mRNA_H-akashiwo_Contig831.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig831.8.1
Unique NamemRNA_H-akashiwo_Contig831.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig831.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig831contigH-akashiwo_Contig831:159658..163540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size209
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388002.724876-CDS-H-akashiwo_Contig831:159657..1597161681388002.724876-CDS-H-akashiwo_Contig831:159657..159716Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig831 159658..159716 +
1681388002.7353132-CDS-H-akashiwo_Contig831:163392..1635401681388002.7353132-CDS-H-akashiwo_Contig831:163392..163540Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig831 163393..163540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig831.8.1prot_H-akashiwo_Contig831.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig831 159658..163540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig831.8.1

>prot_H-akashiwo_Contig831.8.1 ID=prot_H-akashiwo_Contig831.8.1|Name=mRNA_H-akashiwo_Contig831.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=69bp
APRPSPAARTPPRLSPGATRKRILHKSEISLKGCWQEENEWKEKDGGAVA
VLAYFNYILATIKDEYHYC
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mRNA from alignment at H-akashiwo_Contig831:159658..163540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig831.8.1 ID=mRNA_H-akashiwo_Contig831.8.1|Name=mRNA_H-akashiwo_Contig831.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3883bp|location=Sequence derived from alignment at H-akashiwo_Contig831:159658..163540+ (Heterosigma akashiwo CCMP452)
GCGCCGCGGCCAAGCCCCGCAGCACGGACCCCGCCGCGGCTAAGCCCAGG
GGCCACCAGGTGCGATCCCCCCCCGCCTGGCCTGGCCGTTGTGGTGGTGG
TGCGCCCGCAGAAGTAGGGCCTGCTGCTTGCTGCTGTCTGCGACTCGGTC
CTCTTCCGACTGCCCCCCCTCTCCTGTTCTTGCCCGTGCAAATACATGAA
CACTTATATTATACGTATGTGATAGTAAGGGATGGCGCACAATTAAATTT
GCAGTTATTAACGGCATATGCCGTTCGGGGGGTGGGTGGGTGGGGTAGCC
CATGCCGTTTAGGAACTGGGCAATTTCCGTTGCACAGACGTCTGGCCGGA
CCGGATGGGTGAAGAGTGCAACTTTTACGCTGATATAGTAACGGGTTCGA
TTCTTGACGGAAGGATTTCATCTAAAGTTCCTCTTTATTGCGCTTCCGAT
GTGTTTTCCGTCACGGAATTCGAATTTGAGGGTAGTAGTAGAAGAAGACA
ATTTGAGAAGTGGAAGAAGTTCAAGGTAGTGCTATCATCATGTATCATGT
CGATGTCAAGGAGGAAGAATAAGAATGCCTTTTAGTCAGTTGGCTGGCGT
TATAGAAGTATTCGAAATTATTTTTATTATTTCAAAATTACCATTTTAAT
GTAAAAAAATATTTGGATTGGAAACGATATTTGATCTGGAAAAGGTTTCA
AGGGAAAACAACATAGAACGTTGTGAATATTTCCCCAGGAATTCATTCTT
TTTTTGTTCGATAGATATTTCACAAAAATAAATCTTTTATTTTTTTATTC
ATTATCTAAATTTATATAATTCCTAACTTCTAATTCTTATCACAGGTTGT
TTCGTCGTCGTTGTCGTCGTGGTGTGGGTGGTGCTGCTGCTGGTGCTGGT
GCTGCTGCTGCTGTTTTTTTTTTATCGTGTTGTTATCAAGTGCCaAAAAC
CAACCAACCAACCAACCATGCCATTTGCAGTAGTCAACAAGTCTCGTTAC
CAGAGCTTAAAAGAAAAGTATTGTTCGATAGGTATGCCTTCTACCTTCAA
TGATCATGACTATCCAGCAAGAAGTTATTTGATAGGTGACAGTGTGCCCT
CTCCTACTGAAAACCAGTTTCCAGCTACCGAAGTATTAATATCTGTGTTC
TTAGTAGACACCACAGAGTATTATATTGCTAGTATACGCTAGCAGCCCGT
GCAGACAGGAGGATTATTTATCTTAAGTCTTACACAAGGGTTGCAGGCGA
GACTGAGAGTCGAGCCTGCATCTGCTCCTGCTACTTGAATATAGTTGTGG
TGTAGTGTATAAGGAGAAGAGGAGTCTTCCCGCACTATACTACTTCTTCC
TACAACTACTATACTGACCAATACTTACACGCCAAGTGTGGGATTTCTCC
CCAGCTATACGCGCATACGCAAGTAGCCAATATCATGGTGATGAACCAGT
GTAGGCCATTTTCCCTCCAAAACTGGCATTAGGCTGTACACATAGTCATC
AGCGGCCGGTGCCGCCTTAGGCCTCCGGgcGCCTCCGGGCAGTCCGGGGC
TGGCCCATCGGGCGGTGCTTGTACTCAGGAATTCGCACATCGATACTCCC
CCTCAGCGAGTACTTCTGTCAGGAAGGCTGAGCTGCACTGCTGAGAGATG
CTGAGTACAACACTGTCACCATGTGGCTGCTCCTGCTCATGGTACCAGGT
GGCAGGATGAGAGCACCAACATTGTGACTGCTGGCAGGATATCGTCCCCC
CCCTGCAAAGGCAGATCTCACTGGAAGATCATTTCACTCCCCTGAATCAG
TCCATCAAGGAGACACATCATCAGCACAGAGACACAAGAAGCATAAATGT
GGCTTAAGCCCCTGGGCACCCAGGTCATGAATCATTGCTGTTTCTTGGTG
TATACTACAGCGAATATCATCATGGTGCCATCTTCAGTGGTCCTGTGGCG
GTCGGTCAGTGGACATGTGATGTCGACTGATGCTGAAAGCCGCAGCTGGT
TGGATAAAAGGTGAAAGTCTCAGGGTCATGCTCCCCCTGATCAAGTCATC
CATGGCCGGCCCATGTCTTCGGCCATCCTTGACTCGTCGTTAGAGCAGAG
AAAAACTTGGTCACCGTCCTTGGCATCGCCTTCGTCGATAACTTCTAACA
GTTAGCACACCCGCCTTCATGGCGAGCTCCACTCGTTGTGAGTTCAGTGC
CCCTCATGTATCCATCGTCGAACACTTGACCATACTTTGATAGGCCGGTT
GCACGCCACCGCAGAGGCAGTACCAGTGTAGTTAAGCTTGCATGGCCGTG
AGGTCGCCTCATCAGTGAGCATTGGCTTTACTGAGTGCCTAGGATCAACT
TTAGAGCTTCGAAACCGCGATTGCTCTCGTCCAACAGCTATACCCCCTTT
ACTCGGAGATGCCCAGGCAATTCCTCTGGGGCGATTGCGCTGGCAATCTC
TACCCGAGGAGTCTCGCTTGCAATATTAATATCTGTGTTCTTAGTAGACA
CCACAGAGTATTATATTGCTAGTATACGCTAGCAGCCCGTGCAGACAGGA
GGATTATTTATCTTAAGTCTTACACAAGGGTTGCAGGCGAGACTGAGAGT
CGAGCCTGCATCTGCTCCTGCTACTTGAATATAGTTGTGGTGTAGTGTAT
AAGGAGAAGAGGAGTCTTCCGCACTATACTACTTCTTCCTACAACTACTA
TACTGACCAATACTTACACGCCAAGTGTGGGATTTCTCCCCAGCTATACG
CGCATACGCAAGTAGCCAATATCATGGTGATGAACCAGTGTAGGCCATTT
TCCCTCCAAAACTGGCATTAGGCTGTACACATAGTCATCAGCGGCCGGTG
CCGCTTTAGGCCTCCGGCGCCCCGGCAGTCCGGGGCTGGCCCATCGGGCG
GTGCTTGTACTCAGGAATTCGCACATCGATACGAAGATTAAGCTCTATTG
GTAATGCATTATCCTGTTGTCCATTCAGCTAACAATGATATCGAGAGGGT
TTGGGCATTTTTTCGGACGGTGCTGGCGAGAATGTTTAAATGACCACATT
CCCATTGACTAGGCGTTCATAGTGAATCAGGTTGGAAGAATTGCATGAGG
CAAATTTTAAGGCAGTCCTCGGTTCAAGAGCCCCTTCTATGCTGCTTTAG
TATTTTTAAATGGCGCTGCTGCTGCTGATATTTTCATCATTTTTTCTGTG
AGTGTCCTAATAGTAGGAGCATTTGATGGACATTTAATAAACAATGATTT
TTTATTATATTAACTTTTTTTTTTTTTTTTTTTTTTTGGGGGGCGAAAAT
TCGCGCAGTTTTTTTCCGTAAAGTGGATGGGTGGGTGGGTCTGGGGCCTA
ACGGCATATGCCGTTAATAACTGCGCGAATTTAACTGTGCGCCATCCCTA
ATAAGGTTTGCTAGTTGATTTTTCTGGCAGTCTCTGACAAGACAGGGTTT
TACAGATTGATTTTTCTTGACATGGAGTCAAAGAAGAATGAAAAATCAAA
GGTTTGCTAGTATTTGGTTCAGCAACATCATCACCAAGTGGTATGGATCC
TTCAAGTTCTCAAAAAGCTATGACTTTTTTATAAATTGATAACTATAACT
TTACAACATACTATAAGTCTGTAGATTCTTGTTTTATTGTCCATATATTT
TCTTGTAGCAATGTATTCTTACTTTTATCAACTGCTGTTTATTGATATTG
TCATGTTGAAAATGGCGACCTTTTTGTCACAACAGAAAAAGGATACTGCA
CAAATCAGAGATTTCTTTGAAGGGCTGTTGGCAGGAGGAAAATGAGTGGA
AGGAAAAGGATGGCGGTGCTGTCGCAGTTTTGGCTTATTTCAACTACATA
CTAGCTACGATAAAAGATGAATATCATTATTGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig831:159658..163540+

>mRNA_H-akashiwo_Contig831.8.1 ID=mRNA_H-akashiwo_Contig831.8.1|Name=mRNA_H-akashiwo_Contig831.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=207bp|location=Sequence derived from alignment at H-akashiwo_Contig831:159658..163540+ (Heterosigma akashiwo CCMP452)
GCGCCGCGGCCAAGCCCCGCAGCACGGACCCCGCCGCGGCTAAGCCCAGG
GGCCACCAGAAAAAGGATACTGCACAAATCAGAGATTTCTTTGAAGGGCT
GTTGGCAGGAGGAAAATGAGTGGAAGGAAAAGGATGGCGGTGCTGTCGCA
GTTTTGGCTTATTTCAACTACATACTAGCTACGATAAAAGATGAATATCA
TTATTGT
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