mRNA_H-akashiwo_Contig830.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig830.3.1
Unique NamemRNA_H-akashiwo_Contig830.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A7S3Y8S1_HETAK (Hypothetical protein (Fragment) n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8S1_HETAK)

HSP 1 Score: 293 bits (750), Expect = 1.330e-97
Identity = 146/181 (80.66%), Postives = 158/181 (87.29%), Query Frame = 1
Query:   31 FSLEHALCCKKGGLVKKGHDQLVDESCHLASLAYGA-GVKKEPFLRDASGKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSR 570
            FSLEHAL C KGG +K GHDQ+ DE  HL ++AYGA GVKKEPFLRDASG V DKDLRADF+A  VWERQRVAFFDNRILDADAPSRF+ N SYVTAMR AVQEKK +Y ERCE++AGS+TPLVCTVDGVFHRE+VAFMKRVAAALA KW K Y  VMCWVR+RLQFALIRAVDLRLRGSR
Sbjct:   48 FSLEHALNCMKGGNIKLGHDQVRDECVHLCTMAYGAAGVKKEPFLRDASGNVRDKDLRADFLAIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAALAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSR 228          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A7S3XPK9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPK9_HETAK)

HSP 1 Score: 226 bits (577), Expect = 1.000e-73
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 1
Query:   34 SLEHALCCKKGGLVKKGHDQLVDESCHLASLAYGAGVKKEPFLRDASG-KVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGS 384
            SLEHALCCKKGG +KKG+DQLVDESCHLASLAYGAGVKKEPFLRDASG KVLDKDLRADF+AHSVWERQRVAFFDNRILDADAPSRFN NMSYVTAMRTAVQEKKKKYQERCEDLAGS
Sbjct:    1 SLEHALCCKKGGNMKKGYDQLVDESCHLASLAYGAGVKKEPFLRDASGGKVLDKDLRADFMAHSVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGS 118          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A7S3XPJ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPJ1_HETAK)

HSP 1 Score: 211 bits (536), Expect = 3.240e-67
Identity = 106/133 (79.70%), Postives = 119/133 (89.47%), Query Frame = 1
Query:   82 GHDQLVDESC-HLASLAYG-AGVKKEPFLRDASGKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEK 474
            G DQ+V + C HL ++AYG AGVKKEPFLR+ASG V DKDLRADF+A  VWERQRVAFFDNRILDADAPSRFN NMSYVTAMRTAVQEKKKKY ERCE++AGS+TPLVCT+D VFH+E+VAFMKR+AAALA K
Sbjct:    5 GPDQVVRDECVHLCAMAYGVAGVKKEPFLREASGNVRDKDLRADFMAIGVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYLERCEEMAGSFTPLVCTLDRVFHQEFVAFMKRMAAALAGK 137          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A6V1VIF5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VIF5_HETAK)

HSP 1 Score: 186 bits (471), Expect = 9.780e-58
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 1
Query:  301 MSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRK 573
            MSYVTAMRTAVQEKKKKYQERCEDLAGS+TPLVCTVDGVFHRE+VAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRK
Sbjct:    1 MSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRK 91          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A0K8SWD2_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SWD2_LYGHE)

HSP 1 Score: 182 bits (461), Expect = 7.820e-54
Identity = 97/180 (53.89%), Postives = 118/180 (65.56%), Query Frame = 1
Query:   34 SLEHALCCKKGGLVKKGHDQLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRK 573
            ++ HAL CKKGGLVK GHDQ+ DE   LASLA+  GV  EP L+DAS       L AD  A  VWE  R A+FD RI++ADAPS       + T    A +EK  KY    EDL GS+TPL+ + DGV HRE+  F KR+AA L EKW KP+  V+ WVRV+LQ A+IRAV LR+RG+RK
Sbjct:   93 NVTHALNCKKGGLVKHGHDQVRDECARLASLAW-EGVATEPVLQDASANA--PMLVADIKAEGVWESGRAAYFDTRIINADAPS--YRGQEWSTISNNAAREKHNKYNRAAEDLRGSFTPLIISCDGVMHREFGVFSKRIAAVLNEKWSKPFSQVVSWVRVKLQMAVIRAVSLRIRGARK 267          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A0K8SU65_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SU65_LYGHE)

HSP 1 Score: 177 bits (449), Expect = 6.480e-53
Identity = 91/183 (49.73%), Postives = 122/183 (66.67%), Query Frame = 1
Query:   31 FSLEHALCCKKGGLVKKGHDQLVDESCHLASLAYGAGVKKEPFLRDAS-GKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKV 576
            F L HAL CK+GGLVK+GHD + DE   LA LA+G G   EP L+++S G  +   L AD     VWE  R AFFD RI++ADA S  +   ++ +  ++A + K +KY    E L GS+TPL+C+ DG  HREY  F KR+A+ LAEKW +PY +V+ WV+VR Q ++IRAV LRLRG+RK+
Sbjct:   23 FDLNHALNCKRGGLVKRGHDSVRDECAKLAGLAWG-GASVEPVLQESSEGSPM---LVADIKVQGVWESARPAFFDTRIVNADAASYLS--QTWESTAQSAARRKHEKYDRAAEHLRGSFTPLICSCDGALHREYTVFQKRLASTLAEKWSRPYSLVLGWVKVRTQVSIIRAVSLRLRGTRKI 199          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A0K8SIS0_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SIS0_LYGHE)

HSP 1 Score: 175 bits (444), Expect = 6.740e-51
Identity = 94/181 (51.93%), Postives = 120/181 (66.30%), Query Frame = 1
Query:   31 FSLEHALCCKKGGLVKKGHDQLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRK 573
            F + HAL CKKGGLVK GHDQL D+   LA LA+   V  EP LR++S    +  L AD   H VW+ +RVAFFD+RI++ADAPS      ++ +  R+A +EK  KY    ED  GS+TPLVC+ DGV H EY  F+KR+A  L+EKW+K    V  WVRV+ Q ++IRAV LRLRGSR+
Sbjct:  125 FDMTHALNCKKGGLVKHGHDQLRDDCARLAHLAWQQ-VSLEPVLRESSEN--ETALVADIGIHGVWDGERVAFFDHRIINADAPS--YRTQTWESLSRSAAREKHLKYNRAAEDRRGSFTPLVCSCDGVLHIEYETFLKRMANTLSEKWNKSLSWVTSWVRVKTQMSVIRAVSLRLRGSRR 300          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A6H5HCT1_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HCT1_9HEMI)

HSP 1 Score: 180 bits (457), Expect = 4.410e-49
Identity = 94/181 (51.93%), Postives = 121/181 (66.85%), Query Frame = 1
Query:   31 FSLEHALCCKKGGLVKKGHDQLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRK 573
            F + HAL CKKGGLVK+GHD + DE+  LA+ A+G GV  EP +R+A     +  L  D     VWE  R AFFDNRI++ADA S  +   S +   + A QEK  KY + CEDL GS+TPLVC+ DGV HRE+   +KR A  LAEKW +PY  V+ WVRVR++ A+I+AV LRLRG+R+
Sbjct:  847 FDVSHALNCKKGGLVKRGHDYVRDETAALAAQAWG-GVTFEPLIREAGAN--ETALVGDIRIEGVWESGRPAFFDNRIVNADAASYTSREWSQIA--QQAAQEKHHKYDQACEDLRGSFTPLVCSCDGVLHREFHTLLKRTADRLAEKWKRPYTQVLGWVRVRIEIAIIKAVSLRLRGARR 1022          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A0K8TIN7_LYGHE (Uncharacterized protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8TIN7_LYGHE)

HSP 1 Score: 165 bits (418), Expect = 1.480e-48
Identity = 89/175 (50.86%), Postives = 111/175 (63.43%), Query Frame = 1
Query:   49 LCCKKGGLVKKGHDQLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRK 573
            L CKKGGLVK+GH  + DE   +ASLA+  G+ KEP LR   G      L AD     VW+ +R AFFDNR+++ADA S    +  + T  + A   K  KY   CEDL GS+TPLV + DG  HREY  F+KR+A  L+EKW KPY  V  WVRV+ QF++IRAV LRLRG R+
Sbjct:    3 LTCKKGGLVKQGHGSIRDECGMMASLAW-TGICKEPVLRH--GIDGSPGLVADLKVQGVWDGERPAFFDNRVVNADAAS--YVSRDWPTISQQAANTKHAKYDRACEDLRGSFTPLVVSCDGALHREYETFLKRLANTLSEKWSKPYSQVALWVRVKTQFSVIRAVSLRLRGPRR 172          
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Match: A0A8D8Y6R6_9HEMI (Hypothetical protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8Y6R6_9HEMI)

HSP 1 Score: 166 bits (419), Expect = 1.800e-48
Identity = 85/179 (47.49%), Postives = 120/179 (67.04%), Query Frame = 1
Query:   34 SLEHALCCKKGGLVKKGHDQLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSR 570
            +L HAL CKK GLVK GHD + D+   LAS+A+  GVKKEP +R+    +    L AD   +  WE  R AFFDNR+++ADAPS  +   S+ T   T  +EK  KY    ED+ GS++PLVC+ DG  H E+  F+KR+A  L+E+W KP+G ++ +V++++QF++IRAV LRLRG+R
Sbjct:   22 NLTHALDCKKEGLVKHGHDNIRDDCVMLASMAWN-GVKKEPVVREGGPNLTS--LIADIQINGFWEAGRAAFFDNRVVNADAPSYLS--QSWSTLSNTHAREKHLKYDRAIEDIRGSFSPLVCSCDGALHVEFEQFVKRMALRLSERWSKPFGRIVEFVKLKVQFSIIRAVSLRLRGTR 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig830.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8S1_HETAK1.330e-9780.66Hypothetical protein (Fragment) n=4 Tax=Heterosigm... [more]
A0A7S3XPK9_HETAK1.000e-7394.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XPJ1_HETAK3.240e-6779.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1VIF5_HETAK9.780e-5897.80Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A0K8SWD2_LYGHE7.820e-5453.89Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A0K8SU65_LYGHE6.480e-5349.73Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A0K8SIS0_LYGHE6.740e-5151.93Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A6H5HCT1_9HEMI4.410e-4951.93Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A0K8TIN7_LYGHE1.480e-4850.86Uncharacterized protein n=1 Tax=Lygus hesperus Tax... [more]
A0A8D8Y6R6_9HEMI1.800e-4847.49Hypothetical protein n=1 Tax=Cacopsylla melanoneur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig830contigH-akashiwo_Contig830:218954..219529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15705610
PFAMsRVT_1
Model size576
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.34e-40
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size576
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388002.4324558-CDS-H-akashiwo_Contig830:218953..2195291681388002.4324558-CDS-H-akashiwo_Contig830:218953..219529Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig830 218954..219529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig830.3.1prot_H-akashiwo_Contig830.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig830 218954..219529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig830.3.1

>prot_H-akashiwo_Contig830.3.1 ID=prot_H-akashiwo_Contig830.3.1|Name=mRNA_H-akashiwo_Contig830.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=192bp
MTARNVYLISFSLEHALCCKKGGLVKKGHDQLVDESCHLASLAYGAGVKK
EPFLRDASGKVLDKDLRADFVAHSVWERQRVAFFDNRILDADAPSRFNCN
MSYVTAMRTAVQEKKKKYQERCEDLAGSYTPLVCTVDGVFHREYVAFMKR
VAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKV
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mRNA from alignment at H-akashiwo_Contig830:218954..219529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig830.3.1 ID=mRNA_H-akashiwo_Contig830.3.1|Name=mRNA_H-akashiwo_Contig830.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=576bp|location=Sequence derived from alignment at H-akashiwo_Contig830:218954..219529- (Heterosigma akashiwo CCMP452)
ATGACCGCACGCAATGTATATCTTATATCTTTTAGCTTGGAGCATGCCCT GTGCTGCAAGAAGGGGGGCCTTGTGAAGAAAGGGCATGACCAGCTGGTGG ATGAGAGTTGCCACCTGGCGAGCTTGGCTTATGGGGCTGGGGTGAAGAAG GAGCCTTTCCTGAGGGATGCCAGTGGGAAGGTGCTGGACAAGGACCTTCG GGCGGACTTCGTGGCTCATAGTGTGTGGGAGAGGCAGAGGGTGGCGTTTT TTGACAACCGCATTTTAGATGCTGACGCACCTTCTCGTTTCAACTGCAAC ATGAGCTATGTGACTGCCATGCGCACCGCAGTACAGGAGAAGAAGAAGAA ATACCAGGAGCGCTGCGAGGACCTGGCTGGGAGCTATACACCTTTAGTGT GCACGGTGGATGGGGTCTTTCACAGGGAGTATGTCGCTTTCATGAAGAGG GTGGCGGCTGCGCTTGCGGAGAAATGGCATAAGCCCTATGGGGTGGTGAT GTGTTGGGTAAGGGTGCGGCTGCAGTTTGCACTGATCCGGGCTGTGGACC TGAGACTGCGTGGGTCGAGGAAGGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig830:218954..219529-

>mRNA_H-akashiwo_Contig830.3.1 ID=mRNA_H-akashiwo_Contig830.3.1|Name=mRNA_H-akashiwo_Contig830.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=576bp|location=Sequence derived from alignment at H-akashiwo_Contig830:218954..219529- (Heterosigma akashiwo CCMP452)
ATGACCGCACGCAATGTATATCTTATATCTTTTAGCTTGGAGCATGCCCT
GTGCTGCAAGAAGGGGGGCCTTGTGAAGAAAGGGCATGACCAGCTGGTGG
ATGAGAGTTGCCACCTGGCGAGCTTGGCTTATGGGGCTGGGGTGAAGAAG
GAGCCTTTCCTGAGGGATGCCAGTGGGAAGGTGCTGGACAAGGACCTTCG
GGCGGACTTCGTGGCTCATAGTGTGTGGGAGAGGCAGAGGGTGGCGTTTT
TTGACAACCGCATTTTAGATGCTGACGCACCTTCTCGTTTCAACTGCAAC
ATGAGCTATGTGACTGCCATGCGCACCGCAGTACAGGAGAAGAAGAAGAA
ATACCAGGAGCGCTGCGAGGACCTGGCTGGGAGCTATACACCTTTAGTGT
GCACGGTGGATGGGGTCTTTCACAGGGAGTATGTCGCTTTCATGAAGAGG
GTGGCGGCTGCGCTTGCGGAGAAATGGCATAAGCCCTATGGGGTGGTGAT
GTGTTGGGTAAGGGTGCGGCTGCAGTTTGCACTGATCCGGGCTGTGGACC
TGAGACTGCGTGGGTCGAGGAAGGTG
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