mRNA_H-akashiwo_Contig869.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig869.5.1
Unique NamemRNA_H-akashiwo_Contig869.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig869.5.1 vs. uniprot
Match: A0A7S3XUH9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUH9_HETAK)

HSP 1 Score: 108 bits (269), Expect = 5.010e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 VTVKWSNIESPSSEDFLAFYAPPEILTTSAINQTVPITFQYAYNSPSHLSTG 156
            VTVKWSNIESPSSEDFLAFYAPPEILTTSAINQTVPITFQYAYNSPSHLSTG
Sbjct:   20 VTVKWSNIESPSSEDFLAFYAPPEILTTSAINQTVPITFQYAYNSPSHLSTG 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig869.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XUH9_HETAK5.010e-28100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig869contigH-akashiwo_Contig869:148658..149098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15699506
PFAMsMetallophos,Metallophos_C,Pur_ac_phosph_N
Model size156
Max annot lvl33154|Opisthokonta
KEGG koko:K22390
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue0.000465
EggNOG OGsCOG1409@1|root,KOG1378@2759|Eukaryota,39R9D@33154|Opisthokonta
Descriptionacid phosphatase activity
Cds size156
COG categoryG
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388017.945999-CDS-H-akashiwo_Contig869:148657..1486831681388017.945999-CDS-H-akashiwo_Contig869:148657..148683Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig869 148658..148683 +
1681388017.9559636-CDS-H-akashiwo_Contig869:148968..1490981681388017.9559636-CDS-H-akashiwo_Contig869:148968..149098Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig869 148969..149098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig869.5.1prot_H-akashiwo_Contig869.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig869 148658..149098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig869.5.1

>prot_H-akashiwo_Contig869.5.1 ID=prot_H-akashiwo_Contig869.5.1|Name=mRNA_H-akashiwo_Contig869.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
VTVKWSNIESPSSEDFLAFYAPPEILTTSAINQTVPITFQYAYNSPSHLS
TG
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mRNA from alignment at H-akashiwo_Contig869:148658..149098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig869.5.1 ID=mRNA_H-akashiwo_Contig869.5.1|Name=mRNA_H-akashiwo_Contig869.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=441bp|location=Sequence derived from alignment at H-akashiwo_Contig869:148658..149098+ (Heterosigma akashiwo CCMP452)
GTAACAGTGAAATGGTCGAACATAGAGTGAGTTTGGTGTTCGTTTTTGCC
ACCGCGACAATGATGCTCATCCACCTGTCCCCCACAATATACATAATTCT
GAACTGAAAAGTGCCGTCTAGTGTTGTAACTGACACGTCTGGCGCTGAAT
GTCATTCATGCATGCATGCAATTTGACGACTTTTTCATGGTCTGCCATTG
AATCTTTATTCATTCAGCATTGGGCATCACCCCTTGATTAATCGTGTGTT
GTGTTTTACGTAGTTGTTGCTTCTGCTGACCAACTTCATTTTACCACCGT
GCTGCTTTCAGGTCTCCTTCCAGCGAGGATTTTCTGGCATTTTATGCCCC
ACCAGAAATCCTCACCACAAGTGCAATAAATCAAACTGTCCCAATCACAT
TTCAGTATGCTTACAACAGTCCTTCGCACCTATCAACTGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig869:148658..149098+

>mRNA_H-akashiwo_Contig869.5.1 ID=mRNA_H-akashiwo_Contig869.5.1|Name=mRNA_H-akashiwo_Contig869.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig869:148658..149098+ (Heterosigma akashiwo CCMP452)
GTAACAGTGAAATGGTCGAACATAGAGTCTCCTTCCAGCGAGGATTTTCT
GGCATTTTATGCCCCACCAGAAATCCTCACCACAAGTGCAATAAATCAAA
CTGTCCCAATCACATTTCAGTATGCTTACAACAGTCCTTCGCACCTATCA
ACTGGG
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