mRNA_H-akashiwo_Contig1238.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1238.3.1
Unique NamemRNA_H-akashiwo_Contig1238.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A7S2V217_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V217_9STRA)

HSP 1 Score: 248 bits (633), Expect = 8.780e-82
Identity = 124/154 (80.52%), Postives = 128/154 (83.12%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIGGDGVPAMQPGGIRRVIIPFSLGYE-------------------IGPIPPVPEAFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKRGP 405
            GLQWADA+VGSGE PK+GSSV+IDYSMSTTGARYGTKIYSTQDKN PFRF IGDG AIKGLEQAIIGGDGVPAMQPGGIRRVIIP SLGYE                   +GPIPPVP AFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKR P
Sbjct:   64 GLQWADARVGSGEVPKKGSSVSIDYSMSTTGARYGTKIYSTQDKNTPFRFTIGDGTAIKGLEQAIIGGDGVPAMQPGGIRRVIIPSSLGYESLAKPIPGMQYQDCQEGKGVGPIPPVPAAFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKRAP 217          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A7S2I6Z6_9STRA (Peptidylprolyl isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I6Z6_9STRA)

HSP 1 Score: 201 bits (510), Expect = 8.300e-63
Identity = 99/152 (65.13%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIGGDGVPAMQPGGIRRVIIPFSLGYE-------------------IGPIPPVPEAFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKR 399
            GLQWADAKVGSG  P+ G   AIDY MSTTGARYGTKI ST D+ AP+R+ +GDG  I GLEQA++GG GVP M PGGIRRV+IP  LGYE                   +GPIPP   AF EYQRFKNIYCNANRPYQPDLV+D+KLYGKR
Sbjct:   84 GLQWADAKVGSGSPPQPGQPTAIDYVMSTTGARYGTKIDSTTDRGAPYRWTLGDGTTIAGLEQAVLGGGGVPPMLPGGIRRVVIPSKLGYESLARPIPGMQFQDCEEGRGVGPIPPTDVAFAEYQRFKNIYCNANRPYQPDLVLDVKLYGKR 235          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A7R9WQ21_9STRA (Peptidylprolyl isomerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ21_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.360e-62
Identity = 97/149 (65.10%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIGGDGVPAMQPGGIRRVIIPFSLGYE----------------IGPIPPVPEAFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKR 399
            GL+WADAKVGSG   + G   A+DY MST+GARYG KIYST DKNAP+R+ +GDG+ I GLEQA++GGDG+  M+PGGIRRVIIP +L Y                 +GPIPP  +AFEEYQRFKNIYCN NRPYQPDLVMDIKLYGKR
Sbjct:  142 GLEWADAKVGSGAVKQTGEIAAVDYVMSTSGARYGAKIYSTADKNAPYRWTLGDGSTIAGLEQAVVGGDGIEPMRPGGIRRVIIPGNLAYASLGKQGNADECQVGKGVGPIPPTGDAFEEYQRFKNIYCNPNRPYQPDLVMDIKLYGKR 290          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A448YUL1_9STRA (Peptidylprolyl isomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUL1_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.850e-55
Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIG-GDGVPAMQPGGIRRVIIPFSLGYEI---------------GPIPPVPEAFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKR 399
            G+QWADA+VG+G+  K G++  IDY MSTTGARYGTKIYST D + P+R+ +GDG+ I G+EQAI+G G+ +  M+PGGIRR++IP SLGY                 GPIPP  EAFEEYQRFKNIYCN  R YQPD+VMD+KLYG+R
Sbjct:   74 GIQWADARVGTGQPLKPGATATIDYVMSTTGARYGTKIYSTXDVDRPYRWNLGDGSTIAGIEQAILGDGESLTPMRPGGIRRIVIPQSLGYAKLAADSRTLCVENGAPGPIPPPKEAFEEYQRFKNIYCNNERQYQPDIVMDVKLYGQR 222          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: R1FWC5_EMIHU (Peptidylprolyl isomerase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FWC5_EMIHU)

HSP 1 Score: 174 bits (441), Expect = 7.360e-53
Identity = 94/155 (60.65%), Postives = 104/155 (67.10%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIGGDGVPAMQPGGIRRVIIPFSLGYE-----------------IGPIPPV---PEAFEE--YQRFKNIYCNANRPYQPDLVMDIKLYGKR 399
            GLQWADAKVGSG AP+    V IDY MSTTGARYG KI ST ++  P+ + +GDG+ I GLEQA+ GG GVP M PGG+RR IIP SL YE                  GPIPP    P    E  +QRFKNIYCNANRPYQPDLVMDIKLYGKR
Sbjct:   44 GLQWADAKVGSGTAPQAPCRVVIDYVMSTTGARYGAKIDSTAERQQPYAWALGDGSTIPGLEQAVAGGGGVPPMLPGGVRRAIIPSSLAYEGLARPLPGLQYQECGGGFGPIPPREVRPGDMGEGAFQRFKNIYCNANRPYQPDLVMDIKLYGKR 198          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A8J2SUF9_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUF9_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.190e-50
Identity = 87/158 (55.06%), Postives = 110/158 (69.62%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIGGDGVPAMQPGGIRRVIIPFSLGY-----------EI-------GPIPP-VPE-----AFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKRG 402
            GL++ADAKVGSG   + G  VA+DY MSTTGARYG+KI +T+D+N P+ + +GDG  I GLEQAI+GGDGVP M PGG+RR+I+P  L Y           +I       GP+PP  PE        EYQRFKNIYCN NRPYQPDLV+D++L+G++G
Sbjct:   55 GLEYADAKVGSGSPFRTGQRVAVDYVMSTTGARYGSKIDATKDRNEPYSWVLGDGTTILGLEQAILGGDGVPPMLPGGVRRLIVPAELAYIDKARPAKNSLQIQDCEKGRGPVPPNAPERAGDMGAGEYQRFKNIYCNPNRPYQPDLVLDVRLFGRKG 212          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A7S1Z6X7_TRICV (Peptidylprolyl isomerase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z6X7_TRICV)

HSP 1 Score: 156 bits (395), Expect = 1.930e-45
Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIGGDGVPAMQPGGIRRVIIPFSLGYE----------------IGPIPPVPEAFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKR 399
            GL+WADAKVGSG+  K G+  +IDYSM++T  R+  +IY+T+DK AP+R+ +GDG  I G+E+AIIG D +P M PGGIRRVIIP +LGYE                IGPIPP  +    YQR+   YCN   PYQPD+V+DIKLYGKR
Sbjct:   85 GLKWADAKVGSGQPLKTGAVASIDYSMASTAGRF-PQIYTTKDKGAPYRWTLGDGTTIAGIEKAIIGDDDIPPMLPGGIRRVIIPSNLGYEALAAPNSKCIEGLPGAIGPIPPKDD-IGAYQRWYTFYCNPRIPYQPDIVLDIKLYGKR 231          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A448Z5D9_9STRA (Peptidylprolyl isomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5D9_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.690e-42
Identity = 81/160 (50.62%), Postives = 104/160 (65.00%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIGGD--GVPAMQPGGIRRVIIPFSLGYE-------------------------IGPIPPVPEAFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKR 399
            GL+WADAKVGSGEA   GS+ +ID+SM++T  R+   IYST++ +AP+R+ +GDG+ IKG+E AI+G +  G+PAM+PGGIRRVI+P SLG+                          IGPIPP       YQR+   YCN   PYQPDLV+DIKLYGKR
Sbjct:  119 GLRWADAKVGSGEALAVGSTCSIDFSMASTAGRF-PSIYSTKNGDAPYRWTLGDGSTIKGIELAILGSEEEGIPAMKPGGIRRVIVPNSLGFNALIQQNKNASPASNNKRCLAGNXGSIGPIPPKDAPDGAYQRWYQFYCNPRIPYQPDLVLDIKLYGKR 277          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A1Q9DYF5_SYMMI (Peptidylprolyl isomerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DYF5_SYMMI)

HSP 1 Score: 149 bits (375), Expect = 2.460e-42
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIGGDGVPAMQPGGIRRVIIPFSLGYEIGPIPPVPEAFEEYQRFKNIYCNANRPYQPDLVMDIKLY 390
            GL++AD + G GE+PK G+ V IDY M TTGARYGTKI ST+D++ P+ F +GD + I GL +A      V  MQPGGIRRVIIP SLG+      P+P  F E+QRF+NIY N NR YQPDLV+D+KL+
Sbjct:  112 GLKYADVRPGKGESPKPGTKVTIDYVMMTTGARYGTKIDSTKDRDQPYSFVLGDPSIISGLSEA------VSTMQPGGIRRVIIPQSLGFTDESKQPIPPNFAEFQRFRNIYLNPNRVYQPDLVLDVKLF 235          
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Match: A0A7S4NC41_9STRA (Peptidylprolyl isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NC41_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.660e-42
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1
Query:    1 GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRFKIGDGAAIKGLEQAIIG--GDGVPAMQPGGIRRVIIPFSLGYE-----------------IGPIPPVPEAFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKR 399
            GL+WADAKVG+G+  + G+  +IDYSM++T  R+  +IY+T+DK AP+R+ IGDG  I G+E+AI+G   DG+P M PGGIRRVIIP   GYE                 +GPIPP  +    YQR+   YCN   PYQPDLV D+KLYG R
Sbjct:   68 GLKWADAKVGTGQPVQPGAPASIDYSMASTAGRF-PQIYTTKDKGAPYRWTIGDGTTISGIERAIVGDDADGIPPMLPGGIRRVIIPSKFGYEALAAPNAKCVEGGKDGAVGPIPPKDD-LGGYQRWVQFYCNPRIPYQPDLVFDVKLYGSR 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1238.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V217_9STRA8.780e-8280.52Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A7S2I6Z6_9STRA8.300e-6365.13Peptidylprolyl isomerase n=1 Tax=Helicotheca tames... [more]
A0A7R9WQ21_9STRA4.360e-6265.10Peptidylprolyl isomerase n=1 Tax=Craspedostauros a... [more]
A0A448YUL1_9STRA2.850e-5559.73Peptidylprolyl isomerase n=1 Tax=Pseudo-nitzschia ... [more]
R1FWC5_EMIHU7.360e-5360.65Peptidylprolyl isomerase n=2 Tax=Emiliania huxleyi... [more]
A0A8J2SUF9_9STRA2.190e-5055.06Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A7S1Z6X7_TRICV1.930e-4554.36Peptidylprolyl isomerase n=1 Tax=Trieres chinensis... [more]
A0A448Z5D9_9STRA1.690e-4250.63Peptidylprolyl isomerase n=1 Tax=Pseudo-nitzschia ... [more]
A0A1Q9DYF5_SYMMI2.460e-4256.92Peptidylprolyl isomerase n=1 Tax=Symbiodinium micr... [more]
A0A7S4NC41_9STRA2.660e-4250.66Peptidylprolyl isomerase n=1 Tax=Odontella aurita ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1238contigH-akashiwo_Contig1238:87716..88180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2903.EOD15110
PFAMsFKBP_C
Model size408
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.09e-54
EggNOG OGsCOG0545@1|root,KOG0549@2759|Eukaryota
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size408
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387128.7951136-CDS-H-akashiwo_Contig1238:87715..879891681387128.7951136-CDS-H-akashiwo_Contig1238:87715..87989Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1238 87716..87989 +
1681387128.806143-CDS-H-akashiwo_Contig1238:88046..881801681387128.806143-CDS-H-akashiwo_Contig1238:88046..88180Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1238 88047..88180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1238.3.1prot_H-akashiwo_Contig1238.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1238 87716..88180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1238.3.1

>prot_H-akashiwo_Contig1238.3.1 ID=prot_H-akashiwo_Contig1238.3.1|Name=mRNA_H-akashiwo_Contig1238.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=136bp
GLQWADAKVGSGEAPKEGSSVAIDYSMSTTGARYGTKIYSTQDKNAPFRF
KIGDGAAIKGLEQAIIGGDGVPAMQPGGIRRVIIPFSLGYEIGPIPPVPE
AFEEYQRFKNIYCNANRPYQPDLVMDIKLYGKRGP*
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mRNA from alignment at H-akashiwo_Contig1238:87716..88180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1238.3.1 ID=mRNA_H-akashiwo_Contig1238.3.1|Name=mRNA_H-akashiwo_Contig1238.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=465bp|location=Sequence derived from alignment at H-akashiwo_Contig1238:87716..88180+ (Heterosigma akashiwo CCMP452)
GGCTTGCAGTGGGCTGATGCTAAAGTTGGAAGTGGGGAGGCACCAAAAGA GGGTTCCTCTGTTGCTATCGATTATTCCATGTCAACAACGGGTGCCCGTT ACGGCACCAAGATTTATTCGACCCAGGATAAAAATGCCCCATTTAGATTC AAAATTGGCGATGGGGCTGCAATTAAGGGGCTGGAGCAGGCCATCATAGG AGGAGATGGGGTTCCAGCAATGCAGCCAGGAGGGATTCGAAGAGTGATCA TCCCCTTCTCGTTGGGCTACGAAAGTCTTGCAAAGCCTATTCCTGGCATG CAGTATCAGGATTGTCAAGAAGGTAAAGGAGTTGGTCCCATCCCTCCCGT GCCAGAGGCTTTTGAGGAGTATCAGCGCTTCAAGAACATTTATTGCAATG CTAACCGTCCATACCAGCCAGATTTGGTCATGGACATTAAGCTTTATGGA AAGAGGGGCCCTTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1238:87716..88180+

>mRNA_H-akashiwo_Contig1238.3.1 ID=mRNA_H-akashiwo_Contig1238.3.1|Name=mRNA_H-akashiwo_Contig1238.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig1238:87716..88180+ (Heterosigma akashiwo CCMP452)
GGCTTGCAGTGGGCTGATGCTAAAGTTGGAAGTGGGGAGGCACCAAAAGA
GGGTTCCTCTGTTGCTATCGATTATTCCATGTCAACAACGGGTGCCCGTT
ACGGCACCAAGATTTATTCGACCCAGGATAAAAATGCCCCATTTAGATTC
AAAATTGGCGATGGGGCTGCAATTAAGGGGCTGGAGCAGGCCATCATAGG
AGGAGATGGGGTTCCAGCAATGCAGCCAGGAGGGATTCGAAGAGTGATCA
TCCCCTTCTCGTTGGGCTACGAAATTGGTCCCATCCCTCCCGTGCCAGAG
GCTTTTGAGGAGTATCAGCGCTTCAAGAACATTTATTGCAATGCTAACCG
TCCATACCAGCCAGATTTGGTCATGGACATTAAGCTTTATGGAAAGAGGG
GCCCTTAG
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