mRNA_H-akashiwo_Contig836.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig836.4.1
Unique NamemRNA_H-akashiwo_Contig836.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig836.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig836contigH-akashiwo_Contig836:182072..182406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size296
Hectar predicted targeting categorysignal anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.5973973-UTR-H-akashiwo_Contig836:182071..1821651681388004.5973973-UTR-H-akashiwo_Contig836:182071..182165Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig836 182072..182165 +
1681388004.6298952-UTR-H-akashiwo_Contig836:182378..1824061681388004.6298952-UTR-H-akashiwo_Contig836:182378..182406Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig836 182379..182406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.6081245-CDS-H-akashiwo_Contig836:182165..1822111681388004.6081245-CDS-H-akashiwo_Contig836:182165..182211Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig836 182166..182211 +
1681388004.6201508-CDS-H-akashiwo_Contig836:182250..1823781681388004.6201508-CDS-H-akashiwo_Contig836:182250..182378Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig836 182251..182378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig836.4.1prot_H-akashiwo_Contig836.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig836 182166..182378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig836.4.1

>prot_H-akashiwo_Contig836.4.1 ID=prot_H-akashiwo_Contig836.4.1|Name=mRNA_H-akashiwo_Contig836.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
MLRLCCRFVFYTSIPLLLLLLLLLASLLLLLLHTPAILTLIHDRVSFLRS
TSFGIFI*
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mRNA from alignment at H-akashiwo_Contig836:182072..182406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig836.4.1 ID=mRNA_H-akashiwo_Contig836.4.1|Name=mRNA_H-akashiwo_Contig836.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=335bp|location=Sequence derived from alignment at H-akashiwo_Contig836:182072..182406+ (Heterosigma akashiwo CCMP452)
TGCAAGAAGACATTGGTTGTGGCTCAGGAAGTGAGAGGAGCACATTGCAT
GGGACATACGTAGAAAGAAAAAATGGTAAGTTTCTGGGGAAAAAATGTTG
AGATTATGCTGCCGTTTCGTGTTTTATACTAGTATTCCTTGTTAACTTCT
GCAGTACAGAAGAAGTCAAGGACGGTGAGTGTTGTTGTTGTTGTTGTTGT
TGTTGGCATCATTGCTGTTACTCTTGCTGCACACACCTGCCATACTTACG
CTTATTCATGATAGAGTCTCGTTTCTGCGTAGTACATCTTTTGGTATTTT
TATATAGTAGAGTGATAAAAAAAACTTGTGTACCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig836:182072..182406+

>mRNA_H-akashiwo_Contig836.4.1 ID=mRNA_H-akashiwo_Contig836.4.1|Name=mRNA_H-akashiwo_Contig836.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig836:182072..182406+ (Heterosigma akashiwo CCMP452)
ATGTTGAGATTATGCTGCCGTTTCGTGTTTTATACTAGTATTCCTTTGTT
GTTGTTGTTGTTGTTGTTGTTGGCATCATTGCTGTTACTCTTGCTGCACA
CACCTGCCATACTTACGCTTATTCATGATAGAGTCTCGTTTCTGCGTAGT
ACATCTTTTGGTATTTTTATATAG
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