mRNA_H-akashiwo_Contig834.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig834.9.1
Unique NamemRNA_H-akashiwo_Contig834.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 682 bits (1760), Expect = 7.780e-238
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 1
Query:   49 YQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            YQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL
Sbjct:  644 YQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 981          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 268 bits (686), Expect = 2.200e-84
Identity = 140/337 (41.54%), Postives = 213/337 (63.20%), Query Frame = 1
Query:   58 LNGFLLQQGYTRNGYDSCVYSKVSSTGGKTL-ISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            L+  L   G+ R+G++SC+Y  +   GG  L ++VYVDD+V++ S ++ +S  K++++  Y+++D GE+  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +   +P      A     RYL  T+ + + LGG L L A++D+DFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR+AV D+MWL+ LLE +G  Q    P+ EDN AC+ WAND  V+K  RH HVSYH  KE V    I + Y+ T  Q+AD+ TK L
Sbjct:    3 LHDHLESLGFKRSGHESCLY--IHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELS--DANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKAL 335          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 212 bits (540), Expect = 6.060e-62
Identity = 116/342 (33.92%), Postives = 193/342 (56.43%), Query Frame = 1
Query:   52 QNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINT--DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            Q +N  L + G+     D C+Y      GG+  I +YVDD+++AS D + ++ +K  I   + + D+G +  ILGI+V  D   +T+ L Q  +I++  ++F      P   P++  + V      +T   ++    K FRS++G++++LA  T P++A ++  LS+   +P      A+  ++RYL  T + GV  GG ++  L AY+DAD+ S+R   RS SG  + L  +P++W +  Q  V  +TTEAEY++L   V + MW + LL++LG KQ G   I+EDN+  I  A +       +HI + YHY +E + + +IE+KY++TK Q+AD  TK L
Sbjct:   35 QTINTRLAEIGFVSTDADPCIYVS-DMQGGRCFICLYVDDLLIASPDMATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.850e-58
Identity = 112/342 (32.75%), Postives = 196/342 (57.31%), Query Frame = 1
Query:   52 QNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTD--TSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            + ++  L   G+     D CVY++    G + ++ +YVDD+++AS  K+ ++ +K  I+  + + D+G    ILGI++  D   RT+ +SQ ++ E   +KF   + +P   P+  G+ +    +  T    +  ++K +RSLVG++ +LA  T P+++ ++  LS+   +P      A   ++RYL  T+D G+   G L   L AY+DA++   R   RS SG  + L  +P++W S  Q  V  ++TEAEY++L + V + +W++RLL+ +G +Q G + IYEDN+  +  A +       +HI + YH+ +E V S E+E++YVDTK+Q+AD  TK L
Sbjct:   73 ETIDKHLKSMGFEPADADPCVYTRGEGEG-ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGL 413          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A6A3JY23_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JY23_9STRA)

HSP 1 Score: 211 bits (538), Expect = 7.810e-58
Identity = 116/342 (33.92%), Postives = 193/342 (56.43%), Query Frame = 1
Query:   52 QNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINT--DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            Q +N  L + G+     D C+Y      GG+  I +YVDD+++AS D + ++ +K  I   + + D+G +  ILGI+V  D   +T+ L Q  +I++  ++F      P   P++  + V      +T   ++    K FRS++G++++LA  T P++A ++  LS+   +P      A+  ++RYL  T + GV  GG ++  L AY+DAD+ S+R   RS SG  + L  +P++W +  Q  V  +TTEAEY++L   V + MW + LL++LG KQ G   I+EDN+  I  A +       +HI + YHY +E + + +IE+KY++TK Q+AD  TK L
Sbjct:  607 QTINTRLAEIGFVCTDADPCIYVS-DMQGGRCFICLYVDDLLIASPDMATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 947          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A6A3L5P5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L5P5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.030e-56
Identity = 111/336 (33.04%), Postives = 188/336 (55.95%), Query Frame = 1
Query:   70 LLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTD--TSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            L   G+     D CVY++      + ++ +YVDD+++AS  K+ ++ +K  I+  + + D+G    ILGI++  D   RT+ + Q ++ E   +KF   + +P   P+  G+ +    +  T   +   ++K +RSLVG++ +LA  T P+++ ++  LS+   +P      A   ++RYL  T+D G+   G L   L AY+DAD+   R   RS SG  + L  +P++W S  Q  V  ++TEAEY++L + V + +W++RLL+ +G +Q G   IYEDN+  +T A +       +HI + YH+  E V S E+E +YV TK+Q+AD  TK L
Sbjct:   79 LKSMGFEPADADPCVYTRGEGED-ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGIIQKAYTESIIKKFGQENAKPCLAPLEPGVQLTKGDEPQTEEDIDKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMTLAKNVGYQARTKHIDIRYHFIPEKVVSNEVEQEYVATKNQLADFMTKGL 413          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.100e-55
Identity = 110/346 (31.79%), Postives = 192/346 (55.49%), Query Frame = 1
Query:   52 QNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVN------INTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            + ++  +   G+     D CVY++      + ++ +YVDD+++AS  K+ ++ +K  I+  + + DMG    ILGI++  D   RT+ +SQ ++ E   +KF   + +P   P+  G+ +       I  D ++     ++K +RSLVG++ +LA  T P+++ ++  LS+   +P      A   ++RYL  T+D G+   G L   L AY+DAD+   R   RS SG  + +  +P++W S  Q  V  ++TEAEY++L + V + +W++RLL  +G +Q G    YEDN+  +  A +       +HI + YH+ +E V   E+E++YVDTK+Q+AD  TK L
Sbjct:   42 ETIDKHIKSMGFEPADADPCVYTRGEGED-ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQIEEDKAK----MKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMMCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLNDIGAEQVGATVRYEDNQGAMALAKNVGYQAHTKHIDIRYHFIREKVVINEVELEYVDTKNQLADFMTKGL 382          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 206 bits (523), Expect = 1.650e-55
Identity = 121/343 (35.28%), Postives = 193/343 (56.27%), Query Frame = 1
Query:   58 LNGFLLQQGYTRNGYDSCVYSK-VSSTGGK---TLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN---LTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            L+ FL   GY + G DSC+Y K V    GK    ++S++VDDI+  S+D   L   K AI   + V D+GE+  ILG+ ++RDR +RT+T+SQ  ++E   ++F +   +PV+ P+  G   +  +D  R  +  E +K   ++G + ++   T P++A ++  LSK  T PS         +LRY+  T + G+T         LT Y+DAD+ ++    RS SG+   +    I W S+ Q CV+R++TEAEY++L  A  + +WL+RLLE++G KQ     + EDN+A I  + +       +HI V++H+ +E VQ K I+V Y  T   +AD+ TK L
Sbjct:  996 LDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQK---IIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEMLADILTKGL 1335          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A6A4DYE5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DYE5_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.320e-55
Identity = 111/342 (32.46%), Postives = 189/342 (55.26%), Query Frame = 1
Query:   52 QNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTD--TSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            + ++  L   G+     D CVY++      + ++ +YVDD+++AS  K+ +  +K  I+  + + D+G    ILGI++  D   RT+++SQ +  E   EKF   + +P   P+  G+      +  T    +   +K +RSLVG++ +LA    P+++ ++  LS+   +P      A   ++RYL  T D G+   G L   L AY+DA++   R   RS SG  + L  +P++W S  Q  V  ++TEAEY++L + V + +W++RLL+ +G +Q G   IYEDN+  +  A +       +HI + YH+ +E V S E+E++YVDTK+Q+AD  TK L
Sbjct:   73 ETIDKHLKSMGFEPADADPCVYTRGEGED-ECIVCLYVDDMLIASRQKAVIVPVKAGIAEKFRIKDLGRARFILGIEIDYDLERRTLSISQKACTESIIEKFGQENAKPCLTPLEPGVQFTEGDEPQTEENKTKMMSKPYRSLVGSLIYLACGMRPDISVAVAKLSRFLENPCEKHWDAGIAVVRYLLKTNDVGIVCDGLLGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYHARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTKGL 413          
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.970e-55
Identity = 110/342 (32.16%), Postives = 193/342 (56.43%), Query Frame = 1
Query:   52 QNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTD--TSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLT--AYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 1062
            + ++  L   G+     D CVY++    G + ++ +YVDD+++AS  K+ ++ +K  I+  + + D+G    I+GI++  D   RT+ +SQ ++ E   +KF   + +P   P+  G+ +    +  T    +  ++K +RSLVG++ +LA  T P+++ ++  LS+   +P      A   ++RYL  T+D G+   G L     AY+DAD+   R   RS SG  + L  +P++W S  Q  V  ++TEAEY++L + V + +W++RLL+ +G +Q G   IYEDN+  +  A +       +HI + YH+ +E V S E+E++YVDTK+Q+A   TK L
Sbjct:  234 ETIDKHLKSTGFEPADADPCVYTRGEGEG-ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGL 574          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig834.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y1P1_HETAK7.780e-238100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DD78_HETAK2.200e-8441.54Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A6A3JMT1_9STRA6.060e-6233.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA1.850e-5832.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3JY23_9STRA7.810e-5833.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3L5P5_9STRA3.030e-5633.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4F359_9STRA1.100e-5531.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT1.650e-5535.28Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6A4DYE5_9STRA2.320e-5532.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q908_9STRA2.970e-5532.16Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig834contigH-akashiwo_Contig834:429099..430160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1064
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.19e-51
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size1062
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.254104-CDS-H-akashiwo_Contig834:429098..4301601681388004.254104-CDS-H-akashiwo_Contig834:429098..430160Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig834 429099..430160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig834.9.1prot_H-akashiwo_Contig834.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig834 429099..430160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig834.9.1

>prot_H-akashiwo_Contig834.9.1 ID=prot_H-akashiwo_Contig834.9.1|Name=mRNA_H-akashiwo_Contig834.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=354bp
TQKVTIWVKASSKMLVYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTL
ISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRT
ARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTF
EAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLR
YLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIW
SSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQGCVPIYEDN
KACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVF
TKPL
back to top

mRNA from alignment at H-akashiwo_Contig834:429099..430160-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig834.9.1 ID=mRNA_H-akashiwo_Contig834.9.1|Name=mRNA_H-akashiwo_Contig834.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1062bp|location=Sequence derived from alignment at H-akashiwo_Contig834:429099..430160- (Heterosigma akashiwo CCMP452)
ACTCAAAAAGTCACTATATGGGTTAAAGCAAGCTCCAAAATGTTGGTATA TCAGAATCTTAATGGTTTTCTTCTTCAGCAAGGTTACACCAGGAATGGCT ATGACAGCTGTGTGTATAGTAAGGTGTCATCTACAGGGGGGAAGACACTG ATTTCAGTGTATGTAGATGACATAGTTCTGGCCTCATCTGATAAGTCAGA GCTTTCCAGGATCAAGAAGGCAATTTCTCTTGGCTATAATGTGTCTGACA TGGGGGAAATTGAGAGTATCTTGGGCATCAAAGTCCAAAGGGACAGGACT GCTAGAACTATCACTTTGTCACAACACAGCTTCATTGAGGAAGCCTGTGA AAAGTTTCAGGTACGCAGCTATGAGCCAGTAACAAATCCTGTCAACAAAG GCATTGATGTTAACATCAACACTGACACATCCAGAAGGCTTAGCACCTTT GAGGCCAAGAAATTCAGATCCTTGGTTGGTACTGTAAATTGGTTGGCTCT TTGGACATTTCCAGAAGTGGCCTACTCAATCCACACGCTGTCTAAAAGAT TTACTTCTCCATCTGCAAACTGCTTGGCAGCTTCATACCATCTTCTGAGA TATCTCTGGTGGACTGAAGATAAGGGTGTAACTCTAGGTGGCCCTCTTAA TCTAACTGCATATGCAGATGCTGATTTCTGCAGTGAAAGGCATAAAGGGA GAAGCAGATCTGGTTTTGCTATCTTCTTGGGATTCTCTCCTATCATTTGG TCATCCAGGATGCAGCATTGTGTCACCAGAAACACAACTGAGGCTGAATA TGTAAGTCTCAGGAATGCTGTTACAGATGTGATGTGGCTAAAAAGGCTTT TGGAGTCTCTGGGGTACAAGCAGGGTTGTGTACCTATCTATGAGGACAAT AAAGCCTGCATTACTTGGGCTAATGATGAGACTGTTTCCAAGTCAGCACG TCACATTCATGTATCATATCACTACACCAAGGAGATGGTGCAGTCCAAGG AAATTGAAGTTAAATATGTGGACACAAAGCACCAAATAGCAGATGTTTTC ACAAAGCCTTTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig834:429099..430160-

>mRNA_H-akashiwo_Contig834.9.1 ID=mRNA_H-akashiwo_Contig834.9.1|Name=mRNA_H-akashiwo_Contig834.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1062bp|location=Sequence derived from alignment at H-akashiwo_Contig834:429099..430160- (Heterosigma akashiwo CCMP452)
ACTCAAAAAGTCACTATATGGGTTAAAGCAAGCTCCAAAATGTTGGTATA
TCAGAATCTTAATGGTTTTCTTCTTCAGCAAGGTTACACCAGGAATGGCT
ATGACAGCTGTGTGTATAGTAAGGTGTCATCTACAGGGGGGAAGACACTG
ATTTCAGTGTATGTAGATGACATAGTTCTGGCCTCATCTGATAAGTCAGA
GCTTTCCAGGATCAAGAAGGCAATTTCTCTTGGCTATAATGTGTCTGACA
TGGGGGAAATTGAGAGTATCTTGGGCATCAAAGTCCAAAGGGACAGGACT
GCTAGAACTATCACTTTGTCACAACACAGCTTCATTGAGGAAGCCTGTGA
AAAGTTTCAGGTACGCAGCTATGAGCCAGTAACAAATCCTGTCAACAAAG
GCATTGATGTTAACATCAACACTGACACATCCAGAAGGCTTAGCACCTTT
GAGGCCAAGAAATTCAGATCCTTGGTTGGTACTGTAAATTGGTTGGCTCT
TTGGACATTTCCAGAAGTGGCCTACTCAATCCACACGCTGTCTAAAAGAT
TTACTTCTCCATCTGCAAACTGCTTGGCAGCTTCATACCATCTTCTGAGA
TATCTCTGGTGGACTGAAGATAAGGGTGTAACTCTAGGTGGCCCTCTTAA
TCTAACTGCATATGCAGATGCTGATTTCTGCAGTGAAAGGCATAAAGGGA
GAAGCAGATCTGGTTTTGCTATCTTCTTGGGATTCTCTCCTATCATTTGG
TCATCCAGGATGCAGCATTGTGTCACCAGAAACACAACTGAGGCTGAATA
TGTAAGTCTCAGGAATGCTGTTACAGATGTGATGTGGCTAAAAAGGCTTT
TGGAGTCTCTGGGGTACAAGCAGGGTTGTGTACCTATCTATGAGGACAAT
AAAGCCTGCATTACTTGGGCTAATGATGAGACTGTTTCCAAGTCAGCACG
TCACATTCATGTATCATATCACTACACCAAGGAGATGGTGCAGTCCAAGG
AAATTGAAGTTAAATATGTGGACACAAAGCACCAAATAGCAGATGTTTTC
ACAAAGCCTTTG
back to top