mRNA_H-akashiwo_Contig834.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig834.8.1
Unique NamemRNA_H-akashiwo_Contig834.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig834.8.1 vs. uniprot
Match: A0A7S3Y5V9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5V9_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 1.970e-11
Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:   17 FMTVLVIISWLIMFFQEDGAAIYAVDFSLVLVFAAEVLWKSLAFGFRTGPRPFLKS 184
            FMT++V++SWLIMF ++ G  I  ++  ++++F+AEVLWKS AFGF +GP+ FLKS
Sbjct:  214 FMTLVVVVSWLIMFDEKGGTGIEILEIIIMILFSAEVLWKSTAFGFYSGPQAFLKS 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig834.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y5V9_HETAK1.970e-1153.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig834contigH-akashiwo_Contig834:404285..404967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388004.1289203-CDS-H-akashiwo_Contig834:404284..4044251681388004.1289203-CDS-H-akashiwo_Contig834:404284..404425Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig834 404285..404425 -
1681388004.1402488-CDS-H-akashiwo_Contig834:404922..4049671681388004.1402488-CDS-H-akashiwo_Contig834:404922..404967Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig834 404923..404967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig834.8.1prot_H-akashiwo_Contig834.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig834 404285..404967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig834.8.1

>prot_H-akashiwo_Contig834.8.1 ID=prot_H-akashiwo_Contig834.8.1|Name=mRNA_H-akashiwo_Contig834.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=62bp
QEDKQVHDSSSDYFMADYVFPGRWGCYICSRLFTGARLCSRGVVEKPCFW
VSHRPQAFLKV*
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mRNA from alignment at H-akashiwo_Contig834:404285..404967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig834.8.1 ID=mRNA_H-akashiwo_Contig834.8.1|Name=mRNA_H-akashiwo_Contig834.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=683bp|location=Sequence derived from alignment at H-akashiwo_Contig834:404285..404967- (Heterosigma akashiwo CCMP452)
CAAGAAGACAAGCAGGTTCATGACAGTTCTAGTGATTATTTCATGGTAAG
AAGATATGACAAGCTGGTTTGCTGTGATCATTTTTAATGTATCATCATCA
GAAATGAAATGGATTTGTTCAGCACCATCGAGCTGTCCCAGAACTTATTT
AATATTAAGAAGCGTTTGTTGCAGAAAATAGCAGGGGAGCTGATTGTTTA
CAAAGAGTAGCCATTGGAAACTCATGCCAATTGTTTATCAAGACTAGCTA
TTGGAAACTCGTGATGTGCTCCTGGAACAGCTGTCGTTTTGAGTATGATA
ATAAAATAAGGGGGAGGGGGGGTACTTGGTGGGGTCGATGAATGCTGCAG
AAATGATTGCTTCATGTTTTTTTAGACTTCATTCACCATTGCTGTCTACT
GCAATGCAATACCTTCTTGCCGGGGCTCTGATCCATTCCATTTGTAATAA
ATATTCATATATATGTCCTCATGCCACTCAGTATTATACAAGTAATTAAA
TGCATGTGTCATACTTTCTTACTTTTCCTCACTTTAATACAGGCTGATTA
TGTTTTTCCAGGAAGATGGGGCTGCTATATATGCAGTAGACTTTTCACTG
GTGCTCGTCTTTGCAGCAGAGGTGTTGTGGAAAAGCCTTGCTTTTGGGTT
TCGCACCGGCCCCAGGCCTTTCTTAAAGTCTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig834:404285..404967-

>mRNA_H-akashiwo_Contig834.8.1 ID=mRNA_H-akashiwo_Contig834.8.1|Name=mRNA_H-akashiwo_Contig834.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=186bp|location=Sequence derived from alignment at H-akashiwo_Contig834:404285..404967- (Heterosigma akashiwo CCMP452)
CAAGAAGACAAGCAGGTTCATGACAGTTCTAGTGATTATTTCATGGCTGA
TTATGTTTTTCCAGGAAGATGGGGCTGCTATATATGCAGTAGACTTTTCA
CTGGTGCTCGTCTTTGCAGCAGAGGTGTTGTGGAAAAGCCTTGCTTTTGG
GTTTCGCACCGGCCCCAGGCCTTTCTTAAAGTCTAG
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