mRNA_H-akashiwo_Contig831.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig831.4.1
Unique NamemRNA_H-akashiwo_Contig831.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig831.4.1 vs. uniprot
Match: A0A7S4D5N3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5N3_HETAK)

HSP 1 Score: 119 bits (297), Expect = 4.190e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 GFVVRLFLVWIGVDEWVSNRPELIPASHSFKDIQEGLFLKSRGLSPYAGDSFHH 162
            GFVVRLFLVWIGVDEWVSNRPELIPASHSFKDIQEGLFLKSRGLSPYAGDSFHH
Sbjct:    5 GFVVRLFLVWIGVDEWVSNRPELIPASHSFKDIQEGLFLKSRGLSPYAGDSFHH 58
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BLAST of mRNA_H-akashiwo_Contig831.4.1 vs. uniprot
Match: A0A7M7N7R2_STRPU (Uncharacterized protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7N7R2_STRPU)

HSP 1 Score: 49.7 bits (117), Expect = 1.660e-5
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 GFVVRLFLVWIGVDEWVSNRPELIPASHSFKDIQEGLFLKSRGLSPYAGDSFH 159
            G  VR  L    V  W+++R E+     S+K + EGL L  RG+SPYAGD+FH
Sbjct:   19 GVTVRSVLFNSFVSSWLTDRVEISTPLTSWKSMVEGLTLLERGISPYAGDTFH 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig831.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4D5N3_HETAK4.190e-32100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7M7N7R2_STRPU1.660e-545.28Uncharacterized protein n=2 Tax=Strongylocentrotus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig831contigH-akashiwo_Contig831:58667..59125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008609375.1
Preferred namePIGU
PFAMsPIG-U
Model size165
Max annot lvl2759|Eukaryota
KEGG koko:K05293
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016021,GO:0016255,GO:0019538,GO:0019637,GO:0023051,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042765,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046425,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0048583,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:0071944,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902531,GO:1903509,GO:1904892
Exons2
Evalue2.21e-07
EggNOG OGsKOG2552@1|root,KOG2552@2759|Eukaryota
Descriptionattachment of GPI anchor to protein
Cds size162
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388002.6729352-CDS-H-akashiwo_Contig831:58668..587051681388002.6729352-CDS-H-akashiwo_Contig831:58668..58705Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig831 58669..58705 -
1681388002.6865227-CDS-H-akashiwo_Contig831:59000..591251681388002.6865227-CDS-H-akashiwo_Contig831:59000..59125Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig831 59001..59125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig831.4.1prot_H-akashiwo_Contig831.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig831 58669..59125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig831.4.1

>prot_H-akashiwo_Contig831.4.1 ID=prot_H-akashiwo_Contig831.4.1|Name=mRNA_H-akashiwo_Contig831.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
GFVVRLFLVWIGVDEWVSNRPELIPASHSFKDIQEGLFLKSRGLSPYAGD
SFHH
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mRNA from alignment at H-akashiwo_Contig831:58667..59125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig831.4.1 ID=mRNA_H-akashiwo_Contig831.4.1|Name=mRNA_H-akashiwo_Contig831.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=459bp|location=Sequence derived from alignment at H-akashiwo_Contig831:58667..59125- (Heterosigma akashiwo CCMP452)
GGGTTTGTTGTTCGCCTCTTTCTAGTATGGATTGGCGTGGATGAGTGGGT
ATCAAATCGACCCGAGCTTATCCCTGCATCCCATTCGTTCAAGGATATCC
AGGAAGGCCTATTTTTGAAGTCTAGGTATGATGTATATATTTGTTTGCCT
TGTGACAGAGCCAATATTCTCTTTCCATTTGATTTCCAGTGGGTGGTTGC
ATTCTTCTTCCGCCGCACATGATGATGATGGTGATTTCAATTTATCTAAA
GTCCAGCGTTTTGGATAACTACATGATAATACACAAGCATTTGCTTGCAA
GTATGTAAACTATTTGATAGTATACCCTTAACGACCAATTCTTGCATGTC
TCGTGCCTTTGATGAAATGCAATGTGCCCTGATGCCCTTTTCTCCTGGGT
TTCTGGTGGCCCACCTCTAGGGGCCTTTCGCCATATGCTGGTGACAGCTT
TCACCACCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig831:58667..59125-

>mRNA_H-akashiwo_Contig831.4.1 ID=mRNA_H-akashiwo_Contig831.4.1|Name=mRNA_H-akashiwo_Contig831.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig831:58667..59125- (Heterosigma akashiwo CCMP452)
GGGTTTGTTGTTCGCCTCTTTCTAGTATGGATTGGCGTGGATGAGTGGGT
ATCAAATCGACCCGAGCTTATCCCTGCATCCCATTCGTTCAAGGATATCC
AGGAAGGCCTATTTTTGAAGTCTAGGGGCCTTTCGCCATATGCTGGTGAC
AGCTTTCACCAC
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