mRNA_H-akashiwo_Contig966.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig966.6.1
Unique NamemRNA_H-akashiwo_Contig966.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig966.6.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.060e-9
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 VSILSGSIWAALQEIIERPRALPLLLGTALPHVAVYFTNVIIFKILVGLPLELVRPW 171
            V++ SGSI +ALQEI++ P ++  +LG   P VAVYF +VI+ KI VGLP EL+R W
Sbjct:  693 VTVASGSIISALQEILDDPASVLNILGETFPAVAVYFLDVIVVKIFVGLPFELLRGW 749
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BLAST of mRNA_H-akashiwo_Contig966.6.1 vs. uniprot
Match: A0A7S4W2T6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W2T6_9DINO)

HSP 1 Score: 52.4 bits (124), Expect = 2.120e-6
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 VSILSGSIWAALQEIIERPRALPLLLGTALPHVAVYFTNVIIFKILVGLPLELVRPW 171
            V++++GSIW  LQ I++ P +   LL ++LP VAVYF   ++ +    LPL L+RPW
Sbjct:  496 VTMITGSIWIELQNILQSPASFLTLLSSSLPKVAVYFVTFVLTRTGFSLPLLLLRPW 552
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BLAST of mRNA_H-akashiwo_Contig966.6.1 vs. uniprot
Match: A0A812WXL8_SYMPI (CSC1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812WXL8_SYMPI)

HSP 1 Score: 50.1 bits (118), Expect = 1.380e-5
Identity = 24/56 (42.86%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 VSILSGSIWAALQEIIERPRALPLLLGTALPHVAVYFTNVIIFKILVGLPLELVRP 168
            V++LSGS+W +L +I+++P  +  +L  ALP   VYF + ++ +  VGLPL L+RP
Sbjct:  218 VTVLSGSLWDSLTQILDQPSQVVEILARALPKANVYFLSFVLARACVGLPLLLLRP 273
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BLAST of mRNA_H-akashiwo_Contig966.6.1 vs. uniprot
Match: A0A7S3NNL1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNL1_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.570e-5
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 VSILSGSIWAALQEIIERPRALPLLLGTALPHVAVYFTNVIIFKILVGLPLELVR--PW 171
            +++++GSIW AL+ I+  P +    +G +LP V+VYF  +II + LV +P E  R  PW
Sbjct:  618 LTVVAGSIWDALKNIVNNPSSFFKFVGKSLPTVSVYFVEIIIIRALVSMPWEFSRILPW 676
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig966.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGF9_ECTSI4.060e-954.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4W2T6_9DINO2.120e-643.86Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A812WXL8_SYMPI1.380e-542.86CSC1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A7S3NNL1_9STRA3.570e-540.68Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig966contigH-akashiwo_Contig966:139892..145788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGF9
PFAMsPHM7_cyt,RSN1_7TM,RSN1_TM
Model size174
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Evalue6.66e-10
EggNOG OGsCOG5594@1|root,KOG1134@2759|Eukaryota
Descriptionion transport
Cds size171
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388061.1620753-CDS-H-akashiwo_Contig966:139893..1399321681388061.1620753-CDS-H-akashiwo_Contig966:139893..139932Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig966 139894..139932 -
1681388061.1739347-CDS-H-akashiwo_Contig966:145462..1455551681388061.1739347-CDS-H-akashiwo_Contig966:145462..145555Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig966 145463..145555 -
1681388061.1848035-CDS-H-akashiwo_Contig966:145749..1457881681388061.1848035-CDS-H-akashiwo_Contig966:145749..145788Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig966 145750..145788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig966.6.1prot_H-akashiwo_Contig966.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig966 139894..145788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig966.6.1

>prot_H-akashiwo_Contig966.6.1 ID=prot_H-akashiwo_Contig966.6.1|Name=mRNA_H-akashiwo_Contig966.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=57bp
VSILSGSIWAALQEIIERPRALPLLLGTALPHVAVYFTNVIIFKILVGLP
LELVRPW
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mRNA from alignment at H-akashiwo_Contig966:139892..145788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig966.6.1 ID=mRNA_H-akashiwo_Contig966.6.1|Name=mRNA_H-akashiwo_Contig966.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5897bp|location=Sequence derived from alignment at H-akashiwo_Contig966:139892..145788- (Heterosigma akashiwo CCMP452)
GTCTCAATCCTGTCTGGTTCAATTTGGGCTGCCCTCCAGGTTTGTTACTT
GAAAAAGGACAACAGCCTTGCCACAGAGAACTGAGTAATAACACCCATAG
CAAAATGATATCATTTCCAGCTCACTTTTGCACACTTGTTTATTTGCTTC
CAACAACCATCTGGCTTGTTAATCATTCTTGTATGCGTGTATTCCTTGGC
TTGTTTTACACAAAATGTATTTTATATCCACAGGAGATAATTGAACGCCC
AAGAGCCCTGCCCCTGCTACTAGGCACCGCTTTACCCCATGTTGCTGTTT
ACTTTACAAATGTGATCATCTTCAAGGTGTGTGCCTTTGTAAAAAAGTAT
TAATTGAAGCAACTGCACACTACAACAATGGAAAGGATATGTAATAATTT
ATATCTCTGAACCCGACGATGTTCGATTATATTTGATATAGCTGATTTAT
AGACCACCAGCAGGACACTAGCCCAGTTTAATACTTCATCACGGACCATC
TCCCAGTTAAATAAGAGGCTTCTTAACAGTTATGCCACTTTATGGTGAGT
TAGACTTTCCTTTTGTTTTGAAATTCTCGATTAAAAAAAAAGCATTGCCA
AGAAATACACCCAGCAGGTGCACTGATGTGGAAGCAAAAATAGTTTTTGG
CCAAGTTTGCCTTGTGGTGAAACGATGATGATTCATCTGTGAGAGATGCC
ACCCCAATACCAGCAAGCCGTTCAAGATGCACAGATAATGGGGTGGAGTC
CCTGAAACTAGTATATGTGTGTATCATAGAGTTTGCTGGAGCTGTGTATT
ATAGCCATTTTTCTTTTCAAATAGCACTGAAACTACCGTCTTGCTGCTAT
ATATATGTAGAGTGATGATTAAAGTGCTTGAACTTTGGAAAACAACGTCA
GAATTTCAAGTCCACCAGATGCAAAATTAGGAGAGCCACCAAAACCGAGC
AGTTGAATAGTGAGTTGCTTGTTGGTGTCTCCTAAACACAGCTTGACTTC
ATTGAAATGGTTTGCTCCCAGTGAGCCAAGACCAGATGTGGTACTTAAGT
AATATTTCTTACATGTCTACTTACTTGACAAATGCACACTGTCAAAATAC
ACAGAAGGTATAGAACTGCAAACCCTGTGGTATATCATCTTTTCTTATAC
TCCTAGGTACTACACAATCGAATGAGAGCTTCTCGCGATCATTCTCGTTA
TCAATTCAGAGTTTCGTGCTGTTTTGTGTTTCGGTTTGTGAATTCTTGTC
TCGATGAACATGGTGGATTTCTCGTTCTTTTGGGTTGATTGTCACCTCTG
GTGGAGATATGGTGGAGGCGTGATAATGACTCAGGGTATAGTGGGAAAAC
CCGGTCAGTTCCGTTTTATATTTGAATTTGGACTACCTATACTCTTTGGC
TACCTGGATCTCTGATTGGCTATAATGCTGGTTTTATTCAGGACTATTTG
GTTTATTTAAAACCAATGGGCAATTTGTGTTAGGAAATATATCCAATGAG
GATCTGGAGAGTACCACTGGAATTCTACTATTGGTTGTTATTAGAAGTTT
ATTAGTTGTTATTCTGGAGTCACTCAAAGACTGCTTTATGCTGCTGGTGC
TCTGCTGGTTAATTAGTGGTGGTACATTGGTAGTATAGTACGACCTGTCT
TCTTCTCCTTCCTGGTGTGCTCCGCCCAGGAGATGTAGGATAGAATTTGA
AATCATTGTAAATTGTTTGTCAAATTGTCTGCTCTGCATACAAAGCAAGA
AGAGGTGAAAGCTTCACTTGTGAGTTTGGTTATGGGCCCACAAGAGTCCT
CTGCTTGTAACTGAGTGCCGCTTACCCAGCGACATTGGTTTCTAGGCTTG
TGTGACACGGAGGAGCTTTTGATTCAAGTACGGCAATCTAAACCTGCTTG
TGGATATCAAAGTTCTGTTGCACGACGACCCTTCTCCCCAGGGTTTCGCG
TTGATACTATTTGTGCAGGTAGTGCTAGGAAACCTGCCTGAGCACACACT
TGGAGATGCGCGACAAGATGAGCGAAGTATTAGGCGACAAGGACTTGATA
GCTCGACTCAGGTCGCAGCGATTCGAACTGAACAAACTGAGTGTCATATA
GAATACCTGGAATCCTACTTAAGCGCTAGAGGTGTGGGTCACTTATATGC
GATTAAGAAAGTACGGCCTATATCAGAAAGGATGGTTCACCCGTGACTTG
TCAAGCTGACTGGTTGATTGACCAAGATAAATACTCTGATCGCGTTCAGT
ATGAAAAAGAGAAGAGTCTCATTGTCAGAGCTCTTCAATGTGCCATGGGA
TCTGAATTCAAGCAGGCTTTCCCCCTGGAAGTGCGCGCTGATGGAAGTAT
CCTCAATCCTGTGAAGAATATGTTACCGCATCAGATCTGGGATAGATGCA
GATCAAGGCTTGAGGAACAACACTTTGATGGTGGATCAAATCTCAAAAAT
GATCTTCATGCTCTGGAATATGAGGTCGGTGATGACATGGCAAAGTTTCA
AGAAGAATTCCTGAACCTAGCTAACCAGATTTGCTACGAAGATCCGAATG
ATCTGAACGACTCGGAATCAATCCCTATTCTGCTCGACAACATCAAAGGC
TGGCGCAAGCCCGATCATCCGTATCATCATCCGTGCCAACTGATCAGTGA
TGACTTCGACAAGCAAAAGCGAGCTCTTCGTCTCAATCCTGCTGGACCAA
GGCCACTGGCTCTCATCAAGGCCATGGATCGCCTCTGGCACCACAATGAG
TTGAAGAAACTGGAGCCAAAAGATGATGAGGAGACAGCACTCACTGCACG
TGCTGCTGCGATCAATCTACTTGAAGGCATGAACTATCGTGTGGTGGAGC
CCGAACACTTTGGACTGGCGGCCAACCCCACTTGTGGCCATACCAACTCT
CTTTGGGAACGTGGAGTCCAACTCGACCTCGCTCGTGCACAACACCATGC
CCCTAATCGTGGTGGTGGTGGCTGGCCTTCTTCTTCCAACAACTACAAAA
CTGAGGCTGCCAGCAGACCCCGATCACTCCTTGGTTAAGGGTTGACCGCG
CGGGGCCGAGGGTTGACCGCGCCGTGCGGGGCCGAGGGTTGACCGCGGCT
TGCGGGGCCGAGGTATGACCACGCCGTGCGAGGCCGAGGGTTGACCGCGC
CGTGCGGGGCCGAGGGTTGACCGACCGGGGTACCGGGGCCGAGGGTTGAC
CGCGCCGTGCGGGGCCGAGGGTTGACCGCGCCTTGCGGGGCCGAGGGTTG
ACCTCGCCGTGCGGGGCCGAGGGTTGACCGACCGGGGCCAAGATTTGACC
GTTCGGGGCCGAGGATTGGCGATTGACCCCGCGGTCCAACCTGCGGGGCC
GTAATTCCTGCCTGGGGGGCGGCCATGCTGCTGTTCCGCCGTGTGACCCA
CGTCGTTAATAATGAAATTCTTACTCATGGAAAAAACAAGTCAATTTTTA
GAAAAGAGATGTCCTCTTGATTGGATAGACGTTTTATTGATTGCCACGTT
GTTCAGCTTCTTTTATTTTTATCATGATGATCATTAGAAAAATCCTGGAA
ATTTTCGAGGACAAGCTGAAATACCCACATTCTTCTTCTTCAAACAATAC
TGGGTCGCTACTTCTCATGTTTGATGGTTGCTTTTCGGCACGATGATCGC
GGAGGGAAAAACGATTGCGTAAGCACAGTCTAAAATCACACCAAGGAGTG
ATAACAACTGTGGTGGTGGTGGTGGAAGACAATATACGTCGATCTCCCAT
TCAGGAGACAACACAATGTCTGTCACAAATGCGGGAGTTCTGATCACACT
GAATGGCGAAACTGTCCTCTTCTTCTACGTAACTCTTCTGGTGGAGGCTA
TTCAAGAAATGGCGGGAACAACGGCGGCAGAAACTTCTCCTCCTCCAACA
ACAACCTCCAAGAAGTAGTGAGACGGCAGCAGCAACAAATCGATCAGCTT
ATTCAAATGATGCAAGGCAATCACAGAGGAAGCGCTAGTGGGATGATGGC
CGCTGGAGCTCCTGATGAACACCTTCCCGTACCAAGCGCAATATACGGTA
CTACCTACAGATTGGATCCCAACAATCAACCTACCTTCGTGCCTGGTGAA
GAAAAGGCTGGTGTAGAGCCACGGGCTGCTTGGGGCGATGACAGTGAAGA
TGAAGTATAGTTTGAATCATTTACTGTGAGTGTCTGGACAAAATGGAAAA
CTCGGTACAGTGAAATGAGGGGTATGCTTGGAAACTACCTTTATGATTGG
AACTGGTGCTGAGCGAAATGGCAAGCTATATTTAGTGATCTACAAGGTGG
TGATCTACTTGTGGTGAATCACGATCCCCTGATTCGATAAGGTGGAGCAT
TCGAATGAGAGCTTCTCGCGGTCATTCTCGTTATCGATTCAGAGTTTCGT
GCTGTTTTGTGTTTCGGTTTGTGAATTCTTGTCTCGATGAACATGGTGGA
TTTCTCGTTCTTTTGGGTTGATTGTGACCTCTGGTGGAGATATGGTGGAG
GCGTGATAATGACTCAGGGTATAGTGGGAAAACCCGGTCAGTTCCGTTTT
ATATTTGAATTTGGACTACCTATACTCTTTGGCTACCTGGATCTCTGATT
GGCTATAATGCTGGTTTTATTCAGGACTATTTGGTTTATTTAAAACCAAT
GGGCAATTTGTGTTAGGAAATATATCCAATGAGAATCTGGAGAGTACCAC
TGGAATTCTACTATTGGTTTTTATTAGAAGTTTATTAGTTGTTATTCTGG
AGTCACTCAAAGACTGCTTTATGCTGCTGGTGCTCTGCTGGTTAATTAGT
GGTGGTACATTGGTAGTATAGTACGACCTGTCTTCTTCTCCTTCCTGGTG
TGCTCCGCCCAGGAGATGTAGGATAGAATTTGAAATCATTGTAAATTGTT
TGTCAAATTGTCTGCTCTGCATACAAAGCAAGAAGAGGTGAAAGCTTCAC
TTGTGAGTTTGCTACATAGCATATTTTGAGAAGGAAGCAAAATGATGAAT
TTAGAATTGTGTGCTGTAGTAGATCTTCATATATATTCATATATTGAGTT
TGATGGTTAAACTTGTAAGTAAAAAAAAAAAAAGATAAATCTGCGCTATA
CAGCTGTTTCACCCTCCCTAGAGATTGTCAACAATACATCGCTTATTTGT
CAATCAATCACTGCACCTTTTCAAGGGGAGAACAACTTAATGTTTTACTG
CAAGCAGTCGTCGCCTGATGGTGTGGTGCTGTTTGTTGTTACAGCAGAAA
AATGAGCTGTTAGTTGTTACAGTTGCAGAAAAAGGAGGGTTTTGTTTCGG
TTCTTTCTTTTTGGTGCTGTTTCCGGCAATTCCTGCAGTTGAATTGCGAG
ATGGACTTTAAGTTTGATATTTTGTCAATACATTTTTGTGTGTGATCATC
TGCTGAAGGCCTTTGTATTTTGTTTCATTTTTGTTCTGAGGAATACTAAG
ATGTTTGGGTCTTCTTTTCATCTAAAACATTCAAGTTGTCTATTTTGTTG
AACTTTGGAGTCCATTTCCGTGACTGTGATCCCACTGGCGCGCTATAAAT
CAGCATGGAGTCACCCGGCATCGCGTCCAAATCATGAAGGACTCTATTCT
CTTTGGTGAGTATAATCATTTTTCGTTGTACGATTTCATCGTCGATGTCA
TCATTGCTCTCTGTAAGGTGGTGTCATTGCCGTGGTTTGTTTCCCAAGTT
CTCAATATCTTGGGAGCCCCGAAGGGCCTATACCTGCCTTCGTCGCGTTT
CCACGCCCTCGGTATCTCGGGAGCGCACTATGCATTTTACAAAGCGGCGG
CGCGCTCATCGGAACGAGGGAGAGAGAGCCCCCTCCTCATCCCCCTGGGG
GGGCAGATCCTCGTGGGCCTCCCGCTGGAGCTGGTGCGGCCGTGGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig966:139892..145788-

>mRNA_H-akashiwo_Contig966.6.1 ID=mRNA_H-akashiwo_Contig966.6.1|Name=mRNA_H-akashiwo_Contig966.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=171bp|location=Sequence derived from alignment at H-akashiwo_Contig966:139892..145788- (Heterosigma akashiwo CCMP452)
GTCTCAATCCTGTCTGGTTCAATTTGGGCTGCCCTCCAGGAGATAATTGA
ACGCCCAAGAGCCCTGCCCCTGCTACTAGGCACCGCTTTACCCCATGTTG
CTGTTTACTTTACAAATGTGATCATCTTCAAGATCCTCGTGGGCCTCCCG
CTGGAGCTGGTGCGGCCGTGG
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