mRNA_H-akashiwo_Contig97.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig97.8.1
Unique NamemRNA_H-akashiwo_Contig97.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig97.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig97contigH-akashiwo_Contig97:821886..822954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size500
Hectar predicted targeting categoryother localisation
Exons4
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388062.558049-CDS-H-akashiwo_Contig97:821886..8219401681388062.558049-CDS-H-akashiwo_Contig97:821886..821940Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig97 821887..821940 -
1681388062.5698931-CDS-H-akashiwo_Contig97:822074..8222661681388062.5698931-CDS-H-akashiwo_Contig97:822074..822266Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig97 822075..822266 -
1681388062.579944-CDS-H-akashiwo_Contig97:822493..8225851681388062.579944-CDS-H-akashiwo_Contig97:822493..822585Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig97 822494..822585 -
1681388062.5909266-CDS-H-akashiwo_Contig97:822794..8229541681388062.5909266-CDS-H-akashiwo_Contig97:822794..822954Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig97 822795..822954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig97.8.1prot_H-akashiwo_Contig97.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig97 821887..822954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig97.8.1

>prot_H-akashiwo_Contig97.8.1 ID=prot_H-akashiwo_Contig97.8.1|Name=mRNA_H-akashiwo_Contig97.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=166bp
SLLLCCWKVEGTTRKMEMENMDKLLGDSIRMPRNIMHQRINTSGWFDYFA
TSEGIVALTIGSIIALIIFRLVGPTDSKTLEEQQEMDDLWKRHTNRLPGV
PGQVKDRTRTSKQQAIMASKSQELLPPPPELTREVIWVQKKFLWRVVKIR
RKPKEEDRGEPNAAAA
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mRNA from alignment at H-akashiwo_Contig97:821886..822954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig97.8.1 ID=mRNA_H-akashiwo_Contig97.8.1|Name=mRNA_H-akashiwo_Contig97.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1069bp|location=Sequence derived from alignment at H-akashiwo_Contig97:821886..822954- (Heterosigma akashiwo CCMP452)
TCGCTGCTGCTCTGCTGCTGGAAGGTGGAAGGCACAACCAGAAAGATGGA
GATGGAAAATATGGACAAATTGCTGGGAGATTCTATTCGGATGCCGAGGA
ATATCATGCATCAGCGAATCAATACCAGCGGCTGGTTTGACTATTTCGCC
ACATCAGAAGGTGACGAATAGAAGTAGAAAGTCTGCTAGAAAACAATCTG
AAAGGCAACACGTTGAACTAAGGCTATCACTACCACCATCACCACCACCA
CCACCTCGGAAGCAGAACAAACGAAAAAAGTGATTACAACATTATCGACT
CAAATAAAATGCGATAGCTACATTAGTTTCATCCTGAAAATGACTTTTGT
TTCTATGCTTTGGCACCAGGCATTGTTGCTCTGACAATAGGGAGCATCAT
TGCTTTGATCATTTTCCGGCTCGTTGGGCCCACAGACTCAAAAACCCTGG
AGGAGCAGCAGGTATTTACTCTCCTGTCCCTGTGCAGCTGGGCTGAATCT
GTATCTGCATGAATTTCTCTGTAAAGTTGTGCCACTCTCCGGGGCATTTT
TTTTTAGGTTTGAAATACTGTTTTTCCAACACCGTTAATGAGTGCCATTT
TTTTTTTTTTTTTCCTTCAGCAGTATTCCTATCAGCATGCTTAATCAACC
TGATGACTTTCTAACTCATGGAATGGAATGCTCCATAGGAGATGGATGAC
CTGTGGAAGAGGCATACAAACCGTTTGCCTGGTGTTCCAGGTCAAGTCAA
AGATCGTACACGAACATCAAAACAACAAGCAATCATGGCGAGCAAAAGCC
AAGAGCTGCTTCCACCTCCACCCGAGCTCACAAGGGAAGTGATCTGGGTC
CAAAAGAAGTTTCTGTGGAGGGTTGTGAAGGCAAGCCTTGACCTTTCATC
CTCTCTCACCTCCCCCCTTCCTTCATATAGCCCTCTCGGACGGTGTCGGC
GGCCCAAATTTTGACTTTTAGCCCTATCCTTCCCAACACAGAGCCACCCT
CCCCGGCGAGGCAGATCCGGCGCAAACCGAAGGAGGAGGACAGGGGGGAG
CCCAACGCCGCGGCGGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig97:821886..822954-

>mRNA_H-akashiwo_Contig97.8.1 ID=mRNA_H-akashiwo_Contig97.8.1|Name=mRNA_H-akashiwo_Contig97.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=498bp|location=Sequence derived from alignment at H-akashiwo_Contig97:821886..822954- (Heterosigma akashiwo CCMP452)
TCGCTGCTGCTCTGCTGCTGGAAGGTGGAAGGCACAACCAGAAAGATGGA
GATGGAAAATATGGACAAATTGCTGGGAGATTCTATTCGGATGCCGAGGA
ATATCATGCATCAGCGAATCAATACCAGCGGCTGGTTTGACTATTTCGCC
ACATCAGAAGGCATTGTTGCTCTGACAATAGGGAGCATCATTGCTTTGAT
CATTTTCCGGCTCGTTGGGCCCACAGACTCAAAAACCCTGGAGGAGCAGC
AGGAGATGGATGACCTGTGGAAGAGGCATACAAACCGTTTGCCTGGTGTT
CCAGGTCAAGTCAAAGATCGTACACGAACATCAAAACAACAAGCAATCAT
GGCGAGCAAAAGCCAAGAGCTGCTTCCACCTCCACCCGAGCTCACAAGGG
AAGTGATCTGGGTCCAAAAGAAGTTTCTGTGGAGGGTTGTGAAGATCCGG
CGCAAACCGAAGGAGGAGGACAGGGGGGAGCCCAACGCCGCGGCGGCG
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