mRNA_H-akashiwo_Contig978.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig978.3.1
Unique NamemRNA_H-akashiwo_Contig978.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig978.3.1 vs. uniprot
Match: A0A7S3UVU0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVU0_HETAK)

HSP 1 Score: 649 bits (1673), Expect = 6.250e-233
Identity = 345/347 (99.42%), Postives = 347/347 (100.00%), Query Frame = 2 
Query:  158 MKSSVLNISPVVGCRDLKRPAKVGKEREQSSPNLKMFDLSTDLGPRLKPLSSPPQSPPSPSQSCTAFSLVYQPNEATAPNTRALSMRKLTSDPRKSNHFRNKAESESRIFNHSHSDTSLFEATGIPGPSRSSQTAAPLDRMTRQRQNTDPTRADYFFRANIARRRLRHPLQDVSARANLEKLNRAPQSKDISSLLTPGLMLDPSSIPAHCLELVSPVRTGRSTMEPTLNFAETADFVKRKESFATYVSRVRAAKARPPVTGTNAKPGLGAPKPKLNSVKMGLGLADFIPDSAGTGMQKAKKKGQINHFKYDEEQDVEAENGNSARKASXXXXXXAGRSVTWLRAEAA 1198
            MKSSVLNISPVVGC+DLKRPAKVGKEREQSSPNLKMFDLSTDLGPRLKPLSSPPQSPPSPSQSCTAFSLVYQPNEATAPNTRALSMRKLTSDPRKSNHFRNKAESESRIFNHSHSDTSLFEATG+PGPSRSSQTAAPLDRMTRQRQNTDPTRADYFFRANIARRRLRHPLQDVSARANLEKLNRAPQSKDISSLLTPGLMLDPSSIPAHCLELVSPVRTGRSTMEPTLNFAETADFVKRKESFATYVSRVRAAKARPPVTGTNAKPGLGAPKPKLNSVKMGLGLADFIPDSAGTGMQKAKKKGQINHFKYDEEQDVEAENGNSARKASXXXXXXAGRSVTWLRAEAA
Sbjct:    1 MKSSVLNISPVVGCKDLKRPAKVGKEREQSSPNLKMFDLSTDLGPRLKPLSSPPQSPPSPSQSCTAFSLVYQPNEATAPNTRALSMRKLTSDPRKSNHFRNKAESESRIFNHSHSDTSLFEATGLPGPSRSSQTAAPLDRMTRQRQNTDPTRADYFFRANIARRRLRHPLQDVSARANLEKLNRAPQSKDISSLLTPGLMLDPSSIPAHCLELVSPVRTGRSTMEPTLNFAETADFVKRKESFATYVSRVRAAKARPPVTGTNAKPGLGAPKPKLNSVKMGLGLADFIPDSAGTGMQKAKKKGQINHFKYDEEQDVEAENGNSARKASXXXXXXAGRSVTWLRAEAA 347
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BLAST of mRNA_H-akashiwo_Contig978.3.1 vs. uniprot
Match: A0A7S3XMZ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMZ6_HETAK)

HSP 1 Score: 476 bits (1226), Expect = 1.440e-166
Identity = 247/249 (99.20%), Postives = 249/249 (100.00%), Query Frame = 2 
Query:  158 MKSSVLNISPVVGCRDLKRPAKVGKEREQSSPNLKMFDLSTDLGPRLKPLSSPPQSPPSPSQSCTAFSLVYQPNEATAPNTRALSMRKLTSDPRKSNHFRNKAESESRIFNHSHSDTSLFEATGIPGPSRSSQTAAPLDRMTRQRQNTDPTRADYFFRANIARRRLRHPLQDVSARANLEKLNRAPQSKDISSLLTPGLMLDPSSIPAHCLELVSPVRTGRSTMEPTLNFAETADFVKRKESFATYVSR 904
            MKSSVLNISPVVGC+DLKRPAKVGKEREQSSPNLKMFDLSTDLGPRLKPLSSPPQSPPSPSQSCTAFSLVYQPNEATAPNTRALSMRKLTSDPRKSNHFRNKAESESRIFNHSHSDTSLFEATG+PGPSRSSQTAAPLDRMTRQRQNTDPTRADYFFRANIARRRLRHPLQDVSARANLEKLNRAPQSKDISSLLTPGLMLDPSSIPAHCLELVSPVRTGRSTMEPTLNFAETADFVKRKESFATYVSR
Sbjct:    1 MKSSVLNISPVVGCKDLKRPAKVGKEREQSSPNLKMFDLSTDLGPRLKPLSSPPQSPPSPSQSCTAFSLVYQPNEATAPNTRALSMRKLTSDPRKSNHFRNKAESESRIFNHSHSDTSLFEATGLPGPSRSSQTAAPLDRMTRQRQNTDPTRADYFFRANIARRRLRHPLQDVSARANLEKLNRAPQSKDISSLLTPGLMLDPSSIPAHCLELVSPVRTGRSTMEPTLNFAETADFVKRKESFATYVSR 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig978.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3UVU0_HETAK6.250e-23399.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XMZ6_HETAK1.440e-16699.20Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig978contigH-akashiwo_Contig978:138582..141576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1199
Hectar predicted targeting categoryother localisation
Exons4
Cds size1041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.0702434-UTR-H-akashiwo_Contig978:138581..1387381681388065.0702434-UTR-H-akashiwo_Contig978:138581..138738Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig978 138582..138738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.0843322-CDS-H-akashiwo_Contig978:138738..1394861681388065.0843322-CDS-H-akashiwo_Contig978:138738..139486Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig978 138739..139486 +
1681388065.0957935-CDS-H-akashiwo_Contig978:139804..1399121681388065.0957935-CDS-H-akashiwo_Contig978:139804..139912Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig978 139805..139912 +
1681388065.1067924-CDS-H-akashiwo_Contig978:140220..1403521681388065.1067924-CDS-H-akashiwo_Contig978:140220..140352Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig978 140221..140352 +
1681388065.1169007-CDS-H-akashiwo_Contig978:141523..1415761681388065.1169007-CDS-H-akashiwo_Contig978:141523..141576Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig978 141524..141576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig978.3.1prot_H-akashiwo_Contig978.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig978 138739..141576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig978.3.1

>prot_H-akashiwo_Contig978.3.1 ID=prot_H-akashiwo_Contig978.3.1|Name=mRNA_H-akashiwo_Contig978.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=347bp
MKSSVLNISPVVGCRDLKRPAKVGKEREQSSPNLKMFDLSTDLGPRLKPL
SSPPQSPPSPSQSCTAFSLVYQPNEATAPNTRALSMRKLTSDPRKSNHFR
NKAESESRIFNHSHSDTSLFEATGIPGPSRSSQTAAPLDRMTRQRQNTDP
TRADYFFRANIARRRLRHPLQDVSARANLEKLNRAPQSKDISSLLTPGLM
LDPSSIPAHCLELVSPVRTGRSTMEPTLNFAETADFVKRKESFATYVSRV
RAAKARPPVTGTNAKPGLGAPKPKLNSVKMGLGLADFIPDSAGTGMQKAK
KKGQINHFKYDEEQDVEAENGNSARKASAGAGGGAGRSVTWLRAEAA
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mRNA from alignment at H-akashiwo_Contig978:138582..141576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig978.3.1 ID=mRNA_H-akashiwo_Contig978.3.1|Name=mRNA_H-akashiwo_Contig978.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2995bp|location=Sequence derived from alignment at H-akashiwo_Contig978:138582..141576+ (Heterosigma akashiwo CCMP452)
GTGAGAGAGCCTTGAGGGGTGGGGTGGAGAGGAGGAGCCACCAGAAATGG
TTGGCAGTGGTAGCTATATATATCCTTGTGCAAGCTTGAGGGCCCGGGAC
TTGTGTCTCTTTCAATCTGTGAAGGTGAATTTTCCCGAAGGTGACTTCTG
ACAAATCATGAAAAGCTCGGTACTGAATATTTCTCCTGTGGTGGGTTGCA
GGGATTTGAAGAGGCCGGCAAAAGTGGGTAAAGAGCGTGAGCAGTCGTCA
CCAAATCTCAAAATGTTTGACTTGAGTACAGATCTTGGCCCTCGGCTGAA
GCCTCTGTCGAGTCCTCCTCAAAGCCCACCGTCACCAAGCCAATCCTGCA
CTGCCTTTTCCCTGGTCTACCAGCCTAATGAGGCCACAGCTCCAAATACA
AGGGCGCTTTCCATGCGGAAGTTAACATCGGATCCTCGGAAATCAAACCA
CTTCAGGAACAAGGCTGAATCTGAATCCCGAATCTTCAATCACAGCCACT
CAGATACTTCATTGTTTGAAGCCACAGGCATTCCTGGCCCAAGCCGCTCC
TCTCAGACTGCTGCCCCTTTAGATAGAATGACAAGGCAGCGCCAGAACAC
CGACCCAACCCGTGCTGATTACTTTTTCAGGGCTAATATAGCCAGGCGGC
GGCTCAGGCACCCTCTTCAAGATGTCTCTGCGAGAGCTAACCTAGAAAAA
CTCAACAGAGCTCCTCAGAGCAAAGATATTAGCTCACTGCTTACTCCTGG
GCTGATGCTGGACCCAAGCTCTATACCTGCACATTGCCTAGAGCTTGTTT
CGCCAGTCAGAACAGGGCGATCAACAATGGAACCAACCCTGAACTTTGCT
GAAACTGCAGATTTTGTCAAACGAAAAGAAAGCTTTGCAACCTATGTCAG
TAGAGGTATCACACCCACTTCGTGCACCTGTTTTCCCCCCTCACTAAGTG
CTTGGTGCTGCCGCACTTTTGTTGAATGTTTGTCTGCCGTAACAGCTTCA
AAGTGTGCCTTGCTTTTTATGTGAGGTGCTCTCATTTCTCAGCAGCATTG
CTGCTGATGCGCGCGCCAGAGATTCTGATGCATGGTCATTTTTGAACTGC
AAAGGCAATTCAGGCTTCGCCTCACCCAGATCAAAAACAGCGTCCTCGCA
CACCGGAACAACAAGCCATCTCTCAATTTTCTGAATGACATGTGCCGCTC
AGTCCCCCCCCCCCCCTCTCCAGTCCGAGCGGCCAAGGCGCGCCCGCCGG
TGACCGGCACCAACGCCAAGCCCGGCCTCGGGGCGCCGAAGCCCAAGCTC
AACAGCGTCAAGATGGGTCTGGGCCTGGCAGGTGTGCGGGGGGGTGCCGC
TGCTCTCACCTGGAGGGGGGCAGGGAGGCGGGACCTTGGGGAGGAAGGGG
GGGGGGGCAAAGTGGTGGGGCGTGTTGCGTTTCATTTAAGGCAAGATCTG
CAGCGTCGTTGGGGTGGGGGACGATTTGAAGCGGGGGCTGAGAAAGGTTT
TCCCAGCACACAACATGCCATGCATCTTTTATTCATCAGTTATTGTTGTG
AACCTGTTTTATTTTTTATGTGTGCGTCGTTACATGTTATATATGCTGAA
TTCGCTGCATCGGCCTTGCTTGTTCTTATCAACTTGCAGACTTCATACCA
GATTCAGCAGGTACTGGGATGCAAAAGGCAAAGAAGAAGGGACAAATTAA
TCACTTCAAGTATGATGAAGAGCAAGATGTAGAAGCTGAAAATGGCAACA
GTGCACGAAAAGCATCAGCAGGTATGGATGCTGCTTGTTGTCTTTTCTTC
CTCAAGCCTTGGCCTGTATGTGTGCGCGCGCCATTGTTAAAATCTGGTTC
TTGCACCATATTGAAATTTGTATTCTACAAGTACAGGGTATACATTCCAT
TCAACTTCAAGAATATTGAAAAGAAAGTGATCACTGATGGTACGGAACAA
TTAATTAATCTTCTAGCAAATGATACGCTTCTCCAGCTCCCGACGTTTCG
ACATGAAGTCATGCCTTCTTCACAGAGTCACCAAGTTGGCCAAACTCCAA
CTAGGTCCCATCACGGTAATTTCAAGAATATATGTGTACAACTTTAAGAA
TAGTGAGTTAAAATTTCCAAAATTTGGTACTATAAGAATATCCTATAGGG
TATTCAGAGAGCATCATATTCTTAAGTCGCCCCCTCCTCCTTTTGGAACC
GGGATATATCCTCGCGAACGACTGCACTTGCGCGCTTAATAACTCCCGAA
ATACCACCAACAGATCCTGGTACGGGCGATGATAAAGACGTATTCAGTTC
ACCGTTTCCGTTTATTATCGAAGAATAATTGCTTCCTCAGGTTATTTTTT
ATCTCATCTTATGCGATTAGTCCCGGAAAACATGCCGAATAAGTATTTTC
TCAATCCACCGTATATCCCGCTTTCGAGATGAAATCTTCTGGAATCATCG
TGCTTTTGCATTTCAAGTGATCTTGGCCACATTTTTCAGCTTTAGAAAAA
GAAACATGTGCTGACGACGACCAACATATATTACAATCGCACTATAGTCG
TGTCGTCTGTGAATCCATTTTTCTTCTTCTTCTCCCTCTTCTTCTTCTTC
TCCCTAAGTCTGTGAGAGTTAAGAATATGTACAATGACAGTGAAGTGTGA
CACCGTGTATTGGGGGGTGGCATTGTATAATGAATAACATAGACAAAAAA
AAAAAAAAAAAAAAAAAAAATCCATCGCGAAAATGACCGAATCTTAAGTT
TCCCCACCTCTAAATCGCATCATTACCTTTCTGTTTAAGTTTTTTAAAAC
CCTTTGCCAACCGGACACCGCACGGCGATGTCCCCCCGTCCCCCCTCCCC
ATCCCGCTACCGCCCCGCCCCGCGCTGTGTCCCCCCATCACCCCTCCCCA
TCCCGCTACCGCGCCCCGCCGTGCGCTGTGGGGCGGCGCCAGGGGCCGGG
GGGGGCGCGGGGCGCAGCGTCACGTGGCTGCGGGCCGAGGCAGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig978:138582..141576+

>mRNA_H-akashiwo_Contig978.3.1 ID=mRNA_H-akashiwo_Contig978.3.1|Name=mRNA_H-akashiwo_Contig978.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1041bp|location=Sequence derived from alignment at H-akashiwo_Contig978:138582..141576+ (Heterosigma akashiwo CCMP452)
ATGAAAAGCTCGGTACTGAATATTTCTCCTGTGGTGGGTTGCAGGGATTT
GAAGAGGCCGGCAAAAGTGGGTAAAGAGCGTGAGCAGTCGTCACCAAATC
TCAAAATGTTTGACTTGAGTACAGATCTTGGCCCTCGGCTGAAGCCTCTG
TCGAGTCCTCCTCAAAGCCCACCGTCACCAAGCCAATCCTGCACTGCCTT
TTCCCTGGTCTACCAGCCTAATGAGGCCACAGCTCCAAATACAAGGGCGC
TTTCCATGCGGAAGTTAACATCGGATCCTCGGAAATCAAACCACTTCAGG
AACAAGGCTGAATCTGAATCCCGAATCTTCAATCACAGCCACTCAGATAC
TTCATTGTTTGAAGCCACAGGCATTCCTGGCCCAAGCCGCTCCTCTCAGA
CTGCTGCCCCTTTAGATAGAATGACAAGGCAGCGCCAGAACACCGACCCA
ACCCGTGCTGATTACTTTTTCAGGGCTAATATAGCCAGGCGGCGGCTCAG
GCACCCTCTTCAAGATGTCTCTGCGAGAGCTAACCTAGAAAAACTCAACA
GAGCTCCTCAGAGCAAAGATATTAGCTCACTGCTTACTCCTGGGCTGATG
CTGGACCCAAGCTCTATACCTGCACATTGCCTAGAGCTTGTTTCGCCAGT
CAGAACAGGGCGATCAACAATGGAACCAACCCTGAACTTTGCTGAAACTG
CAGATTTTGTCAAACGAAAAGAAAGCTTTGCAACCTATGTCAGTAGAGTC
CGAGCGGCCAAGGCGCGCCCGCCGGTGACCGGCACCAACGCCAAGCCCGG
CCTCGGGGCGCCGAAGCCCAAGCTCAACAGCGTCAAGATGGGTCTGGGCC
TGGCAGACTTCATACCAGATTCAGCAGGTACTGGGATGCAAAAGGCAAAG
AAGAAGGGACAAATTAATCACTTCAAGTATGATGAAGAGCAAGATGTAGA
AGCTGAAAATGGCAACAGTGCACGAAAAGCATCAGCAGGGGCCGGGGGGG
GCGCGGGGCGCAGCGTCACGTGGCTGCGGGCCGAGGCAGCC
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