mRNA_H-akashiwo_Contig87.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig87.16.1
Unique NamemRNA_H-akashiwo_Contig87.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 471 bits (1211), Expect = 1.200e-164
Identity = 227/311 (72.99%), Postives = 267/311 (85.85%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLVLGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKALNAEVFD 933
            M+AVYVDDLV+S +   VV+ FK S AS++++TD G L  ILGIKV RD RNKCF+LSQ SFI+DA++KFGLD+LPAC+TP+  T DLTPTPGFK+ L D+N YRSMVGTLAWVANWTRPELAFTVHKLQR Q NPEPKHFEA QRAFRYLKGT S+ LRLGGDLVL A++D +DFC DR+DGKSVTGY++ LGD+PIVW+SK Q AVTTSTVEAEYLALRS +KDIMWLR LL ++ CPQ EPTPV+EDNSAC+EWA DM+V+++ RHFHVSYHLAKEQV+LGTIRM Y +T DQ+A+I TKALNA  F+
Sbjct:   32 MVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSD-SDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 341          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 231 bits (589), Expect = 1.460e-71
Identity = 111/151 (73.51%), Postives = 128/151 (84.77%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYL 453
            M+AVYVDDLV+S +   +V+ FK S AS++N+TD G L  ILGIKV RD RNKCF+LSQ SFI+DA++KFGLD+LPAC+TP+  T DLTPTPGFK+ L D+N YRSMVGTLAWVANWTRPELAFTVHKLQR Q NPEPKHFEA QRAFRYL
Sbjct:  118 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 235 bits (599), Expect = 8.310e-67
Identity = 127/308 (41.23%), Postives = 184/308 (59.74%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLP--DSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLVLGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKALN 918
            +I+VYVDD+VL+S+    ++  K + +  +N++D+G ++SILGIKV RD   +   LSQ SFI +A  KF +        P+    D+         L   ++ ++RS+VGT+ W+A WT PE+A+++H L +  ++P      A+    RYL  T    + LGG L L AY D ADFC +R  G+S +G+ I LG SPI+W+S+ Q  VT +T EAEY++LR+ + D+MWL+ LL  L   Q    P+ EDN ACI WA D  VS+  RH HVSYH  KE V    I + Y  T  Q+A++FTK L+
Sbjct:  677 LISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYAD-ADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLD 982          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A5E8CAX7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8CAX7_9ASCO)

HSP 1 Score: 198 bits (504), Expect = 4.600e-55
Identity = 117/313 (37.38%), Postives = 175/313 (55.91%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLV--LGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKALNAEVFD 933
            +IA+YVDDL++S N   V+   K+S +S F + DLGP++  LG++V +   +    +S+  +I D + +FG+    + +TP+ T  DL+       S  D++ YRS++G L + AN  RP+LA  V  L RY  +P+  H EAA+   RYLKGT    L      V  L  Y+D AD+ QD+ D KS TGYV +L   PI WA + Q +  +S+VE+EY++L    K+  W+  LL     P   P  + EDN  CI  A++ V  R+T+H  V YH+ +  +  G I + Y  T   LA++FTK L    F+
Sbjct:  287 IIALYVDDLLISGNSSEVIAKTKSSLSSMFKMKDLGPVEQFLGMRVKQSPYHITVDVSR--YIFDMLEEFGMQNCSSVKTPLPTR-DLSDF-SESDSATDASMYRSIIGKLIYAANCARPDLAVAVSFLCRYMQSPKSIHMEAAKHTLRYLKGTAELGLEYRAQKVYKLVGYSD-ADYAQDKQDRKSFTGYVFILSGGPITWACRKQVSPASSSVESEYMSLSDASKECFWINQLLSLCKIPVPLPVTMFEDNQGCIALAQNPVFHRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFE 594          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A5E8C8X3_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C8X3_9ASCO)

HSP 1 Score: 201 bits (510), Expect = 2.580e-54
Identity = 118/313 (37.70%), Postives = 175/313 (55.91%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLV--LGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKALNAEVFD 933
            +IA+YVDDL++S N   V+   K+S +S F + DLGP++  LG++V +   +    +S+  +I D + +FG+    + +TP+ T  DL+       S  D++ YRS++G L + AN  RP+LA  V  L RY  NP+  H EAA+   RYLKGT    L      V  L  Y+D AD+ QD+ D KS TGYV +L   PI WA + Q +  +S+VE+EY++L    K+  W+  LL     P   P  + EDN  CI  A++ V  R+T+H  V YH+ +  +  G I + Y  T   LA++FTK L    F+
Sbjct:  957 IIALYVDDLLISGNSSEVIAKTKSSLSSMFKMKDLGPVEQFLGLRVKQSPYHITVDVSR--YIFDMLEEFGMQNCSSVKTPLPTR-DLSDF-SESDSATDASMYRSIIGKLIYAANCARPDLAVAVSFLCRYMQNPKSIHMEAAKHTLRYLKGTAELGLEYRAQKVYKLVGYSD-ADYAQDKQDRKSFTGYVFILSGGPITWACRKQVSPASSSVESEYMSLSDASKECFWINQLLSLCKIPVPLPVTMFEDNQGCIALAQNPVFHRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFE 1264          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A507DR08_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DR08_9FUNG)

HSP 1 Score: 199 bits (506), Expect = 2.650e-54
Identity = 116/321 (36.14%), Postives = 179/321 (55.76%), Query Frame = 1
Query:    4 IAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATT------ADLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLVLGAYTDDADFCQDRIDGKSVTGYVIMLGDS-PIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQ-----AEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKALNAEVF 930
            I+VYVDDL++ +     ++S K S  + FN T+LG ++  LG++V RD      YL Q S++ D + +FG+       TPM  T       + T T    S  P    YR +VG+L ++   TRP++A  V  L R+ SNP P+H +AA+R  RYL+GT +  L +GG+ V      DAD+  + ID +S+TGY+  +G++ P+ WASK Q  V  S+ EAEY+AL    ++  WLR LL +L  P+     A  T + +DN +CI  A + V   +T+H  + +H  ++ V+   I + Y  T++ +A+  TK L A  F
Sbjct:  417 ISVYVDDLLIFAKNKSEMSSIKASLHNEFNTTNLGKVNHYLGMRVRRDYTRHVIYLDQESYVNDILERFGMQDCKPVNTPMDQTKLEPYEVENTKT----SPNPQEGEYREIVGSLMYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSTYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFCIGNAGPVTWASKRQPTVALSSTEAEYMALSFATQETTWLRSLLQELQIPEYLDENARSTTIYKDNQSCISLAMNPVHHARTKHIDIRHHFIRDHVDK-EIHLEYLPTAEMVADSLTKPLPAPAF 732          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A5E8BZ07_9ASCO (Uncharacterized protein n=4 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZ07_9ASCO)

HSP 1 Score: 200 bits (509), Expect = 3.350e-54
Identity = 118/313 (37.70%), Postives = 175/313 (55.91%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLV--LGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKALNAEVFD 933
            +IA+YVDDL++S N   V+   K+S +S F + DLGP++  LG++V +   +    +S+  +I D + +FG+    + +TP+ T  DL+       S  D++ YRS++G L + AN  RP+LA  V  L RY  NP+  H EAA+   RYLKGT    L      V  L  Y+D AD+ QD+ D KS TGYV +L   PI WA + Q +  +S+VE+EY++L    K+  W+  LL     P   P  + EDN  CI  A++ V  R+T+H  V YH+ +  +  G I + Y  T   LA++FTK L    F+
Sbjct: 1588 IIALYVDDLLISGNSSEVIAKTKSSLSSMFKMKDLGPVEQFLGMRVKQSPYHITVDVSR--YIFDMLEEFGMQNCSSVKTPLPTR-DLSDF-SESDSATDASMYRSIIGKLIYAANCARPDLAVAVSFLCRYMQNPKSIHMEAAKHTLRYLKGTAELGLEYRAQKVYKLVGYSD-ADYAQDKQDRKSFTGYVFILSGGPITWACRKQVSPASSSVESEYMSLSDASKECFWINQLLSLCKIPVPLPVTMFEDNQGCIALAQNPVFHRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFE 1895          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A5E8B667_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8B667_9ASCO)

HSP 1 Score: 200 bits (509), Expect = 3.470e-54
Identity = 118/313 (37.70%), Postives = 175/313 (55.91%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLV--LGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKALNAEVFD 933
            +IA+YVDDL++S N   V+   K+S +S F + DLGP++  LG++V +   +    +S+  +I D + +FG+    + +TP+ T  DL+       S  D++ YRS++G L + AN  RP+LA  V  L RY  NP+  H EAA+   RYLKGT    L      V  L  Y+D AD+ QD+ D KS TGYV +L   PI WA + Q +  +S+VE+EY++L    K+  W+  LL     P   P  + EDN  CI  A++ V  R+T+H  V YH+ +  +  G I + Y  T   LA++FTK L    F+
Sbjct: 1480 IIALYVDDLLISGNSSEVIAKTKSSLSSMFKMKDLGPVEQFLGMRVKQSPYHITVDVSR--YIFDMLEEFGMQNCSSVKTPLPTR-DLSDF-SESDSATDASMYRSIIGKLIYAANCARPDLAVAVSFLCRYMQNPKSIHMEAAKHTLRYLKGTAELGLEYRAQKVYKLVGYSD-ADYAQDKQDRKSFTGYVFILSGGPITWACRKQVSPASSSVESEYMSLSDASKECFWINQLLSLCKIPVPLPVTMFEDNQGCIALAQNPVFHRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFE 1787          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A5E8C4Z1_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4Z1_9ASCO)

HSP 1 Score: 200 bits (508), Expect = 3.620e-54
Identity = 118/313 (37.70%), Postives = 175/313 (55.91%), Query Frame = 1
Query:    1 MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLV--LGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKALNAEVFD 933
            +IA+YVDDL++S N   V+   K+S +S F + DLGP++  LG++V +   +    +S+  +I D + +FG+    + +TP+ T  DL+       S  D++ YRS++G L + AN  RP+LA  V  L RY  NP+  H EAA+   RYLKGT    L      V  L  Y+D AD+ QD+ D KS TGYV +L   PI WA + Q +  +S+VE+EY++L    K+  W+  LL     P   P  + EDN  CI  A++ V  R+T+H  V YH+ +  +  G I + Y  T   LA++FTK L    F+
Sbjct:  734 IIALYVDDLLISGNSSEVIAKTKSSLSSMFKMKDLGPVEQFLGMRVKQSPYHITVDVSR--YIFDMLEEFGMQNCSSVKTPLPTR-DLSDF-SESDSATDASMYRSIIGKLIYAANCARPDLAVAVSFLCRYMQNPKSIHMEAAKHTLRYLKGTAELGLEYRAQKVYKLVGYSD-ADYAQDKQDRKSFTGYVFILSGGPITWACRKQVSPASSSVESEYMSLSDASKECFWINQLLSLCKIPIPLPVTMFEDNQGCIALAQNPVFHRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFE 1041          
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 190 bits (483), Expect = 4.610e-54
Identity = 112/310 (36.13%), Postives = 172/310 (55.48%), Query Frame = 1
Query:    4 IAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDLRNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLT----PTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTHSDRLRLGGDLV--LGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVWASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANIFTKAL 915
            I +YVDDL+++S     +N+ K      F + DLG +  ILGI+V  D+  K   L Q  +I D + +F         TP+  +  +T    P    + ++     +RS++G+L+++A  TRP++A  V +L RY  NP  +H++AA +  RYLKGT +  +  GG +   L AY+D AD+  DR D +SV+G V+ML  +P+VW +  Q  V  ST EAEY+AL   +K+ MW R LL +L   Q   T + EDN   I  AR+     +T+H  + YH  +E++  G I + Y  T +Q+A+  TK L
Sbjct:   67 ICLYVDDLLIASPDMATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSD-ADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig87.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.200e-16472.99Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK1.460e-7173.51Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK8.310e-6741.23Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A5E8CAX7_9ASCO4.600e-5537.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C8X3_9ASCO2.580e-5437.70Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A507DR08_9FUNG2.650e-5436.14DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
A0A5E8BZ07_9ASCO3.350e-5437.70Uncharacterized protein n=4 Tax=Saprochaete ingens... [more]
A0A5E8B667_9ASCO3.470e-5437.70Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A5E8C4Z1_9ASCO3.620e-5437.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3JMT1_9STRA4.610e-5436.13Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig87contigH-akashiwo_Contig87:910709..911641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35725.K2R9C2
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size933
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.26e-48
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota
Descriptionretrotransposon
Cds size933
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388018.7907856-CDS-H-akashiwo_Contig87:910708..9116411681388018.7907856-CDS-H-akashiwo_Contig87:910708..911641Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig87 910709..911641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig87.16.1prot_H-akashiwo_Contig87.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig87 910709..911641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig87.16.1

>prot_H-akashiwo_Contig87.16.1 ID=prot_H-akashiwo_Contig87.16.1|Name=mRNA_H-akashiwo_Contig87.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=311bp
MIAVYVDDLVLSSNIPPVVNSFKTSFASRFNITDLGPLDSILGIKVTRDL
RNKCFYLSQASFIRDAISKFGLDFLPACRTPMATTADLTPTPGFKSSLPD
SNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRY
LKGTHSDRLRLGGDLVLGAYTDDADFCQDRIDGKSVTGYVIMLGDSPIVW
ASKPQTAVTTSTVEAEYLALRSGIKDIMWLRHLLVDLSCPQAEPTPVIED
NSACIEWARDMVVSRKTRHFHVSYHLAKEQVNLGTIRMHYARTSDQLANI
FTKALNAEVFD
back to top

mRNA from alignment at H-akashiwo_Contig87:910709..911641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig87.16.1 ID=mRNA_H-akashiwo_Contig87.16.1|Name=mRNA_H-akashiwo_Contig87.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=933bp|location=Sequence derived from alignment at H-akashiwo_Contig87:910709..911641+ (Heterosigma akashiwo CCMP452)
ATGATTGCGGTGTACGTGGATGATCTGGTACTCAGCAGCAATATTCCTCC TGTCGTTAATAGTTTCAAAACCTCCTTTGCCTCGCGTTTCAACATTACCG ATCTTGGTCCTCTCGATTCCATTCTCGGCATCAAAGTGACTCGGGACCTT CGTAATAAGTGCTTCTATCTCAGTCAGGCTTCTTTCATCAGGGACGCCAT CTCCAAGTTCGGTTTGGATTTCCTGCCGGCTTGCCGCACTCCCATGGCCA CCACCGCTGATTTGACTCCCACGCCTGGCTTCAAGTCCTCCTTGCCTGAT TCCAACAGGTATAGATCGATGGTTGGCACCCTGGCTTGGGTAGCCAACTG GACGCGGCCTGAGCTTGCTTTTACAGTGCACAAGCTTCAAAGGTATCAAA GTAACCCTGAGCCCAAGCATTTTGAGGCTGCCCAGCGAGCATTCAGGTAT CTCAAAGGCACCCATTCTGATAGACTGAGGCTTGGGGGGGACCTGGTTCT CGGTGCATATACTGATGATGCTGACTTCTGCCAAGACAGGATTGATGGCA AATCCGTCACCGGCTATGTGATCATGCTTGGGGACTCGCCTATTGTGTGG GCCTCAAAGCCTCAGACTGCAGTTACTACGTCCACTGTGGAGGCTGAGTA TCTGGCACTAAGGTCTGGGATTAAGGACATCATGTGGCTGAGACATCTTC TTGTGGACCTTTCATGCCCTCAGGCTGAGCCTACACCAGTCATTGAGGAC AACTCTGCCTGTATAGAGTGGGCAAGAGATATGGTTGTTTCCAGAAAAAC CAGGCACTTTCATGTGTCCTACCACCTGGCTAAAGAACAAGTGAACCTTG GGACCATCAGGATGCACTATGCCAGGACCAGTGATCAGTTGGCTAACATT TTCACAAAGGCTTTGAATGCAGAAGTTTTTGAT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig87:910709..911641+

>mRNA_H-akashiwo_Contig87.16.1 ID=mRNA_H-akashiwo_Contig87.16.1|Name=mRNA_H-akashiwo_Contig87.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=933bp|location=Sequence derived from alignment at H-akashiwo_Contig87:910709..911641+ (Heterosigma akashiwo CCMP452)
ATGATTGCGGTGTACGTGGATGATCTGGTACTCAGCAGCAATATTCCTCC
TGTCGTTAATAGTTTCAAAACCTCCTTTGCCTCGCGTTTCAACATTACCG
ATCTTGGTCCTCTCGATTCCATTCTCGGCATCAAAGTGACTCGGGACCTT
CGTAATAAGTGCTTCTATCTCAGTCAGGCTTCTTTCATCAGGGACGCCAT
CTCCAAGTTCGGTTTGGATTTCCTGCCGGCTTGCCGCACTCCCATGGCCA
CCACCGCTGATTTGACTCCCACGCCTGGCTTCAAGTCCTCCTTGCCTGAT
TCCAACAGGTATAGATCGATGGTTGGCACCCTGGCTTGGGTAGCCAACTG
GACGCGGCCTGAGCTTGCTTTTACAGTGCACAAGCTTCAAAGGTATCAAA
GTAACCCTGAGCCCAAGCATTTTGAGGCTGCCCAGCGAGCATTCAGGTAT
CTCAAAGGCACCCATTCTGATAGACTGAGGCTTGGGGGGGACCTGGTTCT
CGGTGCATATACTGATGATGCTGACTTCTGCCAAGACAGGATTGATGGCA
AATCCGTCACCGGCTATGTGATCATGCTTGGGGACTCGCCTATTGTGTGG
GCCTCAAAGCCTCAGACTGCAGTTACTACGTCCACTGTGGAGGCTGAGTA
TCTGGCACTAAGGTCTGGGATTAAGGACATCATGTGGCTGAGACATCTTC
TTGTGGACCTTTCATGCCCTCAGGCTGAGCCTACACCAGTCATTGAGGAC
AACTCTGCCTGTATAGAGTGGGCAAGAGATATGGTTGTTTCCAGAAAAAC
CAGGCACTTTCATGTGTCCTACCACCTGGCTAAAGAACAAGTGAACCTTG
GGACCATCAGGATGCACTATGCCAGGACCAGTGATCAGTTGGCTAACATT
TTCACAAAGGCTTTGAATGCAGAAGTTTTTGAT
back to top