mRNA_H-akashiwo_Contig98.32.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig98.32.1
Unique NamemRNA_H-akashiwo_Contig98.32.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig98.32.1 vs. uniprot
Match: A0A7S4DH93_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH93_HETAK)

HSP 1 Score: 118 bits (295), Expect = 2.550e-33
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    9 GHTAGPAHGGRGGRRRRGPDGDGAGRQHADLLPGGHGDHGCHARLRPLGAGPAARPP 179
            GHTAGPAHGGRGGRRRRGPDGDGAGRQHADLLPGGHGDHGCHARLRPLGAGPAARPP
Sbjct:   19 GHTAGPAHGGRGGRRRRGPDGDGAGRQHADLLPGGHGDHGCHARLRPLGAGPAARPP 75
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BLAST of mRNA_H-akashiwo_Contig98.32.1 vs. uniprot
Match: UPI000E281D6A (cytochrome P450 n=1 Tax=Streptomyces olivoreticuli TaxID=68246 RepID=UPI000E281D6A)

HSP 1 Score: 49.7 bits (117), Expect = 2.140e-5
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    4 QRDTLLAQLMGDEAEGDDA-GLTATELAGNMQTFFLAGMETTGATLAFALWELARRPALQ 180
            +RD +L+ L+   A  DD  GLT  ++   + TF  AG+ETTGAT+A+AL+E+AR PA++
Sbjct:  225 ERDDMLSLLLA--ARDDDGDGLTDKQVRDQVITFLFAGVETTGATIAWALYEIARHPAVE 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig98.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4DH93_HETAK2.550e-33100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI000E281D6A2.140e-546.67cytochrome P450 n=1 Tax=Streptomyces olivoreticuli... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig98contigH-akashiwo_Contig98:1512006..1518866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7213.XP_004534605.1
PFAMsp450
Model size181
Max annot lvl33208|Metazoa
KEGG koko:K14999
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114
Exons2
Evalue4.29e-06
EggNOG OGsCOG2124@1|root,KOG0158@2759|Eukaryota,38BTY@33154|Opisthokonta,3BF8S@33208|Metazoa,3CV2F@33213|Bilateria,41VYX@6656|Arthropoda,3SGMH@50557|Insecta,4560M@7147|Diptera
Descriptionheme binding. It is involved in the biological process described with oxidation-reduction process
Cds size150
COG categoryQ
BRITEko00000,ko00199,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.2873037-CDS-H-akashiwo_Contig98:1512005..15121431681388065.2873037-CDS-H-akashiwo_Contig98:1512005..1512143Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 1512006..1512143 -
1681388065.2982178-CDS-H-akashiwo_Contig98:1518824..15188361681388065.2982178-CDS-H-akashiwo_Contig98:1518824..1518836Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 1518825..1518836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.3080595-UTR-H-akashiwo_Contig98:1518836..15188661681388065.3080595-UTR-H-akashiwo_Contig98:1518836..1518866Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig98 1518837..1518866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig98.32.1prot_H-akashiwo_Contig98.32.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig98 1512006..1518836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig98.32.1

>prot_H-akashiwo_Contig98.32.1 ID=prot_H-akashiwo_Contig98.32.1|Name=mRNA_H-akashiwo_Contig98.32.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
MGDEAEGDDAGLTATELAGNMQTFFLAGMETTGATLAFALWELARRPALQ
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mRNA from alignment at H-akashiwo_Contig98:1512006..1518866-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig98.32.1 ID=mRNA_H-akashiwo_Contig98.32.1|Name=mRNA_H-akashiwo_Contig98.32.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6861bp|location=Sequence derived from alignment at H-akashiwo_Contig98:1512006..1518866- (Heterosigma akashiwo CCMP452)
GCGCAGCGGGACACACTGCTGGCCCAGCTCATGGGGGACGAGGTGGTGGG
GCGCCGCCCGCCGCCGCCGCCGCCCGCCGCCGCCGCCGCCGCCGCGGCGC
TACCGCCGCCCGGCAATCCGCTGAGGGGAACGCGGCCGCGGATGGTTGCG
GCCTGCTCCTGGTGTGGCTGGTGGCGCTTGGAGACGGTATATTTGCGGTT
CAAAGGAGGAGAGCGGTCACCCTGGCCTGCTGTTACCCCCCCCCCCTCCT
TGGGGAGCTGATGTGAGCAGCCATGCGAGTCAGAGGTATTTTGGAGCTTG
AGAATCTTGTACCCTCCACTTGCTTGCATGATGCCGGAAGAATTGAAGCG
AGCAATCCATCTTTTTTGTCACATCATGGTATAAATATAACAACATTAGA
ATGAAATAATAGATCATTGAAATGCATATCCACGCATCTCCTGAAACCTC
ATAATGTTACCCCTTTGAAATTAAATTTAATTGGTCAGGAGTCCAATCCG
GACTTTTCCGATGGGCCTATAAGTGCGCAAGAAGCTGGGGAGCAGGAGGG
GGAGCAGCAGGGAGCCGGGGGGCAGGGGGGGGAAGGAGTCATCGCGCTCC
TACTACACTCTGTACTTACTGCTACTGCTGGTGACGATGATGCTGTTCCT
TCTCCTTCTTGCAGCACGACAACACTGCAGCACGCCAGGCCTCACATGCA
GTGTAAAGCCATTGGAAGAGGAAGGCCCTTCTCCAGAGCTGTCACGAGGC
AGTGACGAGTTGGAGTCGCCGAGTTCGAGTAGTGAGGATGACACGGCTTC
ACGTAGCTCGGAGGAGAGTTTGAGTGAGGGGAACAGTGTGGAGGTTCCGG
CGAAGCGGGATGGATGGGTTGCTACTTCAGACGGGGGCGTCGGAGAAGCA
AAGGGAGAAGCAGAGGGGTTCGAGCCAGCTCCTCTTGGAAGGAGAGCTTG
CCGCGACTTGCAAAACGCGACAAGCAGAAAGAAACGGAAGCAGCAAGGTT
GGAGCACCACAAGTTCAAGGCGCAGCGGGCCAGCGAAGACCTGGCGCCTC
AACTAGAAGCATTGGCTGCTGTTGCCACGGCGCGCCAGGAAACGGAGGCC
AAGGGGCTGGTGGTAGAGGGGGCAAGGCAGCTTGGGGGTCGAGGCAGAGG
CAGAGGAGCCGGAAGGGGTAGGGGTCCTACACGGATGCAAGGGGGCAGGG
GGGACAGAGGCCATGGGCTAGCTAGGGGACCAGGCAGGGATGGAAGTGGT
GGGAATGAGGATGAGCTGGCCCCGAGATTGTGTGCCAGGCGTGGCATGGT
CAGGCTGGAGGTTGCTTGTGGGAAGTGCGGCATCATCAAACACCCACAAC
AACCTGAGGAATGGGGGGAGAAGGGTGAAGTGCGGTTCAGAAAATGCCTG
TTGGGAGGGTGCCACGTCTGCTGTAGGAGGGGGGAGCGTGGGGGGGGGGG
GATGCACCATTCAAGCGGGACGGGCTTTCTTTGGCAAGATGCTATAGATG
AATTTTCCGGCGTCCCGCAGTTGGAGGAGTGTATTGAAGAGAGATGTCAG
TCATGGAGGACCCAGCTGGGGTTGGGCTGGAGGACCATGGGTATAAAACG
ACAATGTGCCCTACAAAGTAGGTCTAGATCATTTTTCAAAGGTGCCACTC
CTAGTTAAACACCTAACTAGTCCCAACATTTAGCCTTTTTGGAATTATTT
GGTTTCTTCCCCTTCTTGTTTCGTTGCGCGGTAGAAAATCTGATGGTTCT
AAGCGTGGACATCACATGAGTTTGTTTTTCATCTTCCTTTTTCTTTTTCG
TTGAAATCCGAATGCTAAAAAAAAAAGGTCAAAAATAACATAGTTATAAT
CTGATAGTCAATATAGTTATGAGATGAAACTATAAAACGAAAAGAAAATA
TTTGAAAAGAAAAAAAGATTTGATGTGTGGGGTCAGACCCCAACACGTAC
GTCACTACTGTACGTTTGACATTTGAAATTGCACCCAGGACCCCACCGAA
GTGTAAAAACGATTTTAGTTGCTTAACCTTTGACGGTTACAAACTGTTTG
GGTGGGGGACCCCGACATCCGATACATTAGCCGAGTTACGGAATTTTACT
CATAACTTCAAAAAAAAAAAAGCAAAAAAGCCATAGCGCTTTTTTTCCAG
TAGCGCAACATCCTGTGGACCTGTAGCGGGGCTGCATACTTGGTGGGATG
GGTGGGCATCTACCTGGGGATACTTGTAGGTTATAGCAGAGGGGTTTCAG
CTGTGGGGCAAGGGCAGGTATATTGGAACCTGCTGTGATTTGGTGTAAAA
TAAGTTGGTAACTCTGGCAGTCTAAACGGCTTAGAGAAAATTGGATTCTG
TGTGTTTGGTATGAAGATGGTGCAGGTCTTGTTGTCGCCGCAGGAGGGGA
CACCCTCCTAGTGCGAGTGATTTGCCGAGACCTTTATGAACCAAGTTTAA
CATCATCATCATCATCATATATATATATATATATATGATGATGATGTCAA
TTTTAGTTTCAAGTCTAACCTTTCAAATCACTTCCGGGGCAGAACCCCTA
GCTTCTGTAAGCAGACCCTTCCACCTCAATCTGCCATTTCGCAATACCAG
TATACTGAAATCATCCTAAGAACACAAGTAAAAATACTCTCATATATCGC
GTTCCATATAATTAAAGACCGGGCCTTCTAATATATTAAGGCCGGGGTCT
ACCCCCGGCCTTCTATTGTATGAAAATTTGGACATCGGCCCCGAAAGAAA
TAATCGTGACCAAGAGCTCCCCAAGAAACGGTTACGCCAAATAACTCCGA
ACCACGATCACTTTTTGTGTGCAAAACGCATGAAAATGCATACACGAAGT
GATCGTGGTTCGGACTGAAGCCCCAAGATGAAAAATCATACTTCGTACAA
TATATGTATATATCGCCATTGGAAAACGACCGCAATATGTATGACTGCGA
TCGTCAGTGAATTATGCTGCTGTCATCTTTATTGATACGATAAAGTTGTG
CGAAGTTCCGGATAAATCATTTTATTTTTTAATTTTGATCACGAAATACC
GTAGTTCAGAAGTGTGCTTTGTCATTTGTATTTTTTACCCCCCAAATAAT
TATGTTCCTCGAATAATCGCTATTTTACTAATAAAATTTCATATTTGAAA
AGATTTTTTTTTTATAAAAGTTTGAAATTTTTTAAAAAGGACGACGACGA
CGACCACGTAATATATATACACGACGACGGCAGCCCCGAGGAAAAGCTAT
TCTTTGACGATATTCAAAAGGAGACTGACTGATCGACGAATACCACCAGA
CTATGCATGGGTCTGCAGTCGGCCTTCTATTACCTGGATCTGCGATCGGC
CTTCTATTCAATGGATCGTCTCTTCCCTTGATATGGGGGGAGGCCTTCTA
AAATATGGAAATTTTGACGTTTGCCAGCCTCAGAAATGTCCCTCATAAGG
CCTTACCGGCCTTCTATTGCACCCCCCGGTCTTTAATTATATATGGAACA
TGTTACCACGATTTTCCCTGCATCATTGGACCTCTGCTGTGACACCATAC
ATACTACTCCACCTACTCCTCCTCCTGCGGCCCCAGCTTGCCCCCCACTG
ATTGGTAGCCCCATGCAAGCCTCCCCATCCCCATCCCCACCCCTTAGTGC
AGCCCCAGCGGACGCTTCCACTCCTGCCAAAGGGCCTCTATCCGCTCGCC
TGTCCACTTTCTGTGGGGGTTGTCCTTGCACAACGCAAAGAAAAAGGCCC
GCCCTTCCTCCAAGCTGCAGCCTCTCCCCCCGCGCCCCCCCCCGCCAGCA
GCAGATGTGACAGCCCCCCTTGATCATGAACCTGTGGATTGGGTAGTGGG
GTTGCCTAGCGATGCCGCACTCCCCACAAGCCACCTCAAAGACATGGAAG
TCGCGCTCCCCACTGCCGTACCTGACCTCGGCGTCAGAGAAGGGCGCCGC
CTGGCGCCCCCACAGCCCCCGCTGACCCCCTTCCAGCCGGACCTCTGCCT
CGGCCACCTCTTCCCCCAGGTGCTACTGGGCCTCTCCCTCTCCCAGTGGT
GCCTCTGCCCCTGCCTCGGCCTGCAAGCTGCCCTGCCCCCTCTGCTGGCC
CCTTGGCCTCTGCTTCTTGGCGTGCTTTGGCTGCTCTAGCTAGTGTTTCC
CTTTGCAGTTCCAGGTCTTTTGCCGCACACTCTTCCTCTCTCATCTGGCG
CTGTAACCTCTCTGATTCCTTTTCTCTCTGCTGGTCTTATTTTTCAAGCC
GGCGGCAAGCCCTCCGCCCTAGGAGAGCTGGCTCAAATTCCCCATCTTCC
CCCTCTATTACCTCCCCCTTTATTTCCCAAACGCCACCATCCGAATGGGC
TTCCCATTCAGCCCATTTCCCCGGGACTGCCACACACTGCTTTTGTCCGT
TGAACTCTCCTCAGAGCTGTTAGAAGTCGGATCATCTTCACTGCTTAACG
ATTCCGTCTCGTCGCCGCAAAGTGACGGCTCCACAGGAGACCTTGGCACC
ATTCCCCATATCTCCAAAGACGGCCCCGCAAGCTAAATCGTAGAGACACC
ACTAGCGACGTGAGCAGCAGCAGCGATGAGATAAGAAGAAAACGAGGAGG
CTGAGGATGATGACGATGAGCCTCCTTCTCCTTCTCCTTCTCCCTTTTCC
TCCCGCTGCGCAGCAGCAGCAGCCGGTGACTCTTCCCGGCCCTCAGAGTT
CCTCCCAGCCCCGCTCGCTGTGCCCATTTGGAGGTTGTCCTCTTCAGGCT
CACCAATCGGTGACGGCTGTGAATCTTCCCGCTGCCCGTTCTCCCCGTTG
GGCTCCCCCCCTGAATCCAACTGGCCATCCCCACACCCACCCTTCTGCGA
ACCATCCAAAATGTTGTTGCTGCGGAGAATTTAATCCGTTCCCCTCTTCT
GATCCTGTCAGTAAGCTCATCCCCCTGTGCCCCCTGTTGTTGCCCCCCCC
TTCGTTGCTCGCACAGCCATAGACCCTCCTCCTCTGCTGCCTCCTCTGCT
CGTGCTCTTCTGCTGCTGCATCAGCAGCAGAAGATGACGTGCTGTTTTGA
GCAACAGGCGAAGAAGAAAGCAAAGGCCTCAATAATGGGCTTGCCCTTCT
TTGGTTGGGCCGACGAAGAAACCCTGCGCCCCCCAGTTGGCGCCCACTGC
TACCTCTAGCCCCAATGTTCCTCGGCGTCGTGGCAGCTCCTCCAGATTGT
GCCTGACCGCCCCAGCCTGTCCTTGAATTCCTCTGATTTCTGCCCCTGCT
TGTAAACCGAAGGGAGCCCCAGCCTGCCTGTGCCACCGGCCCTGGAACAT
CCCACGCCGGATGACTGCTGTTGCATACGAAGTACCCCGAAAACTGTCCT
TGCCGAAGCCCTATCCCCCTCCCCCTAGCCCCCACCTCTTCTCTGCAGCA
AGCCGTTGCCGCGCTCTAGTCGACCCCAATTACAAAACACAGGTGCACGG
TATTGCATGGCTGCCAGTGCTCATGAGCGCAAACATGCTGGCTGGGATAT
TCCCTCCCCTGAGCGTTATGTTGGCATCTCACCCTAGTCAACCCAACCCC
CCAGCGCGTATTTGCGCTTCGCAGGCATTGCCAGCCACCCAAACACCGCT
CCCGTGCCCTATAATGTGGGTAGCAGTGTAGCCCGCGGCCATCGGCCCAT
AGACCGGGGCCTCTATTCTCATTCTAGTATGACTTGATTTTTACTACTAA
TATTCTAAAAAGTAATATATTATATATAGAGAGTTAAATTTAAACAAAAC
AACCTACGCCTTGCATCTATGCAGATGTCCCTATTGTAATATACCAAAAC
CTACACATGAAATCCCAAAACCCAAATCAATACAGAACATCAAATACAGC
ACACCCCACTATCTCTGGAAGAGAGTGGCAATCCCTCGCCATCCTCGGAC
CCCGAGCTCCTCCACCTCTTCCTGGAGCCCCTGGTCCGCAGATCCACCGC
TTTGATGAGCGCGAACTGCACGCGGACACGCACCCAGTTGGACCGTTGAG
AGAGGCTTATGCCACTTTGCCGAGAGCCGAGCAGCAATGCGCCTGAGGAA
GGCCTGCATGGACTGGTGGGCAATACCCTCCACAGTCACTATCAAGGGAC
AGAAAGTAGCACGGCGCTCTTCCGCAGCAGCCTTGTACCTCTTCACCTTT
TCCCGGGCAGAGGTATTGAGGGCATTCTGGTAAGAGATGTGTTGGGATGC
ACGTCCAGGGCTGCCAGCATGTATAATGCGGGTATCAAAAAGACAGTCCC
TATCAGGTTCCCACACACCCCTCACCACAAAATCCGCCCTCAAGCCATTG
CTACCTCCATCCCTGGCCCGCTGCGACTCCTATATATATATATATATATA
TATATATATATATATATATATATATATATATATTACTCTCAACGGTCACC
AACTGGGTGCGTGTCCGCTTGCAGTTCGCGCTCATCAAAGCGGTGGATCT
GCGGACCAGGGGCTCCAGGAAGAGGTGGAGGAGCTCGGGGTTCGAGGATG
GCGAGGGATTGCCACTCTTCCAGAGATAGTGGGGTGTGCTGTATTTGATG
TTCTGTATTGATTTGGGTTTTGGGATTTCATGTGTAGGTTTTGGTATATT
ACCACAGGGACATCTGCATAGATGCAAGGCGTAGGTTGTTTTGTTTAAAT
TTAACTCTCTCTCTCTATATATATATGTATATATCATATCAAGCACCAAC
ACCCGCAGCACCCTTTCCGCCAGGCGGAAGGCGACGACGCGGGCCTGACG
GCGACGGAGCTGGCCGGCAACATGCAGACCTTCTTCCTGGCGGGCATGGA
GACCACGGGTGCCACGCTCGCCTTCGCCCTCTGGGAGCTGGCCCGGCGGC
CCGCCCTCCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig98:1512006..1518866-

>mRNA_H-akashiwo_Contig98.32.1 ID=mRNA_H-akashiwo_Contig98.32.1|Name=mRNA_H-akashiwo_Contig98.32.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig98:1512006..1518866- (Heterosigma akashiwo CCMP452)
ATGGGGGACGAGGCGGAAGGCGACGACGCGGGCCTGACGGCGACGGAGCT
GGCCGGCAACATGCAGACCTTCTTCCTGGCGGGCATGGAGACCACGGGTG
CCACGCTCGCCTTCGCCCTCTGGGAGCTGGCCCGGCGGCCCGCCCTCCAG
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