mRNA_H-akashiwo_Contig821.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig821.1.1
Unique NamemRNA_H-akashiwo_Contig821.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig821.1.1 vs. uniprot
Match: A0A7S3URD7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URD7_HETAK)

HSP 1 Score: 201 bits (511), Expect = 1.530e-64
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:    1 RASSAEEPVAGAAEFVEGMNRHEERHFALFNCINDLKAEEEHLLMERHSLENQMKAKCFARWRLKKEQDKKFRQLTSQLNGFKKGMKYHTASYEQEAAQLREVAE 315
            RASSAEEPVAGAAEFVEGMNRHEERHFALFNCINDLKAEEEHLLMERHSLENQMKAKCFARWRLKKEQDKKFRQLTSQLNGFKKGMKYHTASYEQEAAQLR VAE
Sbjct:   57 RASSAEEPVAGAAEFVEGMNRHEERHFALFNCINDLKAEEEHLLMERHSLENQMKAKCFARWRLKKEQDKKFRQLTSQLNGFKKGMKYHTASYEQEAAQLRAVAE 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3URD7_HETAK1.530e-6499.05Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig821contigH-akashiwo_Contig821:3116..4841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size319
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387998.5115175-CDS-H-akashiwo_Contig821:3115..32261681387998.5115175-CDS-H-akashiwo_Contig821:3115..3226Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig821 3116..3226 +
1681387998.5215073-CDS-H-akashiwo_Contig821:4633..48401681387998.5215073-CDS-H-akashiwo_Contig821:4633..4840Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig821 4634..4840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig821.1.1prot_H-akashiwo_Contig821.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig821 3116..4840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig821.1.1

>prot_H-akashiwo_Contig821.1.1 ID=prot_H-akashiwo_Contig821.1.1|Name=mRNA_H-akashiwo_Contig821.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=106bp
RASSAEEPVAGAAEFVEGMNRHEERHFALFNCINDLKAEEEHLLMERHSL
ENQMKAKCFARWRLKKEQDKKFRQLTSQLNGFKKGMKYHTASYEQEAAQL
REVAEP
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mRNA from alignment at H-akashiwo_Contig821:3116..4841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig821.1.1 ID=mRNA_H-akashiwo_Contig821.1.1|Name=mRNA_H-akashiwo_Contig821.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1726bp|location=Sequence derived from alignment at H-akashiwo_Contig821:3116..4841+ (Heterosigma akashiwo CCMP452)
CGGGCCTCGAGCGCGGAGGAGCCGGTGGCGGGGGCGGCGGAGTTCGTGGA
GGGGATGAACCGGCACGAGGAGCGGCACTTCGCGCTGTTCAACTGCATCA
ACGACCTGAAGGTCAGCGGGTCCCGCgGGAGAACGGGGGATTTGCTTTCG
TGTTGGTCGTGTCTGCACCTCCCACCCAGCACACAAAAGGGCCGGCTTCC
TTTCTACATGGTCCGATGCTGCTGTCTCATCATGCCTGATAAGGGCTTGA
TCACCTTTTTTGTTTTGTTTTGCAAGCAGTTCTGGCTGGTTTCATGGAGT
GGCGAGAACAGTCAGCTGTGAGAGGGGAAAAAAACACTAAAGGGGTGGGA
TTTGCTTGGAAATTTCCAAAATCCGGTTTTTCGCGAAAAAAAAAGGCAAC
TATTTGACCCCGTCGAACACAAACATAAACGCAAAACGCAGCGTATCTAC
CACGCCCGAGGTTAAGCGTATTTGAAAAATACAAAAGAATACTGAATTTC
TCGAATAAATTCCCGAAAATCCGCATTTCCCCTGTGAAAAGCTTTTATTT
GGGGTAATTCGGGATGCAAGAAGGTATGTCGAATTTCGGGATAATTGTTC
TTCTTCATCTTCTTATTTATTGTCCTTCTCCTCCTCGCTCCTTCTCGTTC
TCCTCGTGCTGCTGCTGCTGCTATACGCTCCTTTCGCGAGAACGACCTTC
CATTCGACAAATTGGTTCGGCCGAAGCCGAAGGTAGTCAAGTGCGCTGGC
TGTACTAAGTCCAAAGTAAAATGACAGCACATAGCCCCCCCAAAAGAATG
ATTTCAGCTAGAAAATGGTGTTAGATAAGCAAGAGCAGCCTGTTTTGGTG
GAGAAGAAACGAAACATTCAGCAACCTTCGATATTTGTATCGGAGGAAAT
CAAGCGGGGGGGACATGCTATAGTGTGTCCCAAAAATGCAAAGCGGCGTC
AGATATAAGCGATACACTATTAACTAGAAGTAGGTCAAAGTGATGCTTGA
ACAGGGAGTTTAGCAGATGGTGGGGAATCTCAAATTGAAACTGCAAGCCA
AGCAGAAGGAGCTTTCGCTCTACACAGAGGGAAAATAAGTATTTGGGTTG
GTGAAACTGTGATGGACATCTCAGAGCAAAGAATGATGAGCCGGATTCTG
GGCTGGCTTCAACCAACAATAATCTGTTAAGAGCATTCATCACTGGAAAT
GCTTTGATAACTTGTGAATAATAAATGGTGCAAGGACACATACTTACATC
TCTTGCATCTCATACACTATTCCCCATTGAATGTGCAAATTTAAAAAATA
CGAAAATCTTCCAAAAATGGCCCGTTTTTGACCCCCTTTAGCGTTTTTTT
CCCCGAGAGCGTACTGCACTGCACTTCTTTGCCATCGGCACGCAGCTGTG
CTCTTTTTTGAATCAACACGCTGCGCCGCCCTTGCCCTGTTTTCTCCCTT
TCTCTCTCTCTGTGTGCTCTTGCTGGTGCCCTAACTGCATCTTCTTGCTC
TTCTTCCCCCCACCACAGGCAGAGGAAGAACACTTGCTGATGGAGCGTCA
TTCCCTAGAGAACCAGATGAAGGCCAAATGCTTCGCGCGCTGGCGCCTGA
AGAAGGAGCAGGACAAGAAGTTCCGCCAGCTCACCTCGCAGCTGAACGGC
TTCAAGAAGGGCATGAAATACCACACCGCCAGCTACGAGCAGGAGGCAGC
CCAGCTGCGCGAGGTGGCGGAGCCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig821:3116..4841+

>mRNA_H-akashiwo_Contig821.1.1 ID=mRNA_H-akashiwo_Contig821.1.1|Name=mRNA_H-akashiwo_Contig821.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=318bp|location=Sequence derived from alignment at H-akashiwo_Contig821:3116..4841+ (Heterosigma akashiwo CCMP452)
CGGGCCTCGAGCGCGGAGGAGCCGGTGGCGGGGGCGGCGGAGTTCGTGGA
GGGGATGAACCGGCACGAGGAGCGGCACTTCGCGCTGTTCAACTGCATCA
ACGACCTGAAGGCAGAGGAAGAACACTTGCTGATGGAGCGTCATTCCCTA
GAGAACCAGATGAAGGCCAAATGCTTCGCGCGCTGGCGCCTGAAGAAGGA
GCAGGACAAGAAGTTCCGCCAGCTCACCTCGCAGCTGAACGGCTTCAAGA
AGGGCATGAAATACCACACCGCCAGCTACGAGCAGGAGGCAGCCCAGCTG
CGCGAGGTGGCGGAGCCG
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