mRNA_H-akashiwo_Contig940.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Stop	1
Start	0
Model size	269
Hectar predicted targeting category	other localisation
Exons	2
Cds size	216

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig940:146971..156512+
coding sequence from alignment at H-akashiwo_Contig940:146971..156512+

protein sequence of mRNA_H-akashiwo_Contig940.4.1

>prot_H-akashiwo_Contig940.4.1 ID=prot_H-akashiwo_Contig940.4.1|Name=mRNA_H-akashiwo_Contig940.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=72bp
AGEGTRACSHGPHAAGGAGRRVRAHDYRRLKSYAGKRSKPRWYIHSIDAV
PMLGQETTTTSVLAMSPLAFN*

mRNA from alignment at H-akashiwo_Contig940:146971..156512+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig940.4.1 ID=mRNA_H-akashiwo_Contig940.4.1|Name=mRNA_H-akashiwo_Contig940.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=9542bp|location=Sequence derived from alignment at H-akashiwo_Contig940:146971..156512+ (Heterosigma akashiwo CCMP452)
GCTGGGGAGGGCACCCGCGCGTGCTCTCACGGACCGCACGCTGCGGGCGG
TGCTGGAAGGAGGGTGCGGGCCCACGGTGAGGCGCCGCCGCCCACCGCCG
CCGCCCCTGCCCCCCAGACCTGCCGCTTGCTCCCCGTCTTTTCTTGCCGT
CGCTCGTCCAAGACCCACATcCCCCCGGCCCGTCCCCCAGTTGTCACATA
GTGTTTTGCATCTGAATGTGTGAGTACTAGTGTGTTTTTACATTTTTTCT
TTTTTTCTACGTTTCGGCATTTACAAGTAAGTGACAAAAAATGCTTGTTG
TAACTGTTGTGCTACCTCTACCCATTATCGTCCATGTGTGTACAGTTGTC
CTCTAAGAGGAAGGTATCCTTGTACATATACATTATAGCCTAGCTGAACT
ATTTTCTCCACTTTATGCCTTAGATCGTTCCACATGCCCGGAATTCTAGC
TCTAAAGCATCTTTTCAAACTTGCCAGGGCGCTGGCCGATGGTATAGAAT
GGAATATGATAGTGATATTGAATGACAGGTTTATAAGCACACTTTTCGTA
ATCCAACATAATTTCATATAAAAAAATCAAAACAACAGTAAGGTTATGTG
ATCTTGATGTTGGAAATGAAATTTCATAGACTTATGTCTCAGCGCTGCAT
TATTTTGAGCGGCTGGAAATACTGAAGAAGATCCGATTGTTGATCAACAT
ATTTAGCTCGAACGAAATTCTGTTGGATTGTAAAATTTTCCGTATATTGA
TCTGTCTGTCATTGGTTCTCCTTTTAAATCCAATTTTGAGTCAAGTACCT
CAATATGCTGCCGATGATACTCCCACTCTTTTTTAGAATTACTAGAAGAA
TTATTTGGGGTAAATCAATATGATCATAGAGGTCCGGGTCTGCGGACCAT
GAGGGCCCACCTCTGCCCTCTACATGGGGCAGGGCTGCGCAAACATACGC
AGGATGGAATCGGTCAGGATCAGATGCTGGCATGATGCTCAGGGCAGGGA
GTGTCCGGCGCTGCAGTTCTGCGCATTGGAGCACTGGATCCCTCCCAACA
CCTGTCGCTTTCGGTGGATTCAGGGGGAGTCCCACAAGGCCATGGCTTGC
TGCACAAGAGTGGGAGTAGGGAAGGGGATGGGGATGGACTGGGCTAATCA
GCATGGAGTGGTCCTGGTGGGCGCCGTTTGCGGTGGTGGCGACTCGAATT
GGTGGATATCGGGTTCTGCGAACGGTCTGGAGTGGAGAAGGAGGCACAAT
GTTGTTGACAGAAGGGCGATGAAGGCAAACAATCCTGATTTTCCGAGTTT
GGAAGCTGTTACAACGACGACGCCAGGAACGGACCATGCTGGGGAAGGCG
CAGGGCGAAAGCGCCGTGGGAAAAAAGCCCGTGAGCGGCTTCAAAGGCGG
ATTGAGGCCAGGATGAGAGATCGGTCCTCTACAAGACGGCCAGAGCAAGC
TCAGGCAAGCGGCACCAGCGTCGAAGTTCAAGAGCAAAGGGAGCAACAGC
ACCAGTCATCAGCCTTCGCTGCTGCTACTGCTGCTCCTGCTGCCCCTTCT
TGTGCTGATACCGCTGCTGCTAAGGGAGGGGATGATGACAGAGGGGAGTT
TTGTGGTTTATAAAACAGGAGCGAGCGAATCATCATCGCTAACTCTGGTT
TTAACGGAACCAATTTGGGGGGGTAAGAAAAACCGCAGTCTTCGATTGGA
GAGAGGGAGAGCCTGGGAGAATGCTCGGGATTACCCGGCACTGGCGAGAT
GGGCGGTTCGCCAATCAGGATGGCGGGGGGGACGGGAAGAAACGGGGGGG
GGGGGGAAGAAAGGCCAGCAGCTGATGTCTCATCGGCGGCCGTTGCTGCT
GCTGCTCATGTTGTCGATATCCTTCTTGACAACCTGCAAGGGGGTCGTCT
GAGTCGTCGGGCAGTGATGAAGACACTGAATCAAGTGATGAAGACACTGG
ATCAAGCTCTGGGGATGAGTCAGCAAGGGAACGCACAACAGCCCCAGCAA
AAAGGGGTGAATGGGAAACACAGAAGACAGCTGAGACAGACGGGTTCATG
CTGGTTGAGGCGAGAGCGAGCAAGAGGCTTGGTGGAACGGGAACGAGTAG
AGCGTGAAGCGAAGGCGAAGGAAGATGATAGACGGGACAGGCTGCTTCAG
AGTCAGCGGTATATTGAGGTCCTCCAGCGCCAACACCAAACCAGGGCCAG
GGCTGCTAAAGAGCGCCAGGACGCACAGGCCAGGGAGGCTGATGAAAGGG
CACGGAAACCTGGGGTCCAGGGGGGGGGTTGCAGCCAGGCGAGGGGGGCA
GACTGGCTGGGGGTGGGAGAGGAAGGGGAGGGGGCCCTGGAAGGGGCAAG
GGGGGGCCAGCTGGAGCTGGGGGGAGGGCGGTGAGTGTTGGGCAGCACCC
CCCAAGGCTGGCTGGCAAGCATAAGGAGTGCCCATGGCCATGGTGTGGCT
CACGGGAGAATAAGAGCGAGACATGGAGAGGGCGTAAGGAGATAGATTGT
GCAACTTGTGGTTGGAAAGTAGGGGAGGACAGGGGATGAGGAAAGGACTA
GCTACTGGAAAAGTGTGCAGTTGGGACCAGTGTGGTCTGTTTTCTTTTCT
TTTTCTTTTTCTGGAGTTTTGGTGATGTATATCAAAGAATGAGAAGTGGG
AACTAGTGGTGGCAGGGTTCGCATATTATGGAGGCCGGAGCTTCGGTCCT
TATAGTTATCCAAGAGGCGGACTTGAAATAATAAACCAAAATCATCATCA
TTGTCATCATGCTGCCGATGATGTTAGATTCAGTTTACAGTCTATAGCAT
TTTCAAAGTGTGTATTGAATCGCTCGTTATTACATAGAAAAATAACTTCT
AATACCACCCCTAGTTATTAGCTGTGTATAAAACATTATATTTTAAGAGT
GCATGCAGCCTGTGGCTCAATGCTCAATGCCATATGGAGAAAGGGGCAAG
ACGCCCTAAGAGGCCAAAGGCCTTCGTGTGCAAGCACAAGGCTTAAGCAA
ATATTCTCGTATTAGTAAAGTTGGATTATTGAAGGAATTAGTAGTACAGT
AGTAAGGCAGCGACTCGTGCTGCTTCCTATAACAACAACAACTGTAACAA
CAACAGTAGTGAATCTTTGTGCTGCTGATGACGCACACGCTCCTTCTTGT
TGACACGTGACAAAGCAcGCGTCATGGTTGTGCCTACAACCAATCAGAAG
AGAGAGCCACAACTTCTTCTTCACTGAGTGTAGAAGAAGTAGAAAAACGA
CCAGTGCCAACCAAGATGGTTGTCAACGGGATCGAACCGGGCGGTGGCTG
GTAGGTCAAGGACCCAGACGACTGCACTGTGATAGCTGTGTGAGTGGGCG
ATGCCACAACTAATGCTCCACCACAGCGGACAGATGAGCACAGCAACAGT
AGCAGGAGAAGAGAAATCCCCACCACTGGGCAAAGCTGAAGCTGTGTGAA
GAGAAACCTCCACCAGAGAGATAGCTCCACCAGATGAACTCCACCAGAGT
TGAAAGAAGTTGATTGTGCCATATCACCATCAAAGATCCTGCTTGAGTAT
AAACCCCACCAGAGCCAAGTATAGCCTGATGATGACAGATGAGAGAGCCC
CACCAAACGCCAAAGAGGGTTAAAAAGCAAGGAGCTACTTGAGAGCAAGT
AGTAGCCAATGATGCCCTTCTGCAAAGAGAGAATCAGGTAGCTGCCTTTG
AGGCCAGGATAAAAATAAATAAGAGCCATATATCAAACTAGGGTTTGCAC
AGCAAACATAGCCAATGCACCCATCATCAGAAAAGCCATCAAAACTGCAC
CGAGTCGTTCTTGAGAGCTTTGAACAGAGTATAATAGCAGACTGATTCGA
AGAACAAAAACTTTCAAAGTTGAGCAAAGAATACAGACTAATTTTTTCGA
AAGAATCAAGGCACCGTTTCCAACGCGCAGAATCGTGCTTGAGAGTTTTG
CAACGCTGGAGGAATACAGAAACCAATCTCGTAGGAATAGGTAGTTCGCA
AAGCAAGAAACCAACCTAACGTGCGAGTCGTTCTCGAGAGCTTTGCACGC
CAGGGTGAGAAAATTTGCAGAGCCTTGTTTTTACCGCACTAAAGCAGTAA
ACTGTCGCAATTGCAGAGCAATCCGTTGGCTAATGAGACCTCGTGAGATT
GACTTGCAGCAGTGTGTAAGATCCAAAATGGGAACAAGTTGAAACCATTG
GAAATCCAAAACGCATCCCAATTCTTCGAAGAAGAGGATGAAGAAGATGC
TTCCAGCAGCGGTTAGATATACCGTCGTCCCCTCGGGAGTTGACCAGGTC
CGGCAGTTGCCGTTAAGCACTCGAGCTTGGCGTTGTTTCGACCCATGGGA
GGATCTGAAAGCAGGGAGCGAAGGTAGAAGCAGAGAAACCTGTGTGACTG
AACCCGTAACCATTATATTTTAAGAGTGCATGCAGCCTGTGGCTCAATGC
TCAATGCCATATGGAGAAAGGGGCAAGACGCCCTAAGAGGCCAAAGGCCT
TCGTGTGCAAGCACAAGGCTTAAGCAAATATTCTCGTATTAGTAAAGTTG
GATTATTGAAGGAATTAGTAGTACAGTAGTAAGGCAGCGACTCGTGCTGC
TTCCTATAACAACAACAACTGTAACAACAACAGTAGTGAATCTTTGTGCT
GCTGATGGCGCTGCGCTCCTTCTTGTTGACACGTGACAAAGCACGCAGCG
TCATGGTTGTGCCTACAACCAATCAGAAGAGAGAGCCACAACTTCTTCTT
CACTGAGTGTAGAAGAAGTAGAAGAACGGCCAGTGCCAACCAAGATGGTT
GTCAACGGGGATCGAACCCGGGCCGGTGGCTGGTAGGTCAAGGACCTAGA
CGACTGCACTGTGATAGCTGTGTGAGTGGACGATGCCACAACTAATGTAA
AATATATCAATATATATATAAGATGGTGCAGGTCTGGTTGTCGCCGCAGG
AGGGGACACCCTCCTAGTGTGAGTGAATTGCCGAGACCTTCATTTAAACT
AACTTCAACATCATCATGAGCTCGGTGTATTGGGTGTATGAAGATGGTGC
AGGTCTGGTTGTCGCCGCAGGAGGGGACACCCTCCTAGTGTGAGTGAATT
GCCGAGACCTTCATAAACTAACTTTAACATCATCATCATCATATATATAT
ATATAATATATATATATATATGAGATGATGATTTTAGTTTATTTCAAGTC
CGCCTCTTGGATAACTACAAGGACCGAAGCCCCGGCCTCCATATGCGGAC
CCTTCCACTTCTAGGTCCCACTTTTGCCCCCCCATTCACCACCAAAACTT
AAGAAAGAAGAAAGAAAAAAAAAAAAGAAACAGAAGCAAAACAACAGCCA
CCCATACGCCCCCAGACGACATCCCTGTTGTTTGAGCCTCCCGCCTTTCT
AAAAGTCCAGCCTGCCCGTACTCCGCACAAACCTAGCCAGCCTCCCAACC
TCCTTCAACATGTTCGCCATACTGGCTCTGCGGCGTCATTCCGAACAATG
AGGTCACTCAACTCTTGCCGCTGTGCCGCCCATCGTGGGCAGTGGAGCAG
ATAATGCTCCACGTCCTCTCTCTCCCCTCTCCCACAGTTGTCACACTGCG
CCCTGTCTCGCTTCCCCCGGCATATATAGATATATATAGATATGACTACA
ACTAAATATAAATTGCTTGTTAGAAATGTTTAATAGATCAAAGCATCTCT
GTGTTTCTGAGTGAAGAAAATATTGGCCACGGTTGAAAAAAGCATTGTTT
GATGCCCCCCCTCCCTCCCCCCCCCCAGCCTTTTTACCTCCTGCTAGTCC
ACGTGAGTGTCATAGGATGAGAAAGTACAATTCAACGAAGATTTTCCTCG
TACTTCGCACTTGTACTTGCAAGTATGGAAAGTATGACTTAATCCCCTAA
CACCCACATTATGTATGATGTCATCCATGAAGCATGAATTcgGAGCAGTA
TTTCTCAAGGAGTTTTTGGCCTTTTTGAGCAAGGAAAAAGCTGTGAATTC
AATAACTCTATTTTGAGGAAAGTTTTATGCCGAATGATTAAAGCGCTTTT
TGAGACAGCTTGGAAAGTCATTTTTGTAATGTGTCGGGAAATAACCGAAG
TAGTCCAAATGGACTATTTGTGCGCAAGAGGGTTCACTCCTAAAAATGAC
CCCACCAGTATATTGACCGCGCGGCACCAAATCTGTGGTGGTGGTGGAAG
GGCTCAAGATGACAATGGAGGAGATGATAAAGGATTTGCCTCTGGGTTTT
TCAAATCCAGTGATTATGGTAGCAGTGACTGGGAGTTCTGGCGGAAGTAC
TAACATAAAGAGTCTGGTGCACACTCAAACTTAGACAGCGAGGAAGACCA
GACTCCAGTGGGTGCACCTGCTAGTAGACCAACCACTCGCCTCGCAGATA
TCAATCCAACCCCTGACGCTTTGAAGCAAATGACCGAGCTTGTAGATGAT
GGCATGTAGAGTGCTCAATTTTTTAAGTGGGTGGGGTTGGGGTGGGGTGG
GGCGGGCTGGCTTAGGGGGGTCCCCAAAACAAAAAGTACTTCTTATGGGG
AGTACAAAAAACTTTTCATCAAGTGGTGATTGTGATTGATTGGTACACAA
TGCATATGTATGACAGAAGGGACAACCAGATGGGAATAATAGTGGATGAC
GGCTGGGATGGGAATACCATAATGACGGATGATGGCTGAAGGGGAAGGGG
GGGGGGGGATTCTCATCTCTTACAAATAAAAGGGGATAGGGCTACATAGT
AGTTTGAAGAAAAAACACATTAGCTATATTATCGTGACTAGGCGTTTCAA
AAAAGCACACCTTAAAAATTAAAAAATTAAAAAATGGACCAAAAAGTACA
GGAAGTATGTACAAGATGTGTAAAACGTCTCGTACTTCCCGTACTTGAAA
AGCACTGTACATTTCCAACAGGCGTCGTACTTGCTCATCCTATGATGTAC
TTTCCAACAAGTGGTTACCTAGGGCTTTTATTCAGGACCTGGTAAGGCTT
GGCTGTACTTTATACAAAAAAGGGGGGCGGTCGGGGGGGGAAGAAAATGG
CCACTATTATTTTAGACTCAAAGCAACAAACCATCTTTTTAAAGTGAATA
TATATAAAGAACGCCTCATTATTGGGGTTGCAAAGTCTATACAACACGTG
ATCTGAAAGCTTTCACCGACCCTGCTCCAAGCCTTTGCATCATATACATG
TACATTCGGAGAAATAATGTGGGCCACCAAATGCTGCCTTCAAGTGTGCA
GGAGAGCCTATGGCAAGTACATGGAGCGGCTCAAGACCAAACTTGCCAAG
AAGGGGACCAGCGTTCTGGCTGATCACCAAATCGCACTCCGGCATGACTA
GACAGCGGCGGAAAGCTGCCCCCCCTGCTGAAGAGCCAAGAAGATGAGCC
TACCTGGTGAGGAGAGCAAAGAAGTGCCGAGCTGGAGCCGGCTCCACCTG
GAGCCAGAAGAAGGTTGGGGCTTCAAGATCACCTTGCGTGAAGTGTCTAA
GGTGCTGCAGTTGCTGGACGTGCGCAAATCCGTGGGCCCAGACGGAGTTA
GCCCGCGGGTGCTGAAGCACTGCGCCCGGCAGCTGGCGCGCCATCTCACT
CGGCTTTTTCAGAAAGTGGGCAAATCTGGTGAGTTCCCCAGGAGCTGGAA
GGTGGCAAGGGTCACCCCTGTCTACAAGAAGAAGGATGCCAGCCTCCCGG
AGAACTACCGGCCGATCTCGGTGCTGCCCACTTTGGCCACCACGTTTGAG
CGCGTTCTCATGAAGCAGCTCAGCAGTTTTCTCTTCGGGCACATCCCGCC
CAACCAGTTTGGCTTCCTACCTGGTACGGGGACGGTGGATGTCGGCGTTA
TCCTCGCCGACAGAATCTCCCTGGCCCTTGAAGCCAGGAAAGATGTGCGG
TTGGTGGCGATCGACTTTCAAGGGTGCCTTTGATAAGGTGTGGTGGCGGG
GTCTTCTTGCTCATCTCTGGACGGTGGGTGTGCGCTCCAAGGCCTTCTAG
CTGATGCAGAGCTACTTGTCAGACCGGGCCCTCTTTGTAGTGGCAAACGG
TGACAGCTCCAGTCATATGAGCATCAAGTCTGGGGTGCATGAGGGGCCAT
CTGGTCGCCTCTCCTCTTTGACCTCTTCATTCGCAATGTCCCACAGCGAG
TCAGGGAGGCTCTATGCCTCTTCTACACAGATGACCTCACCCTCTAGAAG
GATGTAGACAGGGGAGAGGGGGCGGCGCAGAGGGCAGCAGAGGAGCTGAA
CGATGATCTGCAGCGCCTCTATGAGTTTGGCAAGGAGTGGTAACTAGAGT
TTGAACCTACCAAGTCCCAGGAGCTGATCATCACCAACTTGGTTGCAAAA
ATAAGGTGACTCACCCTCCTCTATCCATGGGGGAGTGATTGTTGAAGAGA
AGGAGCAGCTGGGGGCTGGGTTTCACCATTGATCCGCGAGGTAACTGGTC
CCTACATGCGAGGCAGTAGCCAAGGAGGCCTGGAAGAGGCTTGGTGCCAT
TAGGAGGATCGCCCACATGCTGGATGATCGTGCCAAGATGATGGCCTACA
AGGCTTTTGTGCGATCAAAGATTGAGTACGGCAACCTCATCTACTGGGGG
TGGCCGAGGGCTATCTCGAAAAACTTGACAGGGTTCAAAGCAGTGCTGTC
TCGATGCTCGCGGACTCGTCTGCCTTCTTCATCCCCTCGTTGGAAAGTAG
GAGGCAGGCCGCGGTAGTTGGCCTCACCTGCAAGCTGCTCGGTGGCCAAG
GGCGGGGGGCGCTGAGTGAAGTGCAGCCAGTATTTGCTCCTCCTACGACC
GAGTCCACAAGATCCTCTGACAGACTCGCAGCAGCACAACAGGCGGGGGG
GCCGCAGCACCCTCATCAACTGACGGCTGCTGCAATCCGCCACACAGGGA
ACAGGTGCTCACTGGTGACGTACAAAAGGAGCTACAGAGCAAGAATCCCA
GAGATATGGAACAGCCTCGATCATGAAACTCTTCAACAGCAGCGCATAGA
AGGTTTCATCCCACTCAGGAAGCAGCTTCAACGTCATATTATCTCCCAGC
CACATCAGAAGTCTTAGAAAAAGAAGGGGGGAAATGGAAAGAAAGAAAAA
TGCAAATGACATGAGCAGAGGTAGCATTATAGCCTAGCTGAACTATTTTC
TCCACTTTGTGCTTACACGAAGACAAAAAAAAACACACATAATATAGGAA
GTGATACATATATTAATTTTTATGACATTTTTGTAATAATTGTCCTATTA
CAACAATCAACAAAGCCACTGCTCTCTATGGATTTACTACGTATGGTTGA
TTTGGTCGTGACTATGCCTCACACTTTCACCCCCTATTCCCCCACAATAG
ATTATCGCAGACTCAAAAGCTATGCTGGGAAAAGGTCAAAGCCCCGCTGG
TATATTCACTCGATTGATGCAGTGCCGATGCTAGGACAAGAGACAACTAC
TACATCAGTTTTGGCCATGTCTCCACTAGCATTTAATTGAAAATATGTTT
TTGGCTACTGATGGATTATCGTCTAATACATGATTACTTTCC

Coding sequence (CDS) from alignment at H-akashiwo_Contig940:146971..156512+

>mRNA_H-akashiwo_Contig940.4.1 ID=mRNA_H-akashiwo_Contig940.4.1|Name=mRNA_H-akashiwo_Contig940.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=216bp|location=Sequence derived from alignment at H-akashiwo_Contig940:146971..156512+ (Heterosigma akashiwo CCMP452)
GCTGGGGAGGGCACCCGCGCGTGCTCTCACGGACCGCACGCTGCGGGCGG
TGCTGGAAGGAGGGTGCGGGCCCACGATTATCGCAGACTCAAAAGCTATG
CTGGGAAAAGGTCAAAGCCCCGCTGGTATATTCACTCGATTGATGCAGTG
CCGATGCTAGGACAAGAGACAACTACTACATCAGTTTTGGCCATGTCTCC
ACTAGCATTTAATTGA

mRNA_H-akashiwo_Contig940.4.1 (mRNA) Heterosigma akashiwo CCMP452

ZOOM

x 1

POSITION

0