mRNA_H-akashiwo_Contig827.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig827.13.1
Unique NamemRNA_H-akashiwo_Contig827.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A6V2T5N7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T5N7_HETAK)

HSP 1 Score: 575 bits (1481), Expect = 1.860e-202
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = -1
Query:  444 LLVTMGWTCVVTAALHVFPAVPALSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQGGEKPHRTEYFLEAEDYLELGRASNRPLCLVNKIAKVVKGVEYSAAWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADVIQTMGSRDVLPTYLSTPFFANFPAPPAAEAPATSG 1307
            LLVTMGWTCVVTAALHVFPAVPALSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQGGEKPHRTEYFLEAEDYLELGRASNRPLCLVNKIAKVVKGVEYSAAWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADVIQTMGSRDVLPTYLSTPFFANFPAPPAAEAPATSG
Sbjct:  142 LLVTMGWTCVVTAALHVFPAVPALSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQGGEKPHRTEYFLEAEDYLELGRASNRPLCLVNKIAKVVKGVEYSAAWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADVIQTMGSRDVLPTYLSTPFFANFPAPPAAEAPATSG 429          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A7S2V428_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V428_9STRA)

HSP 1 Score: 254 bits (648), Expect = 2.140e-78
Identity = 133/279 (47.67%), Postives = 181/279 (64.87%), Query Frame = -1
Query:  534 VTAALHVFPAVPALSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQG----------------------------GEKPHRTEYFLEAEDYLELGRASNRPLCLVNKIAKVVKGVEYSA-AWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPF--RRALKLEVIADTIYADVIQTMG 1277
            V+ A H+F  +P+LSP+ H  +  AL LLLVFRTNAAYNRFWEG ++W+K+ +  R LAR+L +Y EELG  R +R+A+L+ AFP VLQEHLQG                                 R    L   D  E+  ASNRPL ++ K+A   K    +A  WTSRERL L+ +++ LS+ +GACERL+Q PVPLAY RHT+RFL++WV+SLPL +A DMG   VPA+G+++W L+GIQE+GL IEDPF  R+ L+LE  ++ I+ D++ T+G
Sbjct:    2 VSLATHLFN-LPSLSPRPHAMLGGALGLLLVFRTNAAYNRFWEGAKVWEKLHNTCRDLARFLAIYEEELGRKRVERIASLLSAFPYVLQEHLQGTPIEPNTPAKMKLKHKWDRDNWAFWKSANRMAKRLGTLLPPGDVSEMKHASNRPLWVLGKLAVECKATPLNALTWTSRERLTLVKMLDRLSEGLGACERLIQIPVPLAYARHTSRFLTIWVMSLPLMMAKDMGIATVPALGVISWGLYGIQELGLIIEDPFKNRQVLRLEHFSNRIFQDILDTLG 279          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: D7FUB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUB7_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 3.220e-76
Identity = 131/263 (49.81%), Postives = 175/263 (66.54%), Query Frame = -1
Query:  525 LLVTMGWTCVVTAALHVFPAVPALSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQGGEKPHRTEYFLEAEDYLELGRAS-NRPLCLVNKIAKVVKGVEYSAA-WTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADVIQTMGSRD 1307
            LLV   W   V+        V ++S K HT + SAL LLLVFRTNAAY RF EGR++W++VL+ +R +AR  TLY +  G    +R+ANL+    ++LQEHLQG + P   E  L  E+  +L   + NRPL +VN I++ +K V Y    W+SRERLA+L++ N L  TIG CERLVQTPVPL Y RHT+RFL++W   LPL + G+MG    P + L  WALFGIQEIGL IEDPF+ AL L+++ +++Y DV+QT+G  D
Sbjct:  157 LLVQTFWATAVSLVHAGLGGVHSMSIKPHTLLGSALGLLLVFRTNAAYQRFQEGRKLWEEVLNVSRDIARMSTLYEDVFGRRLVQRIANLLACHAVILQEHLQGYKLPRVWEDLLRPEEVRDLMTTNCNRPLKVVNMISREIKSVPYRCEDWSSRERLAILSMCNKLGSTIGGCERLVQTPVPLHYVRHTSRFLTIWCFLLPLVIVGEMGMATAPVVFLATWALFGIQEIGLLIEDPFQSALSLDIMCNSVYTDVMQTVGVAD 419          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A7S4DXN2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXN2_9EUKA)

HSP 1 Score: 247 bits (631), Expect = 1.260e-72
Identity = 126/256 (49.22%), Postives = 175/256 (68.36%), Query Frame = -1
Query:  537 WTCVVTAALH--VFPAVPALSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQG---GEKPHRTEYFLEAEDYLELGRASNRPLCLVNKIAKVVKGVEYSAAWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADVIQTM 1289
            WT  + A LH   FP     S    T V+ AL LLLVFRTNAAYNRFWEGRQIW++++D +RSLAR  +LY +  G+ +  RVA L+ A+ IVL++HL      E     +  L  +D + LGRA+NRPL ++  + + +  +  S  + SRERLA+L  V+ L++ +GA ER+VQTPVPL Y RHT+RFL+ W L+LP+ + G++G+ ++P M LV WAL+GIQEIGL IE+PFRR+L L V  +TIY DV++T+
Sbjct:  197 WTTAI-AMLHYYAFPLPHVASGHGPTLVTPALGLLLVFRTNAAYNRFWEGRQIWEQLIDHSRSLARMASLYVKSAGEEQVTRVAKLLSAYSIVLKQHLTEFRLNESRFVEQVLLSPQDRIALGRATNRPLAVLLMLGQAIHEIPDSPTFASRERLAMLRTVDKLTECMGAAERIVQTPVPLNYARHTSRFLTFWCLTLPIAIVGELGFASIPVMALVTWALYGIQEIGLMIEEPFRRSLSLHVFCNTIYTDVMETV 451          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A7S0XTE6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XTE6_HEMAN)

HSP 1 Score: 237 bits (604), Expect = 2.020e-68
Identity = 120/245 (48.98%), Postives = 166/245 (67.76%), Query Frame = -1
Query:  531 LSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQG--GEKPHRTEYFLEAEDYLELGR-ASNRPLCLVNKIAKVVKGVEYSAAWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRA------LKLEVIADTIYADVIQTMGS 1238
            +S   HT V SA+SLLLVFRTNAAY RFWEGR IW+ +++ +R LAR +  Y++E+  A  +R+A+L+CAFP+ LQ+H  G  G +       L  E  LE+ R A+NRP+C+ N++A V   + YS  WTSRERLA++ LVN +S  +G+CERLVQTP+PL Y RHT+RFL+++ L+LPL L  ++G+ AVPA+  V W LFG+QEIGL IE+PF         L L +   T+  DV + + S
Sbjct:  297 ISKTPHTIVGSAMSLLLVFRTNAAYTRFWEGRGIWEHLMNKSRDLARMVATYSDEISPATSRRMADLICAFPVALQQHALGFLGPEQEHDLMRLVGEPDLEIIRTAANRPVCIANRMALVAHEIPYSDQWTSRERLAMMGLVNEISKCVGSCERLVQTPIPLHYARHTSRFLAVFTLTLPLFLVQEVGFMAVPAVACVVWCLFGVQEIGLMIENPFATTKEGNWGLPLNIFCKTVRHDVWEVLDS 541          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A7S0W3I9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W3I9_9CRYP)

HSP 1 Score: 237 bits (605), Expect = 2.830e-68
Identity = 120/245 (48.98%), Postives = 167/245 (68.16%), Query Frame = -1
Query:  531 LSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQGGEKPHRTEYFLE--AEDYLELGR-ASNRPLCLVNKIAKVVKGVEYSAAWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRA------LKLEVIADTIYADVIQTMGS 1238
            +S   HT V SA+SLLLVFRTNAAY RFWEGR IW+ +++ +R LAR +  Y+ E+  A  +R+A+L+CAFP+ LQ+H  G   P + +  +    E  LE+ R A+NRP+C+ N++A V   + YS  WTSRERLA++ALVN +S  +G+CERLVQTP+PL Y RHT+RFL+++ L+LPL L  ++G+ AVPA+  V W LFG+QEIGL IE+PF         L L +   T+  DV + + S
Sbjct:  280 ISKTPHTIVGSAMSLLLVFRTNAAYTRFWEGRGIWEHLMNKSRDLARMVAAYSLEISPATSRRMADLICAFPVALQQHALGFLGPEQEDDLMRLVGEPDLEIIRTAANRPVCIANRMALVAHEIPYSEQWTSRERLAMMALVNEISKCVGSCERLVQTPIPLHYARHTSRFLAVFTLTLPLFLVQEVGFMAVPAVACVVWCLFGVQEIGLMIENPFATTKEGNWGLPLNIFCKTVRHDVWEVLDS 524          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A7S2G241_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G241_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.180e-65
Identity = 120/260 (46.15%), Postives = 165/260 (63.46%), Query Frame = -1
Query:  522 KAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEEL------------GDARRK-------RVANLVCAFPIVLQEHLQGGEKPHRTEYFLEAEDYLELGRASNRPLCLVNKIAKVVKGV--EYSA---AWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADVIQTMGSRDV 1229
            +AH  V SAL LLLVFRTNAAYNRFWEG QIW+++L   R L R   LY +EL            G+ RRK       R+ANL+C +P +L EH+      ++    L  ED  EL R  N+PL ++  + + +K +  ++S     ++SRERL  L LV  + ++I  CERLVQTPVPL Y RHT+R L++W L+LPL LA ++G   VP +  ++WALFGIQEIGL IE+PFRR+L+LEV+  TI  DV++ M + ++
Sbjct:    1 RAHALVGSALGLLLVFRTNAAYNRFWEGCQIWERLLARTRDLMRMSILYRKELATDFVKVGDVTVGEKRRKLRMPKLERIANLLCVYPYILFEHVTTKTCKNQVTNLLTREDKQELKRMGNKPLFILFLLGREIKAIPDQHSGDQIMFSSRERLTFLKLVEQMGNSISQCERLVQTPVPLNYVRHTSRLLTIWCLTLPLALASELGMITVPVLFCISWALFGIQEIGLMIEEPFRRSLRLEVMTKTISDDVMEIMTTANL 260          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A4D9CMW5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMW5_9STRA)

HSP 1 Score: 223 bits (568), Expect = 3.590e-65
Identity = 121/261 (46.36%), Postives = 167/261 (63.98%), Query Frame = -1
Query:  534 LVTMGWTCVVTAALHVFPAVPALSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQGGEKPHRTEYFLEAEDYLELGRASNRPLCLVNKIAKVVKGVEYSAAWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMG-WGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLE---VIADTIYADVIQTMG 1304
            ++ M W  +V+A    F  + A+  + HT + S+L LLLVFRTN +Y R+WEGR +W+K+   +R LAR ++LY + LG  +    A L+CA+P+ L+EHL G  +       L      EL  +SN+PL L N++  + +GV  S +++SRERL+LL LVN LS  +GACERLVQTPVPL+Y RHT+RFL+L++ SLP+ L  D      V   GL  WALFGI EIGL IEDPF+R LK     VIAD++  D+  T+ 
Sbjct:  103 MLNMLWAGLVSAVGSYFN-LQAIPSRVHTLLGSSLGLLLVFRTNTSYGRYWEGRVLWEKLHGKSRDLARMMSLYEDCLGSEKVTAAARLICAYPLALREHLSGDSRKLELTRLLGPHVSEELDLSSNKPLWLCNRLGLLFRGVPESPSFSSRERLSLLGLVNDLSGLLGACERLVQTPVPLSYARHTSRFLTLYLWSLPMVLVADFSPVSLVFVTGLCTWALFGILEIGLLIEDPFQRVLKTSWTGVIADSVMRDMQATLA 362          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A7S1UCQ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCQ9_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.640e-63
Identity = 118/237 (49.79%), Postives = 151/237 (63.71%), Query Frame = -1
Query:  549 KAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQGGEKPHRTEYFLEAEDYLELGRASNRPLCLVNKIAKVVKGVEYSA----------AWTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADV 1229
            K H  +S AL LLLVFRTNAAY RFWEGR+IWQ + D  R L R   ++A  +   R + +  ++CAFP VL+EHL G   P      LE ++   L  A NRP+ ++NK++  +  V              A++SRERL+LL ++ SL   +GA ERLVQTPVPL Y RHT+RFLS+W L+LP  L G++G   VP M LV WALFGIQEIGL IE+PF  +LKL VI D+I  DV
Sbjct:   44 KPHHLLSGALGLLLVFRTNAAYQRFWEGRKIWQGIQDDVRDLTRIAAVHAPFIEVDRLRLLGRMLCAFPWVLREHLTG--LPASKYLSLEKKEKRALAEARNRPMYIINKLSAALAMVPDQDVGSAEELPGHAFSSRERLSLLNMLKSLGQRVGAAERLVQTPVPLMYARHTSRFLSMWCLTLPFVLVGELGLWTVPLMTLVTWALFGIQEIGLMIENPFGVSLKLSVICDSISLDV 278          
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Match: A0A8J6C5F6_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5F6_DIALT)

HSP 1 Score: 218 bits (556), Expect = 6.450e-63
Identity = 118/268 (44.03%), Postives = 168/268 (62.69%), Query Frame = -1
Query:  534 LVTMGWTCVVTAALHVFPAVPALSPKAHTFVSSALSLLLVFRTNAAYNRFWEGRQIWQKVLDCARSLARYLTLYAEELGDARRKRVANLVCAFPIVLQEHLQGGEKPHRTEYFLEAEDY---------LELGRASNRPLCLVNKIAKVVKGVEYSAA--WTSRERLALLALVNSLSDTIGACERLVQTPVPLAYTRHTNRFLSLWVLSLPLTLAGDMGWGAVPAMGLVAWALFGIQEIGLTIEDPFRRALKLEVIADTIYADVIQTMG 1304
            L ++ W+ ++ AALH          + HT +S AL+LLLVFRTN++YNRFWEGR+IW+K+L+  R L R  T+Y + +   R +R+A L+   P VL+ H+Q   +P   E  L   D          + L R  N+PL + N +A+ ++ +  S A  ++SRERL LLA+VN LS  IGACER+VQTPVP  Y RHT+RFL LW+ +LPL L  +MG+  VPA+  ++W LFGIQE+GL IE+PF   LKL+++       V +T+ 
Sbjct:  150 LASVVWSALL-AALHAVTHFHVPCSRPHTLLSWALALLLVFRTNSSYNRFWEGRKIWEKLLNRCRDLVRTCTVYRDAISLRRLRRIACLITILPRVLRSHVQ--VRPFADEQSLSTRDISACLLPYDKMVLARVRNKPLFIANTLAREIRAIPTSDALDFSSRERLFLLAMVNDLSACIGACERIVQTPVPTQYARHTSRFLCLWIFTLPLLLLPEMGFWVVPAIACISWVLFGIQELGLQIENPFESILKLDILEGMNQQSVDETLS 414          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig827.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V2T5N7_HETAK1.860e-202100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V428_9STRA2.140e-7847.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FUB7_ECTSI3.220e-7649.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4DXN2_9EUKA1.260e-7249.22Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S0XTE6_HEMAN2.020e-6848.98Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0W3I9_9CRYP2.830e-6848.98Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2G241_9STRA1.180e-6546.15Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4D9CMW5_9STRA3.590e-6546.36Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1UCQ9_9STRA2.640e-6349.79Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J6C5F6_DIALT6.450e-6344.03Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig827contigH-akashiwo_Contig827:347184..348490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1309
Hectar predicted targeting categoryother localisation
Exons1
Cds size990
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388000.2951722-UTR-H-akashiwo_Contig827:347183..3475001681388000.2951722-UTR-H-akashiwo_Contig827:347183..347500Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig827 347184..347500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388000.3037372-CDS-H-akashiwo_Contig827:347500..3484901681388000.3037372-CDS-H-akashiwo_Contig827:347500..348490Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig827 347501..348490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig827.13.1prot_H-akashiwo_Contig827.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig827 347501..348490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig827.13.1

>prot_H-akashiwo_Contig827.13.1 ID=prot_H-akashiwo_Contig827.13.1|Name=mRNA_H-akashiwo_Contig827.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=330bp
MGAAGGPSAAGRSLSLDLASVPPPLPSFPVFFVRTATVGRSSAAGGGRLG
RGRRGEVRKERRGEVGGQHVPGAHGLDHVRVDRVRDHLELERAPEGVLDG
QSDLLDAEERPGHQAHRGHGAPAHVPRQGERQREHPQAQEAVRVPRVGQG
HRRLHQPLAGADRVRQAVDQGQQRQPLARGPGGRVLHALDHLGDLVHQAQ
RPVAGAAQLEVVLRLQEVLGAVRLLAALQVLLQHDGEGADQVGHALAPRV
AQLLGVQREVARQRARAVQHLLPDLPALPEPVVGRVRAEHQQQAQRAGYE
GVRLGAERGHRREDVQRRRHDAGPPHGHQQ
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mRNA from alignment at H-akashiwo_Contig827:347184..348490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig827.13.1 ID=mRNA_H-akashiwo_Contig827.13.1|Name=mRNA_H-akashiwo_Contig827.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1307bp|location=Sequence derived from alignment at H-akashiwo_Contig827:347184..348490+ (Heterosigma akashiwo CCMP452)
CACAGATATATATTAGTTCAGGGCAAAAAAGAGGAAGAAGAAGAGTGCAA GTGAAAGAAGAAGAAGAAGAAGGAAGACAAGGAGAGCGGTGCGGACGCGG CCGTGGCGGAGATCGCCGAGGTGGTGGACTTCATCCGGCACCCCGCACAC ACGGTACCGGCGGCTGGGCGCCCGGCTGCCCAAGGTTGGTCATACTAAAC AGTCAGCAGTATTGCAGTACTAGTCTATAGTGCTTATCAACCCAGAAGAC CATCTACTACTGGGCTGTAATTTACTACTACTACTACTTCATCCGGTCTG CACCCCCCCGCCAAGGGATGGGGGCGGCGGGCGGCCCTTCTGCTGCGGGA AGAAGCCTCTCCCTTGACCTTGCGAGCGTTCCTCCCCCTCTACCATCTTT CCCAGTCTTTTTCGTACGCACGGCCACGGTCGGCCGGTCGTCAGCCGCTG GTGGCGGGCGCCTCGGCCGCGGGCGGCGCGGGGAAGTTCGCAAAGAACGG CGTGGAGAGGTAGGTGGGCAGCACGTCCCGGGAGCCCATGGTCTGGATCA CGTCCGCGTAGATCGTGTCCGCGATCACCTCGAGCTTGAGCGCGCGCCGG AAGGGGTCCTCGATGGTCAGTCCGATCTCCTGGATGCCGAAGAGCGCCCA GGCCACCAGGCCCATCGCGGGCACGGCGCCCCAGCCCATGTCCCCCGCCA GGGTGAGCGGCAGCGAGAGCACCCACAGGCTCAGGAAGCGGTTCGTGTGC CGCGTGTAGGCCAGGGGCACCGGCGTCTGCACCAGCCGCTCGCAGGCGCC GATCGTGTCCGACAGGCTGTTGACCAGGGCCAGCAGCGCCAGCCGCTCGC GCGAGGTCCAGGCGGCCGAGTACTCCACGCCCTTGACCACCTTGGCGATC TTGTTCACCAGGCACAGCGGCCGGTTGCTGGCGCGGCCCAGCTCGAGGTA GTCCTCCGCCTCCAGGAAGTACTCGGTGCGGTGCGGCTTCTCGCCGCCCT GCAGGTGCTCCTGCAGCACGATGGGGAAGGCGCAGACCAGGTTGGCCACG CGCTTGCGCCGCGCGTCGCCCAGCTCCTCGGCGTACAGCGTGAGGTAGCG CGCCAGCGAGCGCGCGCAGTCCAGCACCTTCTGCCAGATCTGCCGGCCCT CCCAGAACCGGTTGTAGGCCGCGTTCGTGCGGAACACCAGCAGCAGGCTC AGCGCGCTGGATACGAAGGTGTGCGCCTTGGGGCTGAGCGCGGGCACCGC CGGGAAGACGTGCAGCGCCGCCGTCACGACGCAGGTCCACCCCATGGTCA CCAGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig827:347184..348490+

>mRNA_H-akashiwo_Contig827.13.1 ID=mRNA_H-akashiwo_Contig827.13.1|Name=mRNA_H-akashiwo_Contig827.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=990bp|location=Sequence derived from alignment at H-akashiwo_Contig827:347184..348490+ (Heterosigma akashiwo CCMP452)
ATGGGGGCGGCGGGCGGCCCTTCTGCTGCGGGAAGAAGCCTCTCCCTTGA
CCTTGCGAGCGTTCCTCCCCCTCTACCATCTTTCCCAGTCTTTTTCGTAC
GCACGGCCACGGTCGGCCGGTCGTCAGCCGCTGGTGGCGGGCGCCTCGGC
CGCGGGCGGCGCGGGGAAGTTCGCAAAGAACGGCGTGGAGAGGTAGGTGG
GCAGCACGTCCCGGGAGCCCATGGTCTGGATCACGTCCGCGTAGATCGTG
TCCGCGATCACCTCGAGCTTGAGCGCGCGCCGGAAGGGGTCCTCGATGGT
CAGTCCGATCTCCTGGATGCCGAAGAGCGCCCAGGCCACCAGGCCCATCG
CGGGCACGGCGCCCCAGCCCATGTCCCCCGCCAGGGTGAGCGGCAGCGAG
AGCACCCACAGGCTCAGGAAGCGGTTCGTGTGCCGCGTGTAGGCCAGGGG
CACCGGCGTCTGCACCAGCCGCTCGCAGGCGCCGATCGTGTCCGACAGGC
TGTTGACCAGGGCCAGCAGCGCCAGCCGCTCGCGCGAGGTCCAGGCGGCC
GAGTACTCCACGCCCTTGACCACCTTGGCGATCTTGTTCACCAGGCACAG
CGGCCGGTTGCTGGCGCGGCCCAGCTCGAGGTAGTCCTCCGCCTCCAGGA
AGTACTCGGTGCGGTGCGGCTTCTCGCCGCCCTGCAGGTGCTCCTGCAGC
ACGATGGGGAAGGCGCAGACCAGGTTGGCCACGCGCTTGCGCCGCGCGTC
GCCCAGCTCCTCGGCGTACAGCGTGAGGTAGCGCGCCAGCGAGCGCGCGC
AGTCCAGCACCTTCTGCCAGATCTGCCGGCCCTCCCAGAACCGGTTGTAG
GCCGCGTTCGTGCGGAACACCAGCAGCAGGCTCAGCGCGCTGGATACGAA
GGTGTGCGCCTTGGGGCTGAGCGCGGGCACCGCCGGGAAGACGTGCAGCG
CCGCCGTCACGACGCAGGTCCACCCCATGGTCACCAGCAG
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