mRNA_H-akashiwo_Contig837.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig837.4.1
Unique NamemRNA_H-akashiwo_Contig837.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig837.4.1 vs. uniprot
Match: A0A7S4D5M9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5M9_HETAK)

HSP 1 Score: 155 bits (392), Expect = 9.670e-43
Identity = 91/138 (65.94%), Postives = 103/138 (74.64%), Query Frame = 2 
Query:  356 RISLCAATGQTAAVLRGLSGWQESTEAGCGGSV-MGKVKQFFQRAEGLLSGKEQ-LPKEVLVAKICTDVASWVLQRNFEVHCSTT---QQVNDDST-TTRNFGMVLFDEKNDCFYLRCTNMTTPPAQQPKLATTNIIV 751
            RISLC ATGQTAA LRGL+ WQE TEAG GGSV MGKVKQFFQRAEG LSGKEQ L KE   +K C+DVA WVLQRNFEVHCSTT   QQVNDD   TTRNFG+VLFDE+ +C      N+    ++Q    +++IIV
Sbjct:    1 RISLCGATGQTAATLRGLNAWQE-TEAGRGGSVVMGKVKQFFQRAEGFLSGKEQQLSKEDFFSKTCSDVALWVLQRNFEVHCSTTEQRQQVNDDDAITTRNFGIVLFDEEKNC---PPRNLEFDKSEQQTTLSSSIIV 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig837.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D5M9_HETAK9.670e-4365.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig837contigH-akashiwo_Contig837:216894..218003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1110
Hectar predicted targeting categoryother localisation
Exons1
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.8524165-UTR-H-akashiwo_Contig837:216893..2170111681388004.8524165-UTR-H-akashiwo_Contig837:216893..217011Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig837 216894..217011 +
1681388004.8756897-UTR-H-akashiwo_Contig837:217719..2180031681388004.8756897-UTR-H-akashiwo_Contig837:217719..218003Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig837 217720..218003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.866267-CDS-H-akashiwo_Contig837:217011..2177191681388004.866267-CDS-H-akashiwo_Contig837:217011..217719Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig837 217012..217719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig837.4.1prot_H-akashiwo_Contig837.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig837 217012..217719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig837.4.1

>prot_H-akashiwo_Contig837.4.1 ID=prot_H-akashiwo_Contig837.4.1|Name=mRNA_H-akashiwo_Contig837.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=236bp
MQHNVPKRVLGRIMAEKRDSTGRFVGFDQALPFLASRQEWHDLFVFASCC
REFRVAACKFARLQVPQHDIIQTRDFPRERISLCAATGQTAAVLRGLSGW
QESTEAGCGGSVMGKVKQFFQRAEGLLSGKEQLPKEVLVAKICTDVASWV
LQRNFEVHCSTTQQVNDDSTTTRNFGMVLFDEKNDCFYLRCTNMTTPPAQ
QPKLATTNIIVDQYSTGPFHFSNRKRFSPFEDFSF*
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mRNA from alignment at H-akashiwo_Contig837:216894..218003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig837.4.1 ID=mRNA_H-akashiwo_Contig837.4.1|Name=mRNA_H-akashiwo_Contig837.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1110bp|location=Sequence derived from alignment at H-akashiwo_Contig837:216894..218003+ (Heterosigma akashiwo CCMP452)
ATCCACATCCACCACCTACCACCACCACCCACCACCAAAATCGGCAGCGC
CATAATAGGCATCCACCACCTTGCTATTAGCAGCAGACGGGCAACCGAGG
AGGAGGAGTGTATAAGTTATGCAACATAACGTGCCCAAACGCGTTCTTGG
TCGCATCATGGCAGAAAAGCGCGACAGCACCGGTCGTTTTGTTGGTTTCG
ATCAAGCACTGCCCTTTCTGGCTTCTCGACAGGAGTGGCACGATTTATTC
GTTTTTGCTTCTTGCTGCAGGGAGTTTCGGGTTGCTGCTTGCAAATTCGC
GAGGCTTCAAGTCCCACAGCATGACATAATTCAAACTCGTGACTTTCCAA
GAGAGAGAATTTCGCTGTGTGCTGCAACGGGCCAGACTGCCGCGGTACTG
CGCGGGCTTAGTGGCTGGCAGGAAAGTACTGAAGCAGGATGTGGTGGCTC
GGTCATGGGCAAGGTGAAACAGTTTTTCCAAAGGGCGGAGGGCCTTCTTT
CAGGAAAGGAACAACTCCCAAAGGAAGTTTTGGTTGCTAAAATATGCACT
GACGTGGCTTCGTGGGTCCTTCAGAGAAACTTCGAGGTGCATTGTTCAAC
CACTCAACAAGTGAACGACGACAGTACAACTACAAGAAATTTTGGTATGG
TTCTGTTCGACGAGAAAAATGATTGTTTCTATTTGCGATGCACAAACATG
ACCACTCCTCCTGCTCAGCAACCAAAGTTAGCCACAACAAACATTATCGT
TGACCAGTACAGCACAGGACCGTTTCACTTTTCCAACAGGAAGAGATTCT
CTCCATTTGAAGATTTCTCCTTTTGATCCCCCCACCCCGATTCTGCTTTG
CTGCTGAATGCGCGCCTTTTTTTTCTGCCAGGAGTTAAAAGACAGGATAA
TGGGTTGACGACCACATTGTGCTAAGGGTTTGCTTGTTGTATCATCAGTG
GAGGAGGTGTGATCATTGTTGTTGTTGTTGTTGTTATTGTATTCACTAAA
AATAAAGTAGATTCTCCTGGTGCTTCTTGTCTGTCTGCTCGATGGTTACT
GAGCTTGTAGTACGTAGTATAGTGGAACTGGCTAGATGATAGATATACAG
CAGAAGTCCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig837:216894..218003+

>mRNA_H-akashiwo_Contig837.4.1 ID=mRNA_H-akashiwo_Contig837.4.1|Name=mRNA_H-akashiwo_Contig837.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=708bp|location=Sequence derived from alignment at H-akashiwo_Contig837:216894..218003+ (Heterosigma akashiwo CCMP452)
ATGCAACATAACGTGCCCAAACGCGTTCTTGGTCGCATCATGGCAGAAAA
GCGCGACAGCACCGGTCGTTTTGTTGGTTTCGATCAAGCACTGCCCTTTC
TGGCTTCTCGACAGGAGTGGCACGATTTATTCGTTTTTGCTTCTTGCTGC
AGGGAGTTTCGGGTTGCTGCTTGCAAATTCGCGAGGCTTCAAGTCCCACA
GCATGACATAATTCAAACTCGTGACTTTCCAAGAGAGAGAATTTCGCTGT
GTGCTGCAACGGGCCAGACTGCCGCGGTACTGCGCGGGCTTAGTGGCTGG
CAGGAAAGTACTGAAGCAGGATGTGGTGGCTCGGTCATGGGCAAGGTGAA
ACAGTTTTTCCAAAGGGCGGAGGGCCTTCTTTCAGGAAAGGAACAACTCC
CAAAGGAAGTTTTGGTTGCTAAAATATGCACTGACGTGGCTTCGTGGGTC
CTTCAGAGAAACTTCGAGGTGCATTGTTCAACCACTCAACAAGTGAACGA
CGACAGTACAACTACAAGAAATTTTGGTATGGTTCTGTTCGACGAGAAAA
ATGATTGTTTCTATTTGCGATGCACAAACATGACCACTCCTCCTGCTCAG
CAACCAAAGTTAGCCACAACAAACATTATCGTTGACCAGTACAGCACAGG
ACCGTTTCACTTTTCCAACAGGAAGAGATTCTCTCCATTTGAAGATTTCT
CCTTTTGA
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