mRNA_H-akashiwo_Contig850.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig850.11.1
Unique NamemRNA_H-akashiwo_Contig850.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig850.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig850contigH-akashiwo_Contig850:366157..366720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size564
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388011.97305-UTR-H-akashiwo_Contig850:366156..3661871681388011.97305-UTR-H-akashiwo_Contig850:366156..366187Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig850 366157..366187 +
1681388011.9891324-UTR-H-akashiwo_Contig850:366496..3667201681388011.9891324-UTR-H-akashiwo_Contig850:366496..366720Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig850 366497..366720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388011.9813466-CDS-H-akashiwo_Contig850:366187..3664961681388011.9813466-CDS-H-akashiwo_Contig850:366187..366496Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 366188..366496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig850.11.1prot_H-akashiwo_Contig850.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig850 366188..366496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig850.11.1

>prot_H-akashiwo_Contig850.11.1 ID=prot_H-akashiwo_Contig850.11.1|Name=mRNA_H-akashiwo_Contig850.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
MAPLYPTFCASASFGNDKLPFYGYHEWLVFLTACQGGWERPLCCFQTSKM
PGDSMLLKPFACCFQTCTVHQMPLVLPTANLYQRCSETCRGAESGVELAA
QQ*
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mRNA from alignment at H-akashiwo_Contig850:366157..366720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig850.11.1 ID=mRNA_H-akashiwo_Contig850.11.1|Name=mRNA_H-akashiwo_Contig850.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=564bp|location=Sequence derived from alignment at H-akashiwo_Contig850:366157..366720+ (Heterosigma akashiwo CCMP452)
GCTTGAACTGTTGGACTACCATCATCATGTTATGGCACCGCTGTACCCCA
CCTTCTGTGCGTCTGCTAGTTTTGGCAACGATAAACTGCCCTTCTATGGG
TATCATGAGTGGTTGGTATTTTTGACAGCATGCCAGGGTGGCTGGGAACG
GCCCTTGTGTTGCTTCCAGACCAGTAAAATGCCGGGTGACAGCATGCTGC
TGAAACCATTCGCATGTTGCTTCCAGACCTGTACAGTGCACCAAATGCCC
CTTGTGTTGCCCACAGCCAATCTTTATCAAAGATGCTCAGAAACATGCAG
AGGGGCAGAAAGTGGAGTTGAACTGGCGGCACAGCAGTAAAATACAAGTA
GCCTTTTTGGCGATCATTTGGCAACACGCGAAGGTGTTGCTGCTGCTTGG
TTCTGGAAGTTTCAAAGAAGGATGGATGTGTTTTCAAGAGCTTCGAGGCC
CTGCTTAATGCCAAATGTCTGTTCCAGGAATAAATTGGTTCCCCATAAAA
GTGCAACTGTGCGGTTGTATTACCCTTAAAGATTCAGCACGAACACAATT
GAGTGGTTGCATCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig850:366157..366720+

>mRNA_H-akashiwo_Contig850.11.1 ID=mRNA_H-akashiwo_Contig850.11.1|Name=mRNA_H-akashiwo_Contig850.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig850:366157..366720+ (Heterosigma akashiwo CCMP452)
ATGGCACCGCTGTACCCCACCTTCTGTGCGTCTGCTAGTTTTGGCAACGA
TAAACTGCCCTTCTATGGGTATCATGAGTGGTTGGTATTTTTGACAGCAT
GCCAGGGTGGCTGGGAACGGCCCTTGTGTTGCTTCCAGACCAGTAAAATG
CCGGGTGACAGCATGCTGCTGAAACCATTCGCATGTTGCTTCCAGACCTG
TACAGTGCACCAAATGCCCCTTGTGTTGCCCACAGCCAATCTTTATCAAA
GATGCTCAGAAACATGCAGAGGGGCAGAAAGTGGAGTTGAACTGGCGGCA
CAGCAGTAA
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