mRNA_H-akashiwo_Contig966.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig966.3.1
Unique NamemRNA_H-akashiwo_Contig966.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig966.3.1 vs. uniprot
Match: A0A7S1YRX3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRX3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.350e-13
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:   67 LLQSSIGEEGSAGWQQ-GEAMPKTIVLCDLSEP--------------------------PAELPPFPVEFAEVEELDLSGNGLESLPP-LAVLQKLKRLYLGG 291
            +LQ  IGE GSA W Q G+ +PKT++LCDLS+                            A LPPFP EF+ +EELDLSGN L+S+P  +  L  L+ L+LGG
Sbjct:    3 MLQPPIGELGSANWDQVGDPIPKTLILCDLSDDCLSLLTTKHEGSKEDRNFSECTLLTASAVLPPFPEEFSIIEELDLSGNALDSIPDNINNLTNLRSLFLGG 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig966.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1YRX3_9STRA4.350e-1342.72Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig966contigH-akashiwo_Contig966:111005..111313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size309
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388061.1266963-UTR-H-akashiwo_Contig966:111004..1110161681388061.1266963-UTR-H-akashiwo_Contig966:111004..111016Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig966 111005..111016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388061.1362705-CDS-H-akashiwo_Contig966:111016..1113131681388061.1362705-CDS-H-akashiwo_Contig966:111016..111313Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig966 111017..111313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig966.3.1prot_H-akashiwo_Contig966.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig966 111017..111313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig966.3.1

>prot_H-akashiwo_Contig966.3.1 ID=prot_H-akashiwo_Contig966.3.1|Name=mRNA_H-akashiwo_Contig966.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=99bp
MDLVWISLLSRARSGSHSLLQSSIGEEGSAGWQQGEAMPKTIVLCDLSEP
PAELPPFPVEFAEVEELDLSGNGLESLPPLAVLQKLKRLYLGGSLANNS
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mRNA from alignment at H-akashiwo_Contig966:111005..111313+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig966.3.1 ID=mRNA_H-akashiwo_Contig966.3.1|Name=mRNA_H-akashiwo_Contig966.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig966:111005..111313+ (Heterosigma akashiwo CCMP452)
CGTCGGGAAAAAATGGATCTTGTTTGGATTTCACTGCTATCTCGAGCACG
AAGTGGCTCACACTCACTGTTGCAGTCTTCCATCGGCGAAGAAGGCTCTG
CAGGCTGGCAGCAAGGAGAGGCAATGCCCAAAACCATTGTCTTATGTGAC
TTGTCTGAACCACCTGCAGAGTTGCCTCCGTTCCCAGTTGAGTTTGCAGA
AGTAGAGGAACTTGATTTGAGTGGAAACGGCTTAGAATCGCTTCCGCCAC
TTGCGGTCTTGCAGAAACTCAAGCGGCTATATTTAGGAGGTTCACTTGCA
AACAATTCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig966:111005..111313+

>mRNA_H-akashiwo_Contig966.3.1 ID=mRNA_H-akashiwo_Contig966.3.1|Name=mRNA_H-akashiwo_Contig966.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=297bp|location=Sequence derived from alignment at H-akashiwo_Contig966:111005..111313+ (Heterosigma akashiwo CCMP452)
ATGGATCTTGTTTGGATTTCACTGCTATCTCGAGCACGAAGTGGCTCACA
CTCACTGTTGCAGTCTTCCATCGGCGAAGAAGGCTCTGCAGGCTGGCAGC
AAGGAGAGGCAATGCCCAAAACCATTGTCTTATGTGACTTGTCTGAACCA
CCTGCAGAGTTGCCTCCGTTCCCAGTTGAGTTTGCAGAAGTAGAGGAACT
TGATTTGAGTGGAAACGGCTTAGAATCGCTTCCGCCACTTGCGGTCTTGC
AGAAACTCAAGCGGCTATATTTAGGAGGTTCACTTGCAAACAATTCT
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