mRNA_H-akashiwo_Contig965.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig965.7.1
Unique NamemRNA_H-akashiwo_Contig965.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A7S3UX33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX33_HETAK)

HSP 1 Score: 155 bits (392), Expect = 3.000e-46
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 MPKINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 222
            MPKI+SFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK
Sbjct:    1 MPKIDSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 74          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A7S3UVA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA8_HETAK)

HSP 1 Score: 149 bits (376), Expect = 7.790e-41
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    7 KINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 222
            +I+SFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK
Sbjct:  281 QIDSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 352          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A7S2V249_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V249_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.310e-30
Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    7 KINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 222
            +I++FLEGFHEL P DLISIF P+ELELLISGLPDI+++DL+ NTEY  +K SDPQI WFW+VL SFS+EEK
Sbjct:   37 QIDAFLEGFHELCPPDLISIFTPKELELLISGLPDIDLSDLRVNTEYHQFKASDPQIAWFWNVLHSFSREEK 108          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A544ZQP1_9PEZI (HECT domain-containing protein n=1 Tax=Golovinomyces magnicellulatus TaxID=62714 RepID=A0A544ZQP1_9PEZI)

HSP 1 Score: 113 bits (282), Expect = 9.900e-29
Identity = 49/71 (69.01%), Postives = 62/71 (87.32%), Query Frame = 1
Query:    7 KINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEE 219
            ++ SFL+GFH+++PA+LISIFN QELELLISGLPDI+I+D + NTEYQ+Y PS PQIQWFW  +RSF +EE
Sbjct:   76 QMASFLQGFHDIIPAELISIFNEQELELLISGLPDIDIDDWRGNTEYQNYNPSSPQIQWFWRAVRSFDKEE 146          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A392PQ44_9FABA (E3 ubiquitin-protein ligase UPL1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PQ44_9FABA)

HSP 1 Score: 108 bits (269), Expect = 6.010e-28
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    4 PKINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 222
            P+IN+FLEGF E++P +LISIFN +ELELLISGLPDI+++DL+ANTEY  Y  + P IQWFW V++ FS+E+K
Sbjct:   34 PQINAFLEGFGEIIPKELISIFNDKELELLISGLPDIDLDDLRANTEYSGYSAASPVIQWFWEVVQGFSKEDK 106          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A392NVB6_9FABA (E3 ubiquitin-protein ligase UPL1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NVB6_9FABA)

HSP 1 Score: 107 bits (266), Expect = 1.920e-27
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    4 PKINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 222
            P+IN+FLEGF EL+P +LISIFN +ELELLISGLPDI+++DL+ANTEY  Y  + P IQWFW V++  S+E+K
Sbjct:   38 PQINAFLEGFSELIPRELISIFNDKELELLISGLPDIDLDDLRANTEYSGYSAASPVIQWFWEVVQDLSKEDK 110          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A812VCP5_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VCP5_SYMMI)

HSP 1 Score: 109 bits (272), Expect = 2.450e-27
Identity = 48/72 (66.67%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    7 KINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 222
            +I+ FL+GFH+LVPA+LISIF+P ELEL+ISGLPDI+I+DL+ NT+Y  Y+ S+P I WFW VLRSF++EEK
Sbjct:  126 QIDCFLQGFHDLVPAELISIFSPTELELIISGLPDIDIDDLRVNTDYHQYRVSEPCIVWFWDVLRSFTREEK 197          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A1D6MUA8_MAIZE (E3 ubiquitin-protein ligase UPL1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6MUA8_MAIZE)

HSP 1 Score: 115 bits (287), Expect = 2.490e-27
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1
Query:    4 PKINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEKP----YSFNLSLVQVRCRWKGLACFR 288
            P+IN+FLEGF+EL+P +LISIFN +ELELLISGLPDI+++DL+ANTEY  Y  + P IQWFW +++ FS+E+K     +    S V  R RWK L  F+
Sbjct: 1233 PQINAFLEGFNELIPRELISIFNDKELELLISGLPDIDLDDLKANTEYSGYSIASPVIQWFWEIVQGFSKEDKARFLQFVTGTSKVCCRYRWKVLVHFK 1331          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: UPI00053C0800 (E3 ubiquitin-protein ligase UPL2-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0800)

HSP 1 Score: 114 bits (285), Expect = 4.770e-27
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    4 PKINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 222
            P+IN+FLEGF+EL+P DLISIFN +ELELLISGLPDI+++DL+ANTEY  Y P  P IQWFW V++ FS+E+K
Sbjct: 3466 PQINAFLEGFNELIPRDLISIFNDKELELLISGLPDIDLDDLRANTEYSGYSPGSPVIQWFWEVVQGFSKEDK 3538          
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Match: A0A199UUN4_ANACO (E3 ubiquitin-protein ligase UPL2 (Fragment) n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UUN4_ANACO)

HSP 1 Score: 109 bits (272), Expect = 5.130e-27
Identity = 47/73 (64.38%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    4 PKINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQHYKPSDPQIQWFWSVLRSFSQEEK 222
            P+IN+FLEGF+EL+P +LISIFN +ELELLISGLPDI+++DL+ANTEY  Y  + P IQWFW +++ FS+E+K
Sbjct:   97 PQINAFLEGFNELIPRELISIFNDKELELLISGLPDIDLDDLRANTEYSGYSSATPVIQWFWEIVQGFSKEDK 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig965.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UX33_HETAK3.000e-4698.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UVA8_HETAK7.790e-4197.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V249_9STRA2.310e-3072.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A544ZQP1_9PEZI9.900e-2969.01HECT domain-containing protein n=1 Tax=Golovinomyc... [more]
A0A392PQ44_9FABA6.010e-2864.38E3 ubiquitin-protein ligase UPL1-like (Fragment) n... [more]
A0A392NVB6_9FABA1.920e-2764.38E3 ubiquitin-protein ligase UPL1-like (Fragment) n... [more]
A0A812VCP5_SYMMI2.450e-2766.67Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A1D6MUA8_MAIZE2.490e-2755.56E3 ubiquitin-protein ligase UPL1 n=1 Tax=Zea mays ... [more]
UPI00053C08004.770e-2768.49E3 ubiquitin-protein ligase UPL2-like n=1 Tax=Tare... [more]
A0A199UUN4_ANACO5.130e-2764.38E3 ubiquitin-protein ligase UPL2 (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig965contigH-akashiwo_Contig965:399638..400975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog28532.XP_010520834.1
PFAMsDUF4414,DUF908,DUF913,HECT,UBA
Model size364
Max annot lvl35493|Streptophyta
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons3
Evalue3.12e-28
EggNOG OGsCOG5021@1|root,KOG0939@2759|Eukaryota,37K9G@33090|Viridiplantae,3GFIV@35493|Streptophyta,3HQQB@3699|Brassicales
EC2.3.2.26
DescriptionE3 ubiquitin-protein ligase
Cds size294
COG categoryKO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.912852-UTR-H-akashiwo_Contig965:399637..3997071681388060.912852-UTR-H-akashiwo_Contig965:399637..399707Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig965 399638..399707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.9242795-CDS-H-akashiwo_Contig965:399707..3997551681388060.9242795-CDS-H-akashiwo_Contig965:399707..399755Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig965 399708..399755 -
1681388060.9346948-CDS-H-akashiwo_Contig965:400528..4006561681388060.9346948-CDS-H-akashiwo_Contig965:400528..400656Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig965 400529..400656 -
1681388060.9456193-CDS-H-akashiwo_Contig965:400857..4009751681388060.9456193-CDS-H-akashiwo_Contig965:400857..400975Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig965 400858..400975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig965.7.1prot_H-akashiwo_Contig965.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig965 399708..400975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig965.7.1

>prot_H-akashiwo_Contig965.7.1 ID=prot_H-akashiwo_Contig965.7.1|Name=mRNA_H-akashiwo_Contig965.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
MPKINSFLEGFHELVPADLISIFNPQELELLISGLPDININDLQANTEYQ
HYKPSDPQIQWFWSVLRSFSQEEKPYSFNLSLVQVRCRWKGLACFRA*
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mRNA from alignment at H-akashiwo_Contig965:399638..400975-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig965.7.1 ID=mRNA_H-akashiwo_Contig965.7.1|Name=mRNA_H-akashiwo_Contig965.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-akashiwo_Contig965:399638..400975- (Heterosigma akashiwo CCMP452)
ATGCCCAAGATTAATTCATTCTTAGAAGGGTTCCATGAGCTTGTGCCAGC AGATCTAATTAGTATTTTTAATCCTCAAGAATTGGAGCTTCTCATTTCTG GGCTTCCAGACATTAACAGTGAGTTTCTCCCTACACCCTGCTTTGTTGGC TTGTGGCTTTTTTCTTTCTATACAGTTGAAATGCAAACATACACACATAT ACTAATACACTAATATACTATCAATAAACCCCAATTTTGATTTATAAATA CGTACAATAGATTTTTCTTAATGCTTATATTCATTGATTGCGGTCGTCAA AACTCTTTGCCCTGCCTAGTCAATGACCTGCAGGCCAACACCGAATACCA GCACTACAAGCCCAGTGACCCCCAGATCCAGTGGTTTTGGTCGGTCTTAC GGTCATTTTCCCAGGAAGAAAAGCCCTATTCCTTCAATTTGTCACTGGTA TGTAAAAAAAAAAAAAAAAAGTGCATGATCATACAATCTTGTACATGTCA CGGTGCATGGATCTAATCGCATGGGGTGTGGACGTCTCGAATCTCCGACG GTGAGCGCCGCCCGTAAGAGACGAATCCACCACCGTGAGCTCCACCGGGA CTCGAACCCGCGACCTTGCCCAAAAATCTAGCTCGGCGCTTCAACGGCTA GGGCGATTCCGCTTGTAGTCGGATCAACGATTCAAAACATAAGACCTTTA ATCAAAATTTAAAACTGTCCCAAATCGTTACGGAAGGGTCAATCCGACTA GGGCTCGAACCAGGGATTCTAAAACTGTACTTAAAGTCAAAATTAGCTCA TTCCTTCCAAGATATGGCCGTCGGAAAGTCCATATGAAGAGGCCAGCCCG GCGGGTCTCACTGGGAGCTACCTCGTACAATTTTTACCATCGACCGTGTG TATAAATACACAATATATATAAATGCGAACTTATATATGATATTGTTTTC CCTTTACTTTTGCTGGTGATTCCGGCTCTGGTATATACACATGAAAGCTG ATTACCAATCTCCCGATTTTCACTCTCTTTTGAATCTAAAAACCAATAAA GCACGTGAAGACTGTTATATTTTGTTCACATTCTTCTGGCCTTTCAAAGC ATGTGCATTGTGTGGGAAAATAATGGTGTAACTGATCACTACGCTGGATT GCTACAGATTAAACATTTATTGGATTGTTAAAATTGTCTGTATCAATCTC TATGCGATTCTATATATCAGGTTCAAGTAAGGTGCCGCTGGAAGGGTTTG GCATGCTTCAGGGCATGAGGGGTATCCAGAAATTCAGCATCCATAAGGCT TACGGAGGAAGTAAACTACTTCCTGCATCCCACACTTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig965:399638..400975-

>mRNA_H-akashiwo_Contig965.7.1 ID=mRNA_H-akashiwo_Contig965.7.1|Name=mRNA_H-akashiwo_Contig965.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig965:399638..400975- (Heterosigma akashiwo CCMP452)
ATGCCCAAGATTAATTCATTCTTAGAAGGGTTCCATGAGCTTGTGCCAGC
AGATCTAATTAGTATTTTTAATCCTCAAGAATTGGAGCTTCTCATTTCTG
GGCTTCCAGACATTAACATCAATGACCTGCAGGCCAACACCGAATACCAG
CACTACAAGCCCAGTGACCCCCAGATCCAGTGGTTTTGGTCGGTCTTACG
GTCATTTTCCCAGGAAGAAAAGCCCTATTCCTTCAATTTGTCACTGGTTC
AAGTAAGGTGCCGCTGGAAGGGTTTGGCATGCTTCAGGGCATGA
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