYEGGRLCFYSNGKLTELSRRPGSCSHHSPGVLHGVTNLISGTRKSLFVLDRNNGLGEKDVINVTPEHIAAFVAA 153          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A812I3A5_9DINO (Ubi protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I3A5_9DINO)

HSP 1 Score: 89.4 bits (220), Expect = 3.910e-18
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAFVAASDIPLTRT*C 270
            L+   EY GGRLCF+  G L VL R  GS   H P +LHGVT L  GTRKSLFV+D  NGLGE  V+  +   +  F A  ++P  +  C
Sbjct:  239 LSEPWEYNGGRLCFFVMGGLHVLERSAGSLCQHPPAVLHGVTALKEGTRKSLFVVDMQNGLGEEGVVVPSHIHVQGFQATRELPQVQKCC 328          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A1Z5KL01_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL01_FISSO)

HSP 1 Score: 87.0 bits (214), Expect = 2.680e-17
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAF 231
            LN  SEY GGRL F+    L VL R  GS   H  ++LHGVT L SGTRKSLFV+D+ NGLGE  V++V+ +Q+  F
Sbjct:  236 LNDPSEYVGGRLVFFVNDVLHVLERPAGSLVQHPRQVLHGVTCLTSGTRKSLFVVDRFNGLGEGGVVEVSSDQVDGF 312          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A7S0AG55_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AG55_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.780e-17
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAFVAA 240
            LN   EYEGG+LCF+    +  + R  GS   H P ILHGVT++  GTRKSLFV+D +N LG   VI VT   +  F+A+
Sbjct:   22 LNSLDEYEGGKLCFFVNDRIHFVPRVAGSMVQHPPHILHGVTSVTKGTRKSLFVVDDSNSLGMEGVIKVTANHVVMFLAS 101          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A7S3GUN0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUN0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.690e-17
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYS-RGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAFVA 237
            LN ++EYEGGRLC+++ R  + VL R+ G  + H+  +LH VT LISGTR SLFV+D+ANGLGE  +I+   E + + +A
Sbjct:   49 LNDDTEYEGGRLCYFTLRNGVEVLQRQAGDFTKHSCDVLHAVTRLISGTRYSLFVVDRANGLGETGIIEADVELVKSILA 128          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A812QEB8_9DINO (UBC protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QEB8_9DINO)

HSP 1 Score: 85.9 bits (211), Expect = 7.510e-17
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAFVAA------SDIPLTRT*C 270
            L+  SEY+GGRLCF+    L VL R  GS   H   +LH VT L  GTRKSLFV+DK NGLGE  V+  ++E +  F+        SD P  +  C
Sbjct:  240 LSEPSEYQGGRLCFFVNDRLHVLERPAGSMCQHPRAVLHAVTALTGGTRKSLFVVDKCNGLGENGVVVASREDVQEFLELVASREPSDCPQVQMCC 335          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A7S3DDB4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DDB4_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.850e-16
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKAN 177
            LNPE+EYEGG+L F++   + V  R PGS S H  K+LHGVT L  GTRKSLFV+D+AN
Sbjct:   54 LNPETEYEGGKLVFFNNNEIVVAPRPPGSLSVHEAKVLHGVTKLKRGTRKSLFVVDEAN 112          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A812RHV2_9DINO (TU20 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RHV2_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 2.630e-16
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAFVAASDIPLTRT*C 270
            L+   EY+GGRLCF+    L VL R  GS   H   +LHGVT L  GTRKSLFV+D  NGLGE  V+  +   +  F A+ ++P  +  C
Sbjct:  241 LSEPWEYKGGRLCFFVMDGLHVLERPAGSTCQHPRTVLHGVTALQEGTRKSLFVVDTENGLGEEGVVLASHVHVQGFQASRELPQVQKCC 330          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A0G4FBA2_9ALVE (Ubiquitin-like domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FBA2_9ALVE)

HSP 1 Score: 80.9 bits (198), Expect = 7.340e-15
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAF 231
            +N ++EY GGRL F++   L    R PGS + H  K+LHGVT L SG RKSLFV+D  NGLG+ DV   T + + +F
Sbjct:  246 VNDQAEYAGGRLVFFTEKGLEFPERTPGSVTVHCRKVLHGVTHLESGVRKSLFVVDSGNGLGQSDVHYATSDDVESF 322          
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Match: A0A1Z5KFC5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFC5_FISSO)

HSP 1 Score: 79.0 bits (193), Expect = 2.280e-14
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRKSLFVLDKANGLGERDVIDVTQEQMAAFV 234
            LN  S+Y GGRL ++    L V  R  GS   H   +LHGVT+L SGTRKSLFV+D  NGLGE  V++V+   +  F+
Sbjct:  238 LNDPSKYAGGRLVYFVNDVLHVPERPVGSLVQHPSSVLHGVTSLRSGTRKSLFVVDTTNGLGEGGVVEVSSAHVEGFL 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig98.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7S3UUM9_HETAK2.760e-3881.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812I3A5_9DINO3.910e-1847.78Ubi protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]
A0A1Z5KL01_FISSO2.680e-1754.55Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S0AG55_9STRA2.780e-1748.75Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S3GUN0_9STRA6.690e-1750.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812QEB8_9DINO7.510e-1745.83UBC protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]
A0A7S3DDB4_9EUKA1.850e-1661.02Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A812RHV2_9DINO2.630e-1645.56TU20 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A0G4FBA2_9ALVE7.340e-1549.35Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A1Z5KFC5_FISSO2.280e-1448.72Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig98contigH-akashiwo_Contig98:909496..909957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0TQG2
PFAMsZZ,ubiquitin
Model size463
Max annot lvl2759|Eukaryota
KEGG koko:K08770
KEGG Pathwayko03320,map03320
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.56e-10
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota
Descriptioncellular macromolecule catabolic process
Cds size267
COG categoryO
BRITEko00000,ko00001,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388066.1305041-CDS-H-akashiwo_Contig98:909495..9097621681388066.1305041-CDS-H-akashiwo_Contig98:909495..909762Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 909496..909762 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388066.1451602-UTR-H-akashiwo_Contig98:909762..9099571681388066.1451602-UTR-H-akashiwo_Contig98:909762..909957Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig98 909763..909957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig98.13.1prot_H-akashiwo_Contig98.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig98 909496..909762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig98.13.1

>prot_H-akashiwo_Contig98.13.1 ID=prot_H-akashiwo_Contig98.13.1|Name=mRNA_H-akashiwo_Contig98.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
LNPESEYEGGRLCFYSRGALTVLSRKPGSCSHHTPKILHGVTTLISGTRK
SLFVLDKANGLGERDVIDVTQEQMAAFVAASDIPLTRT*
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mRNA from alignment at H-akashiwo_Contig98:909496..909957+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig98.13.1 ID=mRNA_H-akashiwo_Contig98.13.1|Name=mRNA_H-akashiwo_Contig98.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=462bp|location=Sequence derived from alignment at H-akashiwo_Contig98:909496..909957+ (Heterosigma akashiwo CCMP452)
TTAAACCCTGAGAGTGAGTATGAGGGGGGGCGTCTTTGTTTTTATTCGAG AGGAGCGCTGACTGTACTCTCTCGCAAGCCCGGCTCTTGCTCCCACCACA CTCCAAAGATATTGCATGGTGTGACAACCCTCATCTCTGGGACACGCAAA AGTCTTTTTGTACTTGACAAAGCCAATGGTCTTGGTGAACGAGATGTCAT TGACGTGACTCAGGAGCAAATGGCTGCTTTCGTTGCAGCCTCTGACATTC CACTCACGAGAACATGATGTACAGGATGAATCCGCTAGCTATAGTTTGCA CCAATTCATCTTTGTTTTCCTGTTTAGGACTTTTTTTACCGCTAAAGATG CTTGATTCCACCAGTGGGTCGCTGCCTGAACTGGCAGCATGATCTGAATC GATCAACACTTGAATCGATCAACACTTGTCTGGTTTCACAAAGACATAAA CTTGTTGCATAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig98:909496..909957+

>mRNA_H-akashiwo_Contig98.13.1 ID=mRNA_H-akashiwo_Contig98.13.1|Name=mRNA_H-akashiwo_Contig98.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig98:909496..909957+ (Heterosigma akashiwo CCMP452)
TTAAACCCTGAGAGTGAGTATGAGGGGGGGCGTCTTTGTTTTTATTCGAG
AGGAGCGCTGACTGTACTCTCTCGCAAGCCCGGCTCTTGCTCCCACCACA
CTCCAAAGATATTGCATGGTGTGACAACCCTCATCTCTGGGACACGCAAA
AGTCTTTTTGTACTTGACAAAGCCAATGGTCTTGGTGAACGAGATGTCAT
TGACGTGACTCAGGAGCAAATGGCTGCTTTCGTTGCAGCCTCTGACATTC
CACTCACGAGAACATGA
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