mRNA_H-akashiwo_Contig964.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig964.10.1
Unique NamemRNA_H-akashiwo_Contig964.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig964.10.1 vs. uniprot
Match: A0A7S2V4J0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4J0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.650e-7
Identity = 28/62 (45.16%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    2 IIQLYLRMLLTFLGSCICTTLLACLKMTIGASIPLYVIFLPLFIGHVIAIGIYIYLSQTLYS 187
            ++QL+LR+LL  LG+ I T  L  L+ T  ++IPL+VIF+P++ GH++++GIY+ L + LY 
Sbjct:   29 LVQLHLRILLALLGTFIVTMTLLILQFTWLSAIPLFVIFIPVWCGHILSVGIYVELCRRLYK 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig964.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2V4J0_9STRA7.650e-745.16Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig964contigH-akashiwo_Contig964:351191..351546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size194
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388060.4210272-CDS-H-akashiwo_Contig964:351190..3513421681388060.4210272-CDS-H-akashiwo_Contig964:351190..351342Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig964 351191..351342 +
1681388060.432353-CDS-H-akashiwo_Contig964:351505..3515451681388060.432353-CDS-H-akashiwo_Contig964:351505..351545Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig964 351506..351545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig964.10.1prot_H-akashiwo_Contig964.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig964 351191..351545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig964.10.1

>prot_H-akashiwo_Contig964.10.1 ID=prot_H-akashiwo_Contig964.10.1|Name=mRNA_H-akashiwo_Contig964.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
DNTAVPADAFDISWVMYLHNLTGLSKNDNRGVHSIICDFPATFYWPRHCN
RDIHIFEPDIVQLL
back to top

mRNA from alignment at H-akashiwo_Contig964:351191..351546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig964.10.1 ID=mRNA_H-akashiwo_Contig964.10.1|Name=mRNA_H-akashiwo_Contig964.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=356bp|location=Sequence derived from alignment at H-akashiwo_Contig964:351191..351546+ (Heterosigma akashiwo CCMP452)
GATAATACAGCTGTACCTGCGGATGCTTTTGACATTTCTTGGGTCATGTA
TCTGCACAACCTTACTGGCCTGTCTAAAAATGACAATAGGGGCGTCCATT
CCATTATATGTGATTTTCCTGCCACTTTTTATTGGCCACGTCATTGCAAT
AGGCAAGGAAATTCGATGCACAGCACAACTTAACCACCTGTCTCTGTGAA
CCAGTGTTTTCTCCGATCCAAATAGCCATTTCATACATTTATAGATCGTC
GATGAATCACCATGATGCATTAAATGCATTCCACAATCACCCTTTTCCTA
CATATTGTTGCTCAGGGATATACATATATTTGAGCCAGACATTGTACAGC
TTTTGC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig964:351191..351546+

>mRNA_H-akashiwo_Contig964.10.1 ID=mRNA_H-akashiwo_Contig964.10.1|Name=mRNA_H-akashiwo_Contig964.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig964:351191..351546+ (Heterosigma akashiwo CCMP452)
GATAATACAGCTGTACCTGCGGATGCTTTTGACATTTCTTGGGTCATGTA
TCTGCACAACCTTACTGGCCTGTCTAAAAATGACAATAGGGGCGTCCATT
CCATTATATGTGATTTTCCTGCCACTTTTTATTGGCCACGTCATTGCAAT
AGGGATATACATATATTTGAGCCAGACATTGTACAGCTTTTG
back to top